Rh7AG312800

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002355
Physical Location & Seq
Forward (+)
35197540 .. 35197884
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG312800.1

Sequence Viewer

Length: 345 bp
ATGATGATGCGTAGCATTGTGAAGAAGCTCTTGTTCTGTGGAGCAAAGGGGTTTCCCTCCATCTCTCACTCGGACGACTCTCGTGTAGTGCCTGTGCCACAAGCCGGTCATGTCCGTGTGTACGTTGGAAGAGATATTAACATGATGTGCAAGTTTGAGATAGAAGCCAATTACTTAAACCACGTACCCACTATTCCGGAGTCTACTCCAGCTCTCCGCAGATCAAGAGTTCGGTTATTCCTACGATGGAGCTCTAAGAATAGCGTGCGACGTCGATCTCTTCCACTACATTCTTCATCTCCTCGATACCAGCAATCCCTCTGCCCATTACATGGAGCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

114

Amino Acids

13.04

Weight (kDa)

10.89

Isoelectric Point (pI)

80.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 274
AccB7I CCANNNNNTGG 1 cut(s) 332
AccI GTMKAC 1 cut(s) 203
AccIII TCCGGA 1 cut(s) 196
AciI CCGC 1 cut(s) 217
AcyI GRCGYC 1 cut(s) 271
AfaI GTAC 2 cut(s) 122, 186
AfiI CCNNNNNNNGG 2 cut(s) 104, 332
AluBI AGCT 4 cut(s) 28, 212, 252, 338
AluI AGCT 4 cut(s) 28, 212, 252, 338
Alw21I GWGCWC 1 cut(s) 254
Aor13HI TCCGGA 1 cut(s) 196
BanII GRGCYC 1 cut(s) 254
BauI CACGAG 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 254
BccI CCATC 2 cut(s) 68, 240
BpmI CTGGAG 1 cut(s) 192
BsaAI YACGTR 1 cut(s) 184
BsaHI GRCGYC 1 cut(s) 271
BsaWI WCCGGW 1 cut(s) 196
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 332
Bse118I RCCGGY 1 cut(s) 104
BseAI TCCGGA 1 cut(s) 196
BseLI CCNNNNNNNGG 2 cut(s) 104, 332
BseRI GAGGAG 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 254
BsiSI CCGG 2 cut(s) 105, 197
BslI CCNNNNNNNGG 2 cut(s) 104, 332
Bsp1286I GDGCHC 1 cut(s) 254
Bsp13I TCCGGA 1 cut(s) 196
Bsp143I GATC 2 cut(s) 221, 275
BspACI CCGC 1 cut(s) 217
BspEI TCCGGA 1 cut(s) 196
BsrFI RCCGGY 1 cut(s) 104
BssAI RCCGGY 1 cut(s) 104
BssMI GATC 2 cut(s) 221, 275
BssNI GRCGYC 1 cut(s) 271
BssSI CACGAG 1 cut(s) 81
Bst2BI CACGAG 1 cut(s) 81
Bst6I CTCTTC 2 cut(s) 124, 285
BstACI GRCGYC 1 cut(s) 271
BstBAI YACGTR 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 266
BstDEI CTNAG 1 cut(s) 255
BstKTI GATC 2 cut(s) 224, 278
BstMBI GATC 2 cut(s) 221, 275
Cac8I GCNNGC 1 cut(s) 266
Cfr10I RCCGGY 1 cut(s) 104
Csp6I GTAC 2 cut(s) 121, 185
CviAII CATG 3 cut(s) 110, 142, 332
CviJI RGCY 6 cut(s) 28, 104, 167, 212, 252, 338
CviKI_1 RGCY 6 cut(s) 28, 104, 167, 212, 252, 338
CviQI GTAC 2 cut(s) 121, 185
DdeI CTNAG 1 cut(s) 255
DpnI GATC 2 cut(s) 223, 277
DpnII GATC 2 cut(s) 221, 275
Eam1104I CTCTTC 2 cut(s) 124, 285
EarI CTCTTC 2 cut(s) 124, 285
Ecl136II GAGCTC 1 cut(s) 252
Eco24I GRGCYC 1 cut(s) 254
Eco53kI GAGCTC 1 cut(s) 252
EcoICRI GAGCTC 1 cut(s) 252
EcoT38I GRGCYC 1 cut(s) 254
FaeI CATG 3 cut(s) 113, 145, 335
FaiI YATR 3 cut(s) 111, 143, 333
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FatI CATG 3 cut(s) 109, 141, 331
FblI GTMKAC 1 cut(s) 203
FriOI GRGCYC 1 cut(s) 254
GsuI CTGGAG 1 cut(s) 192
HapII CCGG 2 cut(s) 105, 197
Hin1I GRCGYC 1 cut(s) 271
Hin1II CATG 3 cut(s) 113, 145, 335
HinfI GANTC 2 cut(s) 77, 200
HpaII CCGG 2 cut(s) 105, 197
Hpy166II GTNNAC 2 cut(s) 121, 204
Hpy188I TCNGA 2 cut(s) 73, 344
Hpy188III TCNNGA 2 cut(s) 197, 225
Hpy8I GTNNAC 2 cut(s) 121, 204
Hpy99I CGWCG 2 cut(s) 273, 276
HpyCH4IV ACGT 3 cut(s) 123, 183, 271
HpyCH4V TGCA 1 cut(s) 150
HpyF3I CTNAG 1 cut(s) 255
HpySE526I ACGT 3 cut(s) 123, 183, 271
Hsp92I GRCGYC 1 cut(s) 271
Hsp92II CATG 3 cut(s) 113, 145, 335
Kpn2I TCCGGA 1 cut(s) 196
Kzo9I GATC 2 cut(s) 221, 275
LmnI GCTCC 3 cut(s) 41, 249, 335
LpnPI CCDG 5 cut(s) 105, 118, 210, 222, 323
MaeII ACGT 3 cut(s) 123, 183, 271
MalI GATC 2 cut(s) 223, 277
MboI GATC 2 cut(s) 221, 275
MboII GAAGA 4 cut(s) 34, 141, 272, 285
MhlI GDGCHC 1 cut(s) 254
MluCI AATT 1 cut(s) 169
MlyI GAGTC 2 cut(s) 71, 209
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 3 cut(s) 67, 312, 329
MroI TCCGGA 1 cut(s) 196
MseI TTAA 2 cut(s) 138, 176
MslI CAYNNNNRTG 1 cut(s) 114
MspI CCGG 2 cut(s) 105, 197
NdeII GATC 2 cut(s) 221, 275
NlaIII CATG 3 cut(s) 113, 145, 335
PflMI CCANNNNNTGG 1 cut(s) 332
PleI GAGTC 2 cut(s) 71, 208
PpsI GAGTC 2 cut(s) 71, 208
Ppu21I YACGTR 1 cut(s) 184
Psp124BI GAGCTC 1 cut(s) 254
RsaI GTAC 2 cut(s) 122, 186
RsaNI GTAC 2 cut(s) 121, 185
RseI CAYNNNNRTG 1 cut(s) 114
SacI GAGCTC 1 cut(s) 254
SaqAI TTAA 2 cut(s) 138, 176
Sau3AI GATC 2 cut(s) 221, 275
SchI GAGTC 2 cut(s) 71, 209
SduI GDGCHC 1 cut(s) 254
SetI ASST 7 cut(s) 30, 126, 186, 214, 254, 274, 340
SmiMI CAYNNNNRTG 1 cut(s) 114
Sse9I AATT 1 cut(s) 169
SsiI CCGC 1 cut(s) 217
SstI GAGCTC 1 cut(s) 254
TaiI ACGT 3 cut(s) 126, 186, 274
TaqI TCGA 2 cut(s) 274, 304
TasI AATT 1 cut(s) 169
Tru1I TTAA 2 cut(s) 138, 176
Tru9I TTAA 2 cut(s) 138, 176
TspDTI ATGAA 1 cut(s) 285
TspGWI ACGGA 1 cut(s) 104
Van91I CCANNNNNTGG 1 cut(s) 332
XmiI GTMKAC 1 cut(s) 203
ZraI GACGTC 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.