RLG00000002435

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002355
Physical Location & Seq
Forward (+)
34173406 .. 34173804
399 bp
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UTR
Exon/CDS
Intron
RLM00000002435

Sequence Viewer

Length: 399 bp
ATGATGAGTAGCATTGTGAAGAAGCTCTTGTTCTGTGGAGCAAAGGGGTTTCCCTCCATCTCTGACTCGGACGACTCTCGCGTAGTGCCTGTGCCACAAGCCGGTCATGTCCGTGTGTACGTTGGAAGAGATATTAACATGATGCTCAAGTTTGAGATAGAAGCCAGTTACTTAAACCACCCACTATTCCGGAGTCTACTCCAGCTCTCCGCAGAACAAGAGTTCGGTTATTCCTACGATGGAGCTCTAAGAATAGCGTGCGACGTCGATCTCTTCCACTACATTCTTCATCTCCTCAATACCAGCAATCCCTCTGCCAATTACATGGAGCTTTCTGATCTCATTTCCAAGTTCTACAGCACTAGTGCTACTGTAACTACACTCGCTAAAACTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

133

Amino Acids

14.71

Weight (kDa)

6.03

Isoelectric Point (pI)

52.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 21 - 99 5.6e-19 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 267
AccI GTMKAC 1 cut(s) 196
AccII CGCG 1 cut(s) 81
AccIII TCCGGA 1 cut(s) 189
AciI CCGC 1 cut(s) 210
AcyI GRCGYC 1 cut(s) 264
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 101
AhlI ACTAGT 1 cut(s) 362
AluBI AGCT 4 cut(s) 25, 205, 245, 331
AluI AGCT 4 cut(s) 25, 205, 245, 331
Alw21I GWGCWC 1 cut(s) 247
Aor13HI TCCGGA 1 cut(s) 189
BanII GRGCYC 1 cut(s) 247
Bbv12I GWGCWC 1 cut(s) 247
BccI CCATC 2 cut(s) 65, 233
BcuI ACTAGT 1 cut(s) 362
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 1 cut(s) 355
BmsI GCATC 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 264
BsaWI WCCGGW 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 165
BseAI TCCGGA 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 101
BseNI ACTGG 1 cut(s) 165
BseRI GAGGAG 1 cut(s) 284
Bsh1236I CGCG 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 247
BsiSI CCGG 2 cut(s) 102, 190
BslI CCNNNNNNNGG 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 247
Bsp13I TCCGGA 1 cut(s) 189
Bsp143I GATC 2 cut(s) 268, 337
BspACI CCGC 1 cut(s) 210
BspEI TCCGGA 1 cut(s) 189
BspFNI CGCG 1 cut(s) 81
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 1 cut(s) 165
BssAI RCCGGY 1 cut(s) 101
BssMI GATC 2 cut(s) 268, 337
BssNI GRCGYC 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 373
Bst6I CTCTTC 2 cut(s) 121, 278
BstACI GRCGYC 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 259
BstDEI CTNAG 1 cut(s) 248
BstFNI CGCG 1 cut(s) 81
BstKTI GATC 2 cut(s) 271, 340
BstMBI GATC 2 cut(s) 268, 337
BstMWI GCNNNNNNNGC 1 cut(s) 392
BstSFI CTRYAG 1 cut(s) 355
BstUI CGCG 1 cut(s) 81
BstXI CCANNNNNNTGG 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 259
Cfr10I RCCGGY 1 cut(s) 101
Csp6I GTAC 1 cut(s) 118
CviAII CATG 3 cut(s) 107, 139, 325
CviJI RGCY 6 cut(s) 25, 101, 164, 205, 245, 331
CviKI_1 RGCY 6 cut(s) 25, 101, 164, 205, 245, 331
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 1 cut(s) 248
DpnI GATC 2 cut(s) 270, 339
DpnII GATC 2 cut(s) 268, 337
Eam1104I CTCTTC 2 cut(s) 121, 278
EarI CTCTTC 2 cut(s) 121, 278
Ecl136II GAGCTC 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 247
Eco53kI GAGCTC 1 cut(s) 245
EcoICRI GAGCTC 1 cut(s) 245
EcoT38I GRGCYC 1 cut(s) 247
FaeI CATG 3 cut(s) 110, 142, 328
FaiI YATR 3 cut(s) 108, 140, 326
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FatI CATG 3 cut(s) 106, 138, 324
FblI GTMKAC 1 cut(s) 196
FriOI GRGCYC 1 cut(s) 247
FspBI CTAG 1 cut(s) 363
GsuI CTGGAG 1 cut(s) 185
HapII CCGG 2 cut(s) 102, 190
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 3 cut(s) 110, 142, 328
HinfI GANTC 3 cut(s) 65, 74, 193
HpaII CCGG 2 cut(s) 102, 190
Hpy166II GTNNAC 2 cut(s) 118, 197
Hpy188I TCNGA 3 cut(s) 64, 70, 337
Hpy188III TCNNGA 1 cut(s) 190
Hpy8I GTNNAC 2 cut(s) 118, 197
Hpy99I CGWCG 2 cut(s) 266, 269
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4IV ACGT 2 cut(s) 120, 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 392
HpyF3I CTNAG 1 cut(s) 248
HpySE526I ACGT 2 cut(s) 120, 264
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 3 cut(s) 110, 142, 328
Kpn2I TCCGGA 1 cut(s) 189
Kzo9I GATC 2 cut(s) 268, 337
LmnI GCTCC 3 cut(s) 38, 242, 328
LpnPI CCDG 6 cut(s) 102, 115, 178, 203, 215, 316
LweI GCATC 1 cut(s) 132
MaeI CTAG 1 cut(s) 363
MaeII ACGT 2 cut(s) 120, 264
MaeIII GTNAC 2 cut(s) 167, 373
MalI GATC 2 cut(s) 270, 339
MboI GATC 2 cut(s) 268, 337
MboII GAAGA 4 cut(s) 31, 138, 265, 278
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 1 cut(s) 319
MlyI GAGTC 3 cut(s) 59, 68, 202
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 3 cut(s) 64, 305, 322
MroI TCCGGA 1 cut(s) 189
MseI TTAA 2 cut(s) 135, 173
MslI CAYNNNNRTG 1 cut(s) 111
MspI CCGG 2 cut(s) 102, 190
MvnI CGCG 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 392
NdeII GATC 2 cut(s) 268, 337
NlaIII CATG 3 cut(s) 110, 142, 328
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PleI GAGTC 3 cut(s) 59, 68, 201
PpsI GAGTC 3 cut(s) 59, 68, 201
Psp124BI GAGCTC 1 cut(s) 247
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
RseI CAYNNNNRTG 1 cut(s) 111
SacI GAGCTC 1 cut(s) 247
SaqAI TTAA 2 cut(s) 135, 173
Sau3AI GATC 2 cut(s) 268, 337
SchI GAGTC 3 cut(s) 59, 68, 202
SduI GDGCHC 1 cut(s) 247
SetI ASST 6 cut(s) 27, 123, 207, 247, 267, 333
SfaNI GCATC 1 cut(s) 132
SfcI CTRYAG 1 cut(s) 355
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
SpeI ACTAGT 1 cut(s) 362
Sse9I AATT 1 cut(s) 319
SsiI CCGC 1 cut(s) 210
SspMI CTAG 1 cut(s) 363
SstI GAGCTC 1 cut(s) 247
TaaI ACNGT 1 cut(s) 373
TaiI ACGT 2 cut(s) 123, 267
TaqI TCGA 1 cut(s) 267
TasI AATT 1 cut(s) 319
Tru1I TTAA 2 cut(s) 135, 173
Tru9I TTAA 2 cut(s) 135, 173
TspDTI ATGAA 1 cut(s) 278
TspGWI ACGGA 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 196
XspI CTAG 1 cut(s) 363
ZraI GACGTC 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.