AT5G42660

Protein of unknown function (DUF616)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002998
Physical Location & Seq
Reverse (-)
17102924 .. 17106103
3180 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42660.1

Sequence Viewer

Length: 1392 bp
ATGTTCAACAACAACAGTGTCTCGATCTCAGTATCTGACGACGAATCTAACGATTTGAATCGGATCCGAGCTCGTACCCGACGAAAGCGGAAGAAAGTGAGTCACAGAACCAGCTACGAGCTTCCTCGTCATGTTCTAAGGCTTTTTGTGAGATACTGGGTCGTCTTAGTTTTTCTTCTCGCTGTTGGGTTGCTTGTATTTGAATCAACGAGGATCGGATTCAAATCTAGTGACTTGAAGAAACCAGATTTGAATGGGAAAGAGAGTCCTAGTAAGAAAAATGAAGGAAATTTGAATCGATTGGATCCTACTACCAAAGTTATTGGTGGTGTTAGACAACGTTGTTTGAAGCTTTTACCACCTGAGGAGCTTGAGCATCTTGATATCTTAGAGCGTAAAGATTCAGGCTCTCCGGTTAAGAGAGTTGTGTATCTAACTGATACGGATGTGTCGGTGGGAGAAATGAGAGGTGTTCGTGGTAATGGGACGCGGTTTAATTTATTCACGGGGAACCAGACTTTTGCTGAGAGAGAAAATAGTTTTCAGGTAAGGGAAACAGTTTCTTTGCATTGTGGGTTTTTCAATGAAAATGGGGGATTTAGGATTTCGGATAAGGATAAGAAGTTTATGACATCATGTGAAGTAGTGGTCTCGACGTGTGCGTTTGGTGGTGGAGATAACCTTTATGAACCTATTGGAATGTCTAAGACATCAAGTCAAAAGGTTTGCTATGTTGCGTTTTGGGATGAAGTTACTCTTACAACACAAGAAGCAGAGGGTCATAAGATCGATGAGAATGATCACATTGGAAAGTGGCGTATTGTGATTGTAAAGGATCTTCCTTTTACAGACCAAAGGCTTAATGGGAAGATCCCAAAGATGTTGGCCCATCGCCTTTTCCCAGATGCCAAGTACTCGATTTGGGTAGACTCAAAATCCCAGTTTAGAAGAGACCCACTTGGTGTACTAGATGCTCTTCTTTGGCGAACAAACTCGGTGCTTGCAATTTCAGAACATGGAGCTCGAAGCAGTGTATACGACGAGGCAAACGCTGTCATCAAGAAACACAAAGCTACACCCGAAGAAGTTGAAGTGCAGATAAATCAATACCGACATGACAAATTACCCGAAGATAAAAGATTCAACGGGAAAAAAGCTTTATCTGAAGCCTCTGTGATTGTAAGGGAACACACTCCATTGACAAATCTATTCATGTGCCTCTGGTTCAATGAAGTTGTCCGCTTCACTTCGCGTGATCAATTGAGTTTCCCATACGTTCTTTGGCGTTTGAAAGTTCTCAAGAACATCAACATGTTCCCTGTCTGTACACGTAAAGATCTCGTCAATAGCATAGGCCATGTACGCAAGGCTAAACCGTTAGTTACCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF616 Dirigent

Protein Analysis

463

Amino Acids

53.06

Weight (kDa)

9.52

Isoelectric Point (pI)

28.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOD1_MUCI70 PF04765 160 - 453 6.3e-118 TOD1/MUCI70, glycosyltransferase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 927, 1035
AccII CGCG 2 cut(s) 490, 1252
AciI CCGC 3 cut(s) 88, 490, 1240
AclI AACGTT 1 cut(s) 340
AclWI GGATC 7 cut(s) 58, 71, 221, 299, 312, 843, 865
AcsI RAATTY 1 cut(s) 289
AcuI CTGAAG 1 cut(s) 1185
AdeI CACNNNGTG 1 cut(s) 962
AfaI GTAC 5 cut(s) 76, 914, 966, 1327, 1362
AflIII ACRYGT 3 cut(s) 656, 1311, 1328
AhdI GACNNNNNGTC 1 cut(s) 714
AjiI CACGTC 1 cut(s) 657
AluBI AGCT 8 cut(s) 71, 114, 121, 352, 370, 1022, 1073, 1157
AluI AGCT 8 cut(s) 71, 114, 121, 352, 370, 1022, 1073, 1157
Alw21I GWGCWC 2 cut(s) 73, 1024
Alw26I GTCTC 3 cut(s) 25, 655, 945
AlwI GGATC 7 cut(s) 58, 71, 221, 299, 312, 843, 865
AlwNI CAGNNNCTG 1 cut(s) 35
AoxI GGCC 2 cut(s) 885, 1354
ApoI RAATTY 1 cut(s) 289
AspS9I GGNCC 1 cut(s) 886
AxyI CCTNAGG 1 cut(s) 363
BaeI ACNNNNGTAYC 2 cut(s) 432, 465
BamHI GGATCC 2 cut(s) 63, 304
BanII GRGCYC 2 cut(s) 73, 1024
BarI GAAGNNNNNNTAC 2 cut(s) 822, 854
Bbv12I GWGCWC 2 cut(s) 73, 1024
BccI CCATC 1 cut(s) 897
BclI TGATCA 2 cut(s) 799, 1255
BcoDI GTCTC 3 cut(s) 25, 655, 945
BfaI CTAG 3 cut(s) 228, 270, 968
BglII AGATCT 1 cut(s) 1336
BmcAI AGTACT 1 cut(s) 914
BmeRI GACNNNNNGTC 1 cut(s) 714
BmgBI CACGTC 1 cut(s) 657
BmgT120I GGNCC 1 cut(s) 886
BmiI GGNNCC 3 cut(s) 65, 306, 512
BmrI ACTGGG 2 cut(s) 166, 934
BmsI GCATC 3 cut(s) 385, 895, 961
BmuI ACTGGG 2 cut(s) 166, 934
BpuEI CTTGAG 2 cut(s) 392, 1283
Bsa29I ATCGAT 2 cut(s) 298, 789
BsaAI YACGTR 1 cut(s) 1331
BsaBI GATNNNNATC 2 cut(s) 57, 223
BsaI GGTCTC 2 cut(s) 655, 945
BsaWI WCCGGW 1 cut(s) 412
Bse1I ACTGG 2 cut(s) 161, 940
Bse21I CCTNAGG 1 cut(s) 363
Bse8I GATNNNNATC 2 cut(s) 57, 223
BseCI ATCGAT 2 cut(s) 298, 789
BseGI GGATG 2 cut(s) 451, 751
BseJI GATNNNNATC 2 cut(s) 57, 223
BseMII CTCAG 3 cut(s) 42, 354, 516
BseNI ACTGG 2 cut(s) 161, 940
BseRI GAGGAG 1 cut(s) 380
BsgI GTGCAG 1 cut(s) 1115
Bsh1236I CGCG 2 cut(s) 490, 1252
BshFI GGCC 2 cut(s) 887, 1356
BshVI ATCGAT 2 cut(s) 298, 789
BsiHKAI GWGCWC 2 cut(s) 73, 1024
BsiSI CCGG 1 cut(s) 413
BslFI GGGAC 1 cut(s) 499
BsmAI GTCTC 3 cut(s) 25, 655, 945
BsmFI GGGAC 1 cut(s) 499
BsnI GGCC 2 cut(s) 887, 1356
Bso31I GGTCTC 2 cut(s) 655, 945
Bsp1286I GDGCHC 2 cut(s) 73, 1024
Bsp1407I TGTACA 1 cut(s) 1325
BspACI CCGC 3 cut(s) 88, 490, 1240
BspANI GGCC 2 cut(s) 887, 1356
BspCNI CTCAG 3 cut(s) 41, 355, 517
BspDI ATCGAT 2 cut(s) 298, 789
BspFNI CGCG 2 cut(s) 490, 1252
BspLI GGNNCC 3 cut(s) 65, 306, 512
BspPI GGATC 7 cut(s) 58, 71, 221, 299, 312, 843, 865
BspQI GCTCTTC 1 cut(s) 981
BspTNI GGTCTC 2 cut(s) 655, 945
BsrGI TGTACA 1 cut(s) 1325
BsrI ACTGG 2 cut(s) 161, 940
BssNAI GTATAC 1 cut(s) 1036
Bst1107I GTATAC 1 cut(s) 1036
Bst4CI ACNGT 3 cut(s) 17, 559, 1377
Bst6I CTCTTC 2 cut(s) 943, 981
BstAUI TGTACA 1 cut(s) 1325
BstBAI YACGTR 1 cut(s) 1331
BstC8I GCNNGC 1 cut(s) 1002
BstDEI CTNAG 7 cut(s) 28, 137, 166, 363, 388, 525, 705
BstF5I GGATG 2 cut(s) 451, 751
BstFNI CGCG 2 cut(s) 490, 1252
BstMAI GTCTC 3 cut(s) 25, 655, 945
BstMWI GCNNNNNNNGC 1 cut(s) 1362
BstNSI RCATGY 1 cut(s) 1315
BstUI CGCG 2 cut(s) 490, 1252
BstX2I RGATCY 5 cut(s) 63, 304, 835, 870, 1336
BstYI RGATCY 5 cut(s) 63, 304, 835, 870, 1336
BstZ17I GTATAC 1 cut(s) 1036
Bsu15I ATCGAT 2 cut(s) 298, 789
Bsu36I CCTNAGG 1 cut(s) 363
BsuRI GGCC 2 cut(s) 887, 1356
BsuTUI ATCGAT 2 cut(s) 298, 789
BtgZI GCGATG 1 cut(s) 875
BtrI CACGTC 1 cut(s) 657
BtsCI GGATG 2 cut(s) 451, 751
BtsI GCAGTG 1 cut(s) 1036
BtsIMutI CAGTG 2 cut(s) 22, 1036
Cac8I GCNNGC 1 cut(s) 1002
CaiI CAGNNNCTG 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 886
ClaI ATCGAT 2 cut(s) 298, 789
CseI GACGC 1 cut(s) 496
Csp6I GTAC 5 cut(s) 75, 913, 965, 1326, 1361
CviAII CATG 7 cut(s) 131, 636, 1016, 1115, 1213, 1312, 1358
CviQI GTAC 5 cut(s) 75, 913, 965, 1326, 1361
DdeI CTNAG 7 cut(s) 28, 137, 166, 363, 388, 525, 705
DraIII CACNNNGTG 1 cut(s) 962
DriI GACNNNNNGTC 1 cut(s) 714
Eam1104I CTCTTC 2 cut(s) 943, 981
Eam1105I GACNNNNNGTC 1 cut(s) 714
EarI CTCTTC 2 cut(s) 943, 981
Ecl136II GAGCTC 2 cut(s) 71, 1022
Eco24I GRGCYC 2 cut(s) 73, 1024
Eco31I GGTCTC 2 cut(s) 655, 945
Eco32I GATATC 1 cut(s) 385
Eco53kI GAGCTC 2 cut(s) 71, 1022
Eco57I CTGAAG 1 cut(s) 1185
Eco81I CCTNAGG 1 cut(s) 363
EcoICRI GAGCTC 2 cut(s) 71, 1022
EcoRV GATATC 1 cut(s) 385
EcoT38I GRGCYC 2 cut(s) 73, 1024
FaeI CATG 7 cut(s) 134, 639, 1019, 1118, 1216, 1315, 1361
FalI AAGNNNNNCTT 2 cut(s) 741, 773
FaqI GGGAC 1 cut(s) 499
FatI CATG 7 cut(s) 130, 635, 1015, 1114, 1212, 1311, 1357
FbaI TGATCA 2 cut(s) 799, 1255
FblI GTMKAC 2 cut(s) 927, 1035
FokI GGATG 2 cut(s) 458, 758
FriOI GRGCYC 2 cut(s) 73, 1024
FspBI CTAG 3 cut(s) 228, 270, 968
HaeIII GGCC 2 cut(s) 887, 1356
HapII CCGG 1 cut(s) 413
HgaI GACGC 1 cut(s) 496
Hin1II CATG 7 cut(s) 134, 639, 1019, 1118, 1216, 1315, 1361
HindIII AAGCTT 2 cut(s) 350, 1155
HpaII CCGG 1 cut(s) 413
Hpy166II GTNNAC 4 cut(s) 928, 965, 1036, 1328
Hpy188I TCNGA 7 cut(s) 37, 63, 68, 218, 610, 1012, 1165
Hpy188III TCNNGA 5 cut(s) 22, 380, 652, 1060, 1300
Hpy8I GTNNAC 4 cut(s) 928, 965, 1036, 1328
Hpy99I CGWCG 4 cut(s) 44, 84, 658, 1043
HpyAV CCTTC 1 cut(s) 278
HpyCH4III ACNGT 3 cut(s) 17, 559, 1377
HpyCH4IV ACGT 4 cut(s) 340, 656, 1275, 1330
HpyCH4V TGCA 3 cut(s) 568, 1004, 1096
HpyF10VI GCNNNNNNNGC 1 cut(s) 1362
HpyF3I CTNAG 7 cut(s) 28, 137, 166, 363, 388, 525, 705
HpySE526I ACGT 4 cut(s) 340, 656, 1275, 1330
Hsp92II CATG 7 cut(s) 134, 639, 1019, 1118, 1216, 1315, 1361
Ksp22I TGATCA 2 cut(s) 799, 1255
LguI GCTCTTC 1 cut(s) 981
LmnI GCTCC 2 cut(s) 367, 1019
LweI GCATC 3 cut(s) 385, 895, 961
MaeI CTAG 3 cut(s) 228, 270, 968
MaeII ACGT 4 cut(s) 340, 656, 1275, 1330
MaeIII GTNAC 4 cut(s) 101, 230, 751, 1381
MboII GAAGA 9 cut(s) 103, 167, 250, 830, 880, 960, 968, 1094, 1142
MfeI CAATTG 1 cut(s) 1259
MflI RGATCY 5 cut(s) 63, 304, 835, 870, 1336
MhlI GDGCHC 2 cut(s) 73, 1024
MluCI AATT 5 cut(s) 289, 496, 1005, 1121, 1259
MlyI GAGTC 3 cut(s) 109, 274, 923
MnlI CCTC 8 cut(s) 135, 204, 358, 461, 769, 1036, 1180, 1229
MseI TTAA 3 cut(s) 417, 495, 861
MslI CAYNNNNRTG 1 cut(s) 1310
MspI CCGG 1 cut(s) 413
MunI CAATTG 1 cut(s) 1259
MvnI CGCG 2 cut(s) 490, 1252
MwoI GCNNNNNNNGC 1 cut(s) 1362
NlaIII CATG 7 cut(s) 134, 639, 1019, 1118, 1216, 1315, 1361
NlaIV GGNNCC 3 cut(s) 65, 306, 512
NmuCI GTSAC 2 cut(s) 101, 230
NspI RCATGY 1 cut(s) 1315
PciI ACATGT 1 cut(s) 1311
PciSI GCTCTTC 1 cut(s) 981
PcsI WCGNNNNNNNCGW 3 cut(s) 48, 79, 659
PfeI GAWTC 7 cut(s) 44, 58, 203, 219, 295, 401, 1140
PleI GAGTC 3 cut(s) 108, 273, 923
PpsI GAGTC 3 cut(s) 108, 273, 923
Ppu21I YACGTR 1 cut(s) 1331
PscI ACATGT 1 cut(s) 1311
Psp124BI GAGCTC 2 cut(s) 73, 1024
Psp1406I AACGTT 1 cut(s) 340
PspN4I GGNNCC 3 cut(s) 65, 306, 512
PspPI GGNCC 1 cut(s) 886
PstNI CAGNNNCTG 1 cut(s) 35
PsuI RGATCY 5 cut(s) 63, 304, 835, 870, 1336
RsaI GTAC 5 cut(s) 76, 914, 966, 1327, 1362
RsaNI GTAC 5 cut(s) 75, 913, 965, 1326, 1361
RseI CAYNNNNRTG 1 cut(s) 1310
SacI GAGCTC 2 cut(s) 73, 1024
SapI GCTCTTC 1 cut(s) 981
SaqAI TTAA 3 cut(s) 417, 495, 861
Sau96I GGNCC 1 cut(s) 886
ScaI AGTACT 1 cut(s) 914
SchI GAGTC 3 cut(s) 109, 274, 923
SduI GDGCHC 2 cut(s) 73, 1024
SfaNI GCATC 3 cut(s) 385, 895, 961
SmiMI CAYNNNNRTG 1 cut(s) 1310
SmlI CTYRAG 2 cut(s) 371, 1298
SmoI CTYRAG 2 cut(s) 371, 1298
Sse9I AATT 5 cut(s) 289, 496, 1005, 1121, 1259
SsiI CCGC 3 cut(s) 88, 490, 1240
SspMI CTAG 3 cut(s) 228, 270, 968
SstI GAGCTC 2 cut(s) 73, 1024
TaaI ACNGT 3 cut(s) 17, 559, 1377
TaiI ACGT 4 cut(s) 343, 659, 1278, 1333
TaqI TCGA 6 cut(s) 23, 298, 653, 789, 917, 1024
TasI AATT 5 cut(s) 289, 496, 1005, 1121, 1259
TatI WGTACW 3 cut(s) 912, 964, 1325
TfiI GAWTC 7 cut(s) 44, 58, 203, 219, 295, 401, 1140
Tru1I TTAA 3 cut(s) 417, 495, 861
Tru9I TTAA 3 cut(s) 417, 495, 861
TscAI CASTG 2 cut(s) 22, 1036
TseFI GTSAC 2 cut(s) 101, 230
Tsp45I GTSAC 2 cut(s) 101, 230
TspDTI ATGAA 6 cut(s) 297, 600, 702, 762, 1201, 1245
TspGWI ACGGA 1 cut(s) 458
TspRI CASTG 2 cut(s) 22, 1036
XapI RAATTY 1 cut(s) 289
XceI RCATGY 1 cut(s) 1315
XcmI CCANNNNNNNNNTGG 2 cut(s) 860, 1278
XmiI GTMKAC 2 cut(s) 927, 1035
XspI CTAG 3 cut(s) 228, 270, 968
ZrmI AGTACT 1 cut(s) 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.