Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002998

Physical Location & Seq

Genomic Coordinates Forward (+)

62677914 .. 62680347

Gene Structure 2434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00329380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGTTCAACAGCAACAGCGTATCAATCTCAGTCTCCGATGACGAATCCGACGAGCTTGGCCGGATGCGCGTCCGAGTTCGCCGGAAGCGCAAGAAACTCGGCCACCGATTCAAGAACGAGTTCGTTCGCCGAGTGGTGAGGAATCTGGTCAAGTACTGGGCCCTTCTGATTCTTCTCCCAGCCATTGGTTTGCTTCTGTATGAGGCTTGGAGTATCGGCTGGAAGTCCCCACAGCTCAATAATAAGTCGGAAAAGCCGAGTTTGGTCCACTCGGAACTCAATGCGAGTTCGGAGAAGAAATCCGATGGCAATTTGAACCGGCTTGATCCTATTACTCGGGTTATTCATGGCGTTAGGCAACTTTTTGCAAATCTGCAAATACCTTACCTCCTGAAGAACTTGCAAAGCTTACCTCCTGAAGAAATTGAGCATCTGGAAATTCATGTGCGCGAAGATGCCACTAGTCCTGTTAAGAAATTGTTATACAGAACGGAGAATGATGGTCCGTTGTTAAGAGGGTACAACACCCGGTCTGAAGAGCACACAGAGGCCACGAGATTTAATTTGTTTACGGGAAATCAAACTCTAGATCAGAGAGGTGAAATGTTTAAGGTAAATGAAACTGTTACCATAAACTGTGGTTTCTACAGTGAAAATGGTGGGTTTAAGATCTCAAATGAAGACAAGAATTACATGCAAAGTTGTGACATTGTAGTCTCCACTTGTGCATTCGGTGGTGGAGATGATCTTTATCAACCCATTGGAATGTCAGAGGCATCTCTTCAGAAGGTTTGCTATGTTGCTTTTTGGGATGAAGTTACTGTAAGTACTCAGGAATCAGCTGAACATAGAATTGCTCTTGCCGAAGCATCTGTTATCGTTAGGGAGCATACCCCGTTGACGAATATGTTTACGTGCCTCTGGTTCAACGTGGTCGTTCGTTTCACGTCTTGTGATCAGCTCAGTTTCCCATATGTACTGTGGAGGTTGAAAGCGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF616 Dirigent

Protein Analysis

333

Amino Acids

38.18

Weight (kDa)

7.64

Isoelectric Point (pI)

43.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOD1_MUCI70	PF04765	178 - 283	5.3e-31	TOD1/MUCI70, glycosyltransferase-like domain
TOD1_MUCI70	PF04765	286 - 331	5.2e-18	TOD1/MUCI70, glycosyltransferase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42660
fragaria_vesca	FvH4_7g01740 FvH4_7g01740 FvH4_7g01740 FvH4_7g01740
malus_domestica	MD02G1301200.v1.1 MD07G1022800.v1.1
prunus_persica	Prupe.2G023300_v2.0.a1 Prupe.2G023300_v2.0.a1 Prupe.2G023300_v2.0.a1 Prupe.2G023300_v2.0.a1 Prupe.2G023300_v2.0.a1
pyrus_communis	pycom02g25290 pycom07g01730
rosa_chinensis	RchiOBHm_Chr1g0318301 RchiOBHm_Chr4g0418501
rosa_laevigata	RLG00000007859 RLG00000030546
rosa_multiflora	Rmu_sc0000363.1_g000055 Rmu_sc0001879.1_g000028 Rmu_ssc0000308.1_g000013
rosa_roxburghii	Rroxscaffold_4G00329380 Rroxscaffold_4G00329420 Rroxscaffold_4G00329640 Rroxscaffold_5G00361730
rosa_rugosa	Rorug01G0020100 Rorug01G0020100 Rorug04G0153900
rosa_samantha	Rh1AG032200 Rh1BG027900 Rh1CG030700 Rh1DG039000 Rh4AG214900 Rh4BG215500 Rh4CG226600 Rh4DG213500
rosa_wichuraiana	Rw0G010070 Rw1G002580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	713
AccB7I	CCANNNNNTGG	1 cut(s)	185
AccII	CGCG	2 cut(s)	69, 450
AclWI	GGATC	1 cut(s)	320
AcoI	YGGCCR	2 cut(s)	58, 100
AcsI	RAATTY	1 cut(s)	438
AcuI	CTGAAG	4 cut(s)	413, 438, 555, 767
AfaI	GTAC	4 cut(s)	155, 521, 829, 978
AfeI	AGCGCT	1 cut(s)	996
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	5 cut(s)	7, 112, 316, 928, 991
AhlI	ACTAGT	1 cut(s)	461
AjiI	CACGTC	1 cut(s)	948
AluBI	AGCT	5 cut(s)	55, 235, 408, 842, 961
AluI	AGCT	5 cut(s)	55, 235, 408, 842, 961
Alw21I	GWGCWC	1 cut(s)	543
Alw26I	GTCTC	2 cut(s)	37, 721
AlwI	GGATC	1 cut(s)	320
Ama87I	CYCGRG	1 cut(s)	336
Aor51HI	AGCGCT	1 cut(s)	996
AoxI	GGCC	4 cut(s)	58, 100, 159, 549
ApaI	GGGCCC	1 cut(s)	163
ApoI	RAATTY	1 cut(s)	438
Asp700I	GAANNNNTTC	1 cut(s)	119
AspLEI	GCGC	4 cut(s)	69, 90, 450, 997
AspS9I	GGNCC	4 cut(s)	159, 160, 265, 503
AsuC2I	CCSGG	1 cut(s)	529
AsuHPI	GGTGA	2 cut(s)	148, 611
AvaI	CYCGRG	1 cut(s)	336
AvaII	GGWCC	2 cut(s)	265, 503
BaeGI	GKGCMC	1 cut(s)	163
BanII	GRGCYC	1 cut(s)	163
BauI	CACGAG	1 cut(s)	553
BbsI	GAAGAC	1 cut(s)	687
Bbv12I	GWGCWC	1 cut(s)	543
BccI	CCATC	2 cut(s)	299, 494
BcgI	CGANNNNNNTGC	2 cut(s)	79, 113
BclI	TGATCA	1 cut(s)	955
BcnI	CCSGG	1 cut(s)	529
BcoDI	GTCTC	2 cut(s)	37, 721
BcuI	ACTAGT	1 cut(s)	461
BfaI	CTAG	3 cut(s)	462, 587, 1000
BfmI	CTRYAG	1 cut(s)	646
BfoI	RGCGCY	1 cut(s)	998
BglII	AGATCT	1 cut(s)	669
BmcAI	AGTACT	2 cut(s)	155, 829
Bme1390I	CCNGG	1 cut(s)	529
Bme18I	GGWCC	2 cut(s)	265, 503
BmeT110I	CYCGRG	1 cut(s)	336
BmgBI	CACGTC	1 cut(s)	948
BmgT120I	GGNCC	4 cut(s)	159, 160, 265, 503
BmiI	GGNNCC	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	529
BmrI	ACTGGG	1 cut(s)	166
BmsI	GCATC	5 cut(s)	54, 439, 445, 785, 878
BmuI	ACTGGG	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	687
BpuMI	CCSGG	1 cut(s)	529
BsaAI	YACGTR	1 cut(s)	915
BsaBI	GATNNNNATC	1 cut(s)	750
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse118I	RCCGGY	1 cut(s)	318
Bse1I	ACTGG	1 cut(s)	161
Bse8I	GATNNNNATC	1 cut(s)	750
BseGI	GGATG	2 cut(s)	69, 817
BseJI	GATNNNNATC	1 cut(s)	750
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMII	CTCAG	3 cut(s)	42, 845, 976
BseNI	ACTGG	1 cut(s)	161
BseSI	GKGCMC	1 cut(s)	163
BseYI	CCCAGC	1 cut(s)	178
Bsh1236I	CGCG	2 cut(s)	69, 450
BshFI	GGCC	4 cut(s)	60, 102, 161, 551
BsiHKAI	GWGCWC	1 cut(s)	543
BsiHKCI	CYCGRG	1 cut(s)	336
BsiSI	CCGG	4 cut(s)	61, 82, 319, 529
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	2 cut(s)	37, 721
BsmFI	GGGAC	1 cut(s)	211
BsmI	GAATGC	1 cut(s)	728
BsnI	GGCC	4 cut(s)	60, 102, 161, 551
BsoBI	CYCGRG	1 cut(s)	336
Bsp120I	GGGCCC	1 cut(s)	159
Bsp1286I	GDGCHC	2 cut(s)	163, 543
Bsp143I	GATC	5 cut(s)	325, 589, 669, 745, 955
BspANI	GGCC	4 cut(s)	60, 102, 161, 551
BspCNI	CTCAG	3 cut(s)	41, 844, 975
BspFNI	CGCG	2 cut(s)	69, 450
BspLI	GGNNCC	1 cut(s)	161
BspPI	GGATC	1 cut(s)	320
BspQI	GCTCTTC	1 cut(s)	531
BsrFI	RCCGGY	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	161
BssAI	RCCGGY	1 cut(s)	318
BssMI	GATC	5 cut(s)	325, 589, 669, 745, 955
BssSI	CACGAG	1 cut(s)	553
Bst2BI	CACGAG	1 cut(s)	553
Bst4CI	ACNGT	5 cut(s)	625, 638, 650, 823, 981
Bst6I	CTCTTC	2 cut(s)	531, 786
BstBAI	YACGTR	1 cut(s)	915
BstDEI	CTNAG	3 cut(s)	28, 831, 962
BstF5I	GGATG	2 cut(s)	69, 817
BstFNI	CGCG	2 cut(s)	69, 450
BstH2I	RGCGCY	1 cut(s)	998
BstHHI	GCGC	4 cut(s)	69, 90, 450, 997
BstKTI	GATC	5 cut(s)	328, 592, 672, 748, 958
BstMAI	GTCTC	2 cut(s)	37, 721
BstMBI	GATC	5 cut(s)	325, 589, 669, 745, 955
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 87
BstNSI	RCATGY	1 cut(s)	697
BstSCI	CCNGG	1 cut(s)	527
BstSFI	CTRYAG	1 cut(s)	646
BstSLI	GKGCMC	1 cut(s)	163
BstUI	CGCG	2 cut(s)	69, 450
BstV2I	GAAGAC	1 cut(s)	687
BstX2I	RGATCY	1 cut(s)	669
BstYI	RGATCY	1 cut(s)	669
BsuRI	GGCC	4 cut(s)	60, 102, 161, 551
BtrI	CACGTC	1 cut(s)	948
BtsCI	GGATG	2 cut(s)	69, 817
BtsIMutI	CAGTG	1 cut(s)	655
CfoI	GCGC	4 cut(s)	69, 90, 450, 997
Cfr10I	RCCGGY	1 cut(s)	318
Cfr13I	GGNCC	4 cut(s)	159, 160, 265, 503
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	4 cut(s)	154, 520, 828, 977
CviAII	CATG	3 cut(s)	347, 443, 694
CviQI	GTAC	4 cut(s)	154, 520, 828, 977
DdeI	CTNAG	3 cut(s)	28, 831, 962
DpnI	GATC	5 cut(s)	327, 591, 671, 747, 957
DpnII	GATC	5 cut(s)	325, 589, 669, 745, 955
DrdI	GACNNNNNNGTC	1 cut(s)	713
DseDI	GACNNNNNNGTC	1 cut(s)	713
EaeI	YGGCCR	2 cut(s)	58, 100
Eam1104I	CTCTTC	2 cut(s)	531, 786
EarI	CTCTTC	2 cut(s)	531, 786
Eco24I	GRGCYC	1 cut(s)	163
Eco47I	GGWCC	2 cut(s)	265, 503
Eco47III	AGCGCT	1 cut(s)	996
Eco57I	CTGAAG	4 cut(s)	413, 438, 555, 767
Eco88I	CYCGRG	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	163
FaeI	CATG	3 cut(s)	350, 446, 697
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	3 cut(s)	346, 442, 693
FauNDI	CATATG	1 cut(s)	973
FbaI	TGATCA	1 cut(s)	955
FokI	GGATG	2 cut(s)	76, 824
FriOI	GRGCYC	1 cut(s)	163
FspBI	CTAG	3 cut(s)	462, 587, 1000
GlaI	GCGC	4 cut(s)	68, 89, 449, 996
GsaI	CCCAGC	1 cut(s)	182
HaeII	RGCGCY	1 cut(s)	998
HaeIII	GGCC	4 cut(s)	60, 102, 161, 551
HapII	CCGG	4 cut(s)	61, 82, 319, 529
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	4 cut(s)	69, 90, 450, 997
Hin1II	CATG	3 cut(s)	350, 446, 697
Hin6I	GCGC	4 cut(s)	67, 88, 448, 995
HinP1I	GCGC	4 cut(s)	67, 88, 448, 995
HincII	GTYRAC	1 cut(s)	900
HindII	GTYRAC	1 cut(s)	900
HindIII	AAGCTT	1 cut(s)	406
HinfI	GANTC	5 cut(s)	44, 108, 142, 169, 836
HpaII	CCGG	4 cut(s)	61, 82, 319, 529
HphI	GGTGA	2 cut(s)	148, 611
Hpy166II	GTNNAC	4 cut(s)	268, 570, 900, 912
Hpy188III	TCNNGA	6 cut(s)	112, 391, 416, 434, 587, 833
Hpy8I	GTNNAC	4 cut(s)	268, 570, 900, 912
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	173, 781
HpyCH4III	ACNGT	5 cut(s)	625, 638, 650, 823, 981
HpyCH4IV	ACGT	3 cut(s)	914, 930, 947
HpyCH4V	TGCA	5 cut(s)	368, 376, 403, 697, 728
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 87
HpyF3I	CTNAG	3 cut(s)	28, 831, 962
HpySE526I	ACGT	3 cut(s)	914, 930, 947
Hsp92II	CATG	3 cut(s)	350, 446, 697
HspAI	GCGC	4 cut(s)	67, 88, 448, 995
Ksp22I	TGATCA	1 cut(s)	955
Kzo9I	GATC	5 cut(s)	325, 589, 669, 745, 955
LguI	GCTCTTC	1 cut(s)	531
LmnI	GCTCC	1 cut(s)	886
LweI	GCATC	5 cut(s)	54, 439, 445, 785, 878
MaeI	CTAG	3 cut(s)	462, 587, 1000
MaeII	ACGT	3 cut(s)	914, 930, 947
MaeIII	GTNAC	3 cut(s)	625, 704, 817
MalI	GATC	5 cut(s)	327, 591, 671, 747, 957
MboI	GATC	5 cut(s)	325, 589, 669, 745, 955
MboII	GAAGA	8 cut(s)	164, 307, 406, 431, 464, 548, 692, 773
MflI	RGATCY	1 cut(s)	669
MhlI	GDGCHC	2 cut(s)	163, 543
MluCI	AATT	7 cut(s)	310, 423, 438, 476, 562, 688, 852
MmeI	TCCRAC	2 cut(s)	72, 228
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	5 cut(s)	471, 512, 561, 609, 666
MslI	CAYNNNNRTG	1 cut(s)	764
MspA1I	CMGCKG	1 cut(s)	842
MspI	CCGG	4 cut(s)	61, 82, 319, 529
MspR9I	CCNGG	1 cut(s)	529
Mva1269I	GAATGC	1 cut(s)	728
MvnI	CGCG	2 cut(s)	69, 450
MwoI	GCNNNNNNNGC	2 cut(s)	66, 87
NciI	CCSGG	1 cut(s)	529
NdeI	CATATG	1 cut(s)	973
NdeII	GATC	5 cut(s)	325, 589, 669, 745, 955
NlaIII	CATG	3 cut(s)	350, 446, 697
NlaIV	GGNNCC	1 cut(s)	161
NmeAIII	GCCGAG	3 cut(s)	78, 155, 282
NmuCI	GTSAC	1 cut(s)	704
NspI	RCATGY	1 cut(s)	697
PciSI	GCTCTTC	1 cut(s)	531
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 254
PctI	GAATGC	1 cut(s)	728
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	5 cut(s)	44, 108, 142, 169, 836
PflMI	CCANNNNNTGG	1 cut(s)	185
Ppu21I	YACGTR	1 cut(s)	915
PspFI	CCCAGC	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	161
PspOMI	GGGCCC	1 cut(s)	159
PspPI	GGNCC	4 cut(s)	159, 160, 265, 503
PsuI	RGATCY	1 cut(s)	669
PvuII	CAGCTG	1 cut(s)	842
RsaI	GTAC	4 cut(s)	155, 521, 829, 978
RsaNI	GTAC	4 cut(s)	154, 520, 828, 977
RseI	CAYNNNNRTG	1 cut(s)	764
SapI	GCTCTTC	1 cut(s)	531
SaqAI	TTAA	5 cut(s)	471, 512, 561, 609, 666
Sau3AI	GATC	5 cut(s)	325, 589, 669, 745, 955
Sau96I	GGNCC	4 cut(s)	159, 160, 265, 503
ScaI	AGTACT	2 cut(s)	155, 829
ScrFI	CCNGG	1 cut(s)	529
SduI	GDGCHC	2 cut(s)	163, 543
SfaNI	GCATC	5 cut(s)	54, 439, 445, 785, 878
SfcI	CTRYAG	1 cut(s)	646
SinI	GGWCC	2 cut(s)	265, 503
SmiMI	CAYNNNNRTG	1 cut(s)	764
SpeI	ACTAGT	1 cut(s)	461
Sse9I	AATT	7 cut(s)	310, 423, 438, 476, 562, 688, 852
SspMI	CTAG	3 cut(s)	462, 587, 1000
StyD4I	CCNGG	1 cut(s)	527
TaaI	ACNGT	5 cut(s)	625, 638, 650, 823, 981
TaiI	ACGT	3 cut(s)	917, 933, 950
TasI	AATT	7 cut(s)	310, 423, 438, 476, 562, 688, 852
TatI	WGTACW	3 cut(s)	153, 827, 976
TfiI	GAWTC	5 cut(s)	44, 108, 142, 169, 836
Tru1I	TTAA	5 cut(s)	471, 512, 561, 609, 666
Tru9I	TTAA	5 cut(s)	471, 512, 561, 609, 666
TscAI	CASTG	1 cut(s)	655
TseFI	GTSAC	1 cut(s)	704
Tsp45I	GTSAC	1 cut(s)	704
TspDTI	ATGAA	5 cut(s)	335, 431, 633, 693, 828
TspGWI	ACGGA	2 cut(s)	495, 506
TspRI	CASTG	1 cut(s)	655
Van91I	CCANNNNNTGG	1 cut(s)	185
VpaK11BI	GGWCC	2 cut(s)	265, 503
XapI	RAATTY	1 cut(s)	438
XbaI	TCTAGA	1 cut(s)	586
XceI	RCATGY	1 cut(s)	697
XcmI	CCANNNNNNNNNTGG	1 cut(s)	978
XmnI	GAANNNNTTC	1 cut(s)	119
XspI	CTAG	3 cut(s)	462, 587, 1000
ZrmI	AGTACT	2 cut(s)	155, 829

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.