Rw0G010070

Protein of unknown function (DUF616)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00417
OG0002998
Physical Location & Seq
Reverse (-)
105630 .. 108179
2550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G010070.1

Sequence Viewer

Length: 1380 bp
ATGATGAACAACAAGAGCATATCAATGGCAGTGTCGGATGACGAATCTGACGAGCTCGGCCGGTTGCGCGTTCGAGTTCGCCGGAAGCGCAAGAAACTCCACCACCGATTCAAGAATGGAGTGGTGAGGAATCTGGTCAGGTACTGGCCCCTGTTCTGGGCCCTTGTAATTTTTCTGGCGGCCATTTGTTTGCTTCTGTATGAGGCATGGACTATCCGCTGGAAATCCCCACAACTCAATAACTCAGAACTCACTGCGGTGAACAATGATTTGAATCGGCTTGATCCTATCACTCAGGTTGTTCGCGGCGTTACGCAACGTTGCTTGCCAATCTTACCTCCTGAACAACTTGAGCATCTGGAAATTCCTGTGCCCCAAGATTCCACTAGTCCTGTTAAAAAATTGATATACACAGCTGAGAATGATGCTCCGTTGTTAGGACGGTACAACACCCTATCTCAAGAGCACACAGATGCAACAAGATTTAATTTGTTTACTGGAAATCAAACTCTAGATCAGAGAGATGAAATGTTTAAGGTAAATGAAACTGTTACTATAAACTGTGGTTTCTACAGTGAAAGTGGTGGGTTTAAGATCTCAAATGAAGACAAGAATTACATGAAAAGTTGTGACATTGTAGTCTCCACTTGTGCATTTGGTGGTGGAGATGATCTTTATCAACCCATTGGAATGTCAGAGGCATCCCTTCAGAAGGTTTGCTTTGCTGCTTTTTGGGATGAAGTTACTGTGAGTACTCAAGAGTCAGCTGAACATAGAATTGGTGAGGATGGATTTATTGGGAAATGGCGCATTGTGGTTGTAAGAGATCTCCCTTTTGCGGACCAAAGGTTAAATGGAAAAATCCCAAAGATGTTGGCGCATCGTCTTTTTCCTCATTCAAAGTATTCCATTTGGGTAGATTCGAAGTCCCAATTTAGGAGGGACCCTTTAGGTGTGCTCGAAGCTCTTCTCTGGCGTACAAATTCTGTACTTGCAATCTCAGAACATGGAGCTCGTAGTAGCATTTATGACGAGGCGAAGGCTGTTGTCAAGAAAAACAAGGCCAAACCTGAAGAAGTTGAGGTGCAGTTGACTCAATATCGGAGTGAAGGCTTGCCAGAAGACAAGCGATTCAATGGAAAGAAAGCTCTAGCGGAAGCATCTGTTATCGTGAGGGAGCATACTCCACTGACTAATATGTTTATGTGCCTCTGGTTCAACGAGGTGGTTCGTTTTACTTCTCGCGATCAGCTTAGTTTCCCGTATGTACTATGGCGGTTGAAAGGGCTCAAGAACATTAACATGTTCCCTGTATGCACCCGCAAAGATCTTGTTAATAGCATGGGCCACATTCGCAAGGCTATGCCTCTCAGTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF616 Dirigent

Protein Analysis

459

Amino Acids

52.69

Weight (kDa)

9.1

Isoelectric Point (pI)

39.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOD1_MUCI70 PF04765 155 - 450 1.1e-119 TOD1/MUCI70, glycosyltransferase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 638
AccII CGCG 3 cut(s) 69, 306, 1245
AciI CCGC 8 cut(s) 179, 217, 257, 306, 839, 1154, 1276, 1321
AclI AACGTT 1 cut(s) 319
AclWI GGATC 1 cut(s) 278
AcoI YGGCCR 2 cut(s) 58, 180
AcsI RAATTY 2 cut(s) 363, 982
AcuI CTGAAG 2 cut(s) 692, 1092
AfaI GTAC 6 cut(s) 143, 446, 754, 979, 990, 1269
AfiI CCNNNNNNNGG 6 cut(s) 156, 157, 437, 712, 838, 936
AflIII ACRYGT 1 cut(s) 1302
AgsI TTSAA 6 cut(s) 112, 274, 900, 1135, 1219, 1282
AhlI ACTAGT 1 cut(s) 386
AjuI GAANNNNNNNTTGG 2 cut(s) 762, 794
AleI CACNNNNGTG 1 cut(s) 257
AluBI AGCT 7 cut(s) 55, 416, 767, 965, 1013, 1148, 1252
AluI AGCT 7 cut(s) 55, 416, 767, 965, 1013, 1148, 1252
Alw21I GWGCWC 4 cut(s) 57, 468, 960, 1015
Alw26I GTCTC 1 cut(s) 646
AlwI GGATC 1 cut(s) 278
AlwNI CAGNNNCTG 1 cut(s) 144
AoxI GGCC 6 cut(s) 58, 146, 159, 180, 1062, 1345
ApaI GGGCCC 1 cut(s) 163
ApeKI GCWGC 1 cut(s) 725
ApoI RAATTY 2 cut(s) 363, 982
Asp700I GAANNNNTTC 1 cut(s) 966
AspLEI GCGC 4 cut(s) 69, 90, 810, 880
AspS9I GGNCC 6 cut(s) 147, 159, 160, 841, 943, 1345
AsuHPI GGTGA 3 cut(s) 136, 271, 794
AsuII TTCGAA 1 cut(s) 923
AvaII GGWCC 2 cut(s) 841, 943
BaeGI GKGCMC 2 cut(s) 163, 375
BanII GRGCYC 4 cut(s) 57, 163, 1015, 1290
BbsI GAAGAC 2 cut(s) 612, 1128
Bbv12I GWGCWC 4 cut(s) 57, 468, 960, 1015
BbvI GCAGC 1 cut(s) 712
BccI CCATC 1 cut(s) 782
BcoDI GTCTC 1 cut(s) 646
BcuI ACTAGT 1 cut(s) 386
BfaI CTAG 3 cut(s) 387, 512, 1151
BfmI CTRYAG 1 cut(s) 571
BglII AGATCT 3 cut(s) 594, 826, 1327
BisI GCNGC 3 cut(s) 180, 307, 726
BlsI GCNGC 3 cut(s) 181, 308, 727
BmcAI AGTACT 1 cut(s) 754
Bme18I GGWCC 2 cut(s) 841, 943
BmgT120I GGNCC 6 cut(s) 147, 159, 160, 841, 943, 1345
BmiI GGNNCC 4 cut(s) 149, 161, 944, 945
BmsI GCATC 6 cut(s) 364, 415, 463, 710, 889, 1169
BpiI GAAGAC 2 cut(s) 612, 1128
Bpu14I TTCGAA 1 cut(s) 923
BpuEI CTTGAG 4 cut(s) 371, 444, 741, 1274
BsaBI GATNNNNATC 2 cut(s) 273, 675
Bsc4I CCNNNNNNNGG 6 cut(s) 156, 157, 437, 712, 838, 936
Bse118I RCCGGY 1 cut(s) 60
Bse1I ACTGG 2 cut(s) 149, 502
Bse8I GATNNNNATC 2 cut(s) 273, 675
BseGI GGATG 4 cut(s) 43, 701, 742, 793
BseJI GATNNNNATC 2 cut(s) 273, 675
BseLI CCNNNNNNNGG 6 cut(s) 156, 157, 437, 712, 838, 936
BseMII CTCAG 4 cut(s) 258, 308, 408, 1014
BseNI ACTGG 2 cut(s) 149, 502
BseSI GKGCMC 2 cut(s) 163, 375
BseX3I CGGCCG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 712
BsgI GTGCAG 1 cut(s) 1106
Bsh1236I CGCG 3 cut(s) 69, 306, 1245
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 6 cut(s) 60, 148, 161, 182, 1064, 1347
BsiEI CGRYCG 1 cut(s) 61
BsiHKAI GWGCWC 4 cut(s) 57, 468, 960, 1015
BsiSI CCGG 2 cut(s) 61, 82
BslFI GGGAC 2 cut(s) 913, 956
BslI CCNNNNNNNGG 6 cut(s) 156, 157, 437, 712, 838, 936
BsmAI GTCTC 1 cut(s) 646
BsmFI GGGAC 2 cut(s) 913, 956
BsnI GGCC 6 cut(s) 60, 148, 161, 182, 1064, 1347
Bsp119I TTCGAA 1 cut(s) 923
Bsp120I GGGCCC 1 cut(s) 159
Bsp1286I GDGCHC 7 cut(s) 57, 163, 375, 468, 960, 1015, 1290
Bsp143I GATC 7 cut(s) 283, 514, 594, 670, 826, 1246, 1327
Bsp68I TCGCGA 1 cut(s) 1245
BspACI CCGC 8 cut(s) 179, 217, 257, 306, 839, 1154, 1276, 1321
BspANI GGCC 6 cut(s) 60, 148, 161, 182, 1064, 1347
BspCNI CTCAG 4 cut(s) 257, 307, 409, 1013
BspFNI CGCG 3 cut(s) 69, 306, 1245
BspLI GGNNCC 4 cut(s) 149, 161, 944, 945
BspPI GGATC 1 cut(s) 278
BspQI GCTCTTC 1 cut(s) 972
BspT104I TTCGAA 1 cut(s) 923
BsrFI RCCGGY 1 cut(s) 60
BsrI ACTGG 2 cut(s) 149, 502
BssAI RCCGGY 1 cut(s) 60
BssMI GATC 7 cut(s) 283, 514, 594, 670, 826, 1246, 1327
Bst4CI ACNGT 5 cut(s) 444, 550, 563, 575, 748
Bst6I CTCTTC 1 cut(s) 972
BstBI TTCGAA 1 cut(s) 923
BstC8I GCNNGC 2 cut(s) 326, 1115
BstDEI CTNAG 6 cut(s) 244, 294, 417, 1000, 1253, 1370
BstENI CCTNNNNNAGG 1 cut(s) 710
BstF5I GGATG 4 cut(s) 43, 701, 742, 793
BstFNI CGCG 3 cut(s) 69, 306, 1245
BstHHI GCGC 4 cut(s) 69, 90, 810, 880
BstKTI GATC 7 cut(s) 286, 517, 597, 673, 829, 1249, 1330
BstMAI GTCTC 1 cut(s) 646
BstMBI GATC 7 cut(s) 283, 514, 594, 670, 826, 1246, 1327
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 3 cut(s) 66, 87, 1353
BstNSI RCATGY 1 cut(s) 1306
BstSFI CTRYAG 1 cut(s) 571
BstSLI GKGCMC 2 cut(s) 163, 375
BstUI CGCG 3 cut(s) 69, 306, 1245
BstV1I GCAGC 1 cut(s) 712
BstV2I GAAGAC 2 cut(s) 612, 1128
BstX2I RGATCY 3 cut(s) 594, 826, 1327
BstYI RGATCY 3 cut(s) 594, 826, 1327
BstZI CGGCCG 1 cut(s) 58
BsuRI GGCC 6 cut(s) 60, 148, 161, 182, 1064, 1347
BtsCI GGATG 4 cut(s) 43, 701, 742, 793
BtsI GCAGTG 2 cut(s) 36, 252
BtsIMutI CAGTG 4 cut(s) 36, 252, 580, 1187
BtuMI TCGCGA 1 cut(s) 1245
Cac8I GCNNGC 2 cut(s) 326, 1115
CaiI CAGNNNCTG 1 cut(s) 144
CfoI GCGC 4 cut(s) 69, 90, 810, 880
Cfr10I RCCGGY 1 cut(s) 60
Cfr13I GGNCC 6 cut(s) 147, 159, 160, 841, 943, 1345
Csp6I GTAC 6 cut(s) 142, 445, 753, 978, 989, 1268
CviAII CATG 5 cut(s) 207, 619, 1007, 1303, 1342
CviQI GTAC 6 cut(s) 142, 445, 753, 978, 989, 1268
DdeI CTNAG 6 cut(s) 244, 294, 417, 1000, 1253, 1370
DpnI GATC 7 cut(s) 285, 516, 596, 672, 828, 1248, 1329
DpnII GATC 7 cut(s) 283, 514, 594, 670, 826, 1246, 1327
DrdI GACNNNNNNGTC 1 cut(s) 638
DseDI GACNNNNNNGTC 1 cut(s) 638
EaeI YGGCCR 2 cut(s) 58, 180
EagI CGGCCG 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 972
EarI CTCTTC 1 cut(s) 972
Ecl136II GAGCTC 2 cut(s) 55, 1013
EclXI CGGCCG 1 cut(s) 58
Eco24I GRGCYC 4 cut(s) 57, 163, 1015, 1290
Eco47I GGWCC 2 cut(s) 841, 943
Eco52I CGGCCG 1 cut(s) 58
Eco53kI GAGCTC 2 cut(s) 55, 1013
Eco57I CTGAAG 2 cut(s) 692, 1092
EcoICRI GAGCTC 2 cut(s) 55, 1013
EcoNI CCTNNNNNAGG 1 cut(s) 710
EcoO109I RGGNCCY 2 cut(s) 160, 943
EcoT38I GRGCYC 4 cut(s) 57, 163, 1015, 1290
FaeI CATG 5 cut(s) 210, 622, 1010, 1306, 1345
FalI AAGNNNNNCTT 2 cut(s) 704, 736
FaqI GGGAC 2 cut(s) 913, 956
FatI CATG 5 cut(s) 206, 618, 1006, 1302, 1341
FauI CCCGC 1 cut(s) 1328
Fnu4HI GCNGC 3 cut(s) 180, 307, 726
FokI GGATG 4 cut(s) 50, 688, 749, 800
FriOI GRGCYC 4 cut(s) 57, 163, 1015, 1290
Fsp4HI GCNGC 3 cut(s) 180, 307, 726
FspBI CTAG 3 cut(s) 387, 512, 1151
GlaI GCGC 4 cut(s) 68, 89, 809, 879
GluI GCNGC 3 cut(s) 180, 307, 726
HaeIII GGCC 6 cut(s) 60, 148, 161, 182, 1064, 1347
HapII CCGG 2 cut(s) 61, 82
HhaI GCGC 4 cut(s) 69, 90, 810, 880
Hin1II CATG 5 cut(s) 210, 622, 1010, 1306, 1345
Hin6I GCGC 4 cut(s) 67, 88, 808, 878
HinP1I GCGC 4 cut(s) 67, 88, 808, 878
HincII GTYRAC 1 cut(s) 1092
HindII GTYRAC 1 cut(s) 1092
HinfI GANTC 9 cut(s) 44, 108, 130, 274, 380, 761, 920, 1093, 1131
HpaII CCGG 2 cut(s) 61, 82
HphI GGTGA 3 cut(s) 136, 271, 794
Hpy166II GTNNAC 3 cut(s) 262, 495, 1092
Hpy188I TCNGA 8 cut(s) 37, 49, 247, 519, 697, 711, 1003, 1104
Hpy8I GTNNAC 3 cut(s) 262, 495, 1092
HpyAV CCTTC 4 cut(s) 706, 716, 1033, 1103
HpyCH4III ACNGT 5 cut(s) 444, 550, 563, 575, 748
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 5 cut(s) 476, 653, 995, 1087, 1317
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 87, 1353
HpyF3I CTNAG 6 cut(s) 244, 294, 417, 1000, 1253, 1370
HpySE526I ACGT 1 cut(s) 319
Hsp92II CATG 5 cut(s) 210, 622, 1010, 1306, 1345
HspAI GCGC 4 cut(s) 67, 88, 808, 878
KflI GGGWCCC 1 cut(s) 943
Kzo9I GATC 7 cut(s) 283, 514, 594, 670, 826, 1246, 1327
LguI GCTCTTC 1 cut(s) 972
LmnI GCTCC 3 cut(s) 433, 1010, 1177
Lsp1109I GCAGC 1 cut(s) 712
LweI GCATC 6 cut(s) 364, 415, 463, 710, 889, 1169
MaeI CTAG 3 cut(s) 387, 512, 1151
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 4 cut(s) 310, 550, 629, 742
MalI GATC 7 cut(s) 285, 516, 596, 672, 828, 1248, 1329
MboI GATC 7 cut(s) 283, 514, 594, 670, 826, 1246, 1327
MboII GAAGA 4 cut(s) 617, 959, 1085, 1133
MflI RGATCY 3 cut(s) 594, 826, 1327
MhlI GDGCHC 7 cut(s) 57, 163, 375, 468, 960, 1015, 1290
MluCI AATT 8 cut(s) 168, 363, 401, 487, 613, 777, 932, 982
MlyI GAGTC 2 cut(s) 770, 1087
MmeI TCCRAC 1 cut(s) 15
MroXI GAANNNNTTC 1 cut(s) 966
MseI TTAA 7 cut(s) 396, 486, 534, 591, 851, 1299, 1335
MslI CAYNNNNRTG 5 cut(s) 23, 257, 471, 689, 1301
MspA1I CMGCKG 3 cut(s) 219, 416, 767
MspI CCGG 2 cut(s) 61, 82
MvnI CGCG 3 cut(s) 69, 306, 1245
MwoI GCNNNNNNNGC 3 cut(s) 66, 87, 1353
NdeII GATC 7 cut(s) 283, 514, 594, 670, 826, 1246, 1327
NlaIII CATG 5 cut(s) 210, 622, 1010, 1306, 1345
NlaIV GGNNCC 4 cut(s) 149, 161, 944, 945
NmeAIII GCCGAG 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 629
NruI TCGCGA 1 cut(s) 1245
NspI RCATGY 1 cut(s) 1306
NspV TTCGAA 1 cut(s) 923
OliI CACNNNNGTG 1 cut(s) 257
PciI ACATGT 1 cut(s) 1302
PciSI GCTCTTC 1 cut(s) 972
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 966
PfeI GAWTC 7 cut(s) 44, 108, 130, 274, 380, 920, 1131
PkrI GCNGC 3 cut(s) 181, 308, 727
PleI GAGTC 2 cut(s) 769, 1087
PpsI GAGTC 2 cut(s) 769, 1087
PpuMI RGGWCCY 1 cut(s) 943
PscI ACATGT 1 cut(s) 1302
Psp124BI GAGCTC 2 cut(s) 57, 1015
Psp1406I AACGTT 1 cut(s) 319
Psp5II RGGWCCY 1 cut(s) 943
PspN4I GGNNCC 4 cut(s) 149, 161, 944, 945
PspOMI GGGCCC 1 cut(s) 159
PspPI GGNCC 6 cut(s) 147, 159, 160, 841, 943, 1345
PspPPI RGGWCCY 1 cut(s) 943
PstNI CAGNNNCTG 1 cut(s) 144
PsuI RGATCY 3 cut(s) 594, 826, 1327
PvuII CAGCTG 2 cut(s) 416, 767
RruI TCGCGA 1 cut(s) 1245
RsaI GTAC 6 cut(s) 143, 446, 754, 979, 990, 1269
RsaNI GTAC 6 cut(s) 142, 445, 753, 978, 989, 1268
RseI CAYNNNNRTG 5 cut(s) 23, 257, 471, 689, 1301
SacI GAGCTC 2 cut(s) 57, 1015
SapI GCTCTTC 1 cut(s) 972
SaqAI TTAA 7 cut(s) 396, 486, 534, 591, 851, 1299, 1335
SatI GCNGC 3 cut(s) 180, 307, 726
Sau3AI GATC 7 cut(s) 283, 514, 594, 670, 826, 1246, 1327
Sau96I GGNCC 6 cut(s) 147, 159, 160, 841, 943, 1345
ScaI AGTACT 1 cut(s) 754
SchI GAGTC 2 cut(s) 770, 1087
SduI GDGCHC 7 cut(s) 57, 163, 375, 468, 960, 1015, 1290
SfaNI GCATC 6 cut(s) 364, 415, 463, 710, 889, 1169
SfcI CTRYAG 1 cut(s) 571
SfuI TTCGAA 1 cut(s) 923
SinI GGWCC 2 cut(s) 841, 943
SmiMI CAYNNNNRTG 5 cut(s) 23, 257, 471, 689, 1301
SmlI CTYRAG 4 cut(s) 350, 459, 756, 1289
SmoI CTYRAG 4 cut(s) 350, 459, 756, 1289
SpeI ACTAGT 1 cut(s) 386
Sse9I AATT 8 cut(s) 168, 363, 401, 487, 613, 777, 932, 982
SsiI CCGC 8 cut(s) 179, 217, 257, 306, 839, 1154, 1276, 1321
SspMI CTAG 3 cut(s) 387, 512, 1151
SstI GAGCTC 2 cut(s) 57, 1015
TaaI ACNGT 5 cut(s) 444, 550, 563, 575, 748
TaiI ACGT 1 cut(s) 322
TaqI TCGA 3 cut(s) 73, 923, 960
TasI AATT 8 cut(s) 168, 363, 401, 487, 613, 777, 932, 982
TatI WGTACW 3 cut(s) 752, 988, 1267
TauI GCSGC 2 cut(s) 182, 309
TfiI GAWTC 7 cut(s) 44, 108, 130, 274, 380, 920, 1131
Tru1I TTAA 7 cut(s) 396, 486, 534, 591, 851, 1299, 1335
Tru9I TTAA 7 cut(s) 396, 486, 534, 591, 851, 1299, 1335
TscAI CASTG 4 cut(s) 36, 259, 580, 1194
TseFI GTSAC 1 cut(s) 629
TseI GCWGC 1 cut(s) 725
Tsp45I GTSAC 1 cut(s) 629
TspDTI ATGAA 6 cut(s) 20, 540, 558, 618, 635, 753
TspGWI ACGGA 1 cut(s) 420
TspRI CASTG 4 cut(s) 36, 259, 580, 1194
VpaK11BI GGWCC 2 cut(s) 841, 943
XagI CCTNNNNNAGG 1 cut(s) 710
XapI RAATTY 2 cut(s) 363, 982
XbaI TCTAGA 1 cut(s) 511
XceI RCATGY 1 cut(s) 1306
XcmI CCANNNNNNNNNTGG 1 cut(s) 851
XmnI GAANNNNTTC 1 cut(s) 966
XspI CTAG 3 cut(s) 387, 512, 1151
ZrmI AGTACT 1 cut(s) 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.