Rh1CG030700

Protein of unknown function (DUF616)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002998
Physical Location & Seq
Reverse (-)
6066351 .. 6086482
20132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG030700.1

Sequence Viewer

Length: 1254 bp
ATGTTCAACAGCAACAGCGTATCAATCTCAGTCTCCGATGACGAATCCGACGAGCTGGGCCGGATGCGCGTCCGAGTTCGCCGGAAGCGCAAGAAACTCGGCCACCGATTCAAGAACGAGTTCGTTCGCCGAGTGGTGAGGAATCTGGTCAAGTACTGGGCCCTTCTGATTCTTCTCCCAGCCATTGGTTTGCTTCTATACGAGGCTTGGAGTATCGGCTGGAAATCCCCACAGCTCAATAATAAGTCAGAAAAGCCGAGTTTGGTCCACTCGGAACTCAATGCGAGTTCGGAGAAGAAATCCGAAGGCAATTTGAATCGGCTTGATCCTATCACTCGGGTTATTCATGGCGTTAGGGAACGTTGCTTGCAAATCTTACCTCCTGAAGAACTTGAGCATCTGGAAATTCCTGTGCGCGAAGATGCCACTAGTCCTGTTAAGAAATTGTTATACAGAGCGGAGAATGATGGTCTGTTGTTAGGAGGGTACAACACCCGGTCTGAAGAGCACACAGAGGCCACAAGATTTAATTTGTTTACGGGAAATCAAACTCTAGATCAGAGAGGTGAAATGTTTAAGGTAAATGAAACTGTTACCATAAACTGTGGTTTCTACAGTGAAAATGGTGGGTTTAAGATCTCAAATGAAGACAAGAATTACATGCAAAGTTGTGACATTGTAGTCTCCACTTGTGCATTTGGTGGTGGAGATGATCTTTATCAACCCATTGGAATGTCAGAGGCATCCCTTCAGAAGGTTTGCTATGTTGCTTTTTGGGATGAAGTTACTGTAAGTACTCAGGAATCAGCTGAACATAGAATTGGTGAGGATGGATTTATTGGGAGATGGCGCATTGTGGTTGTAAGCGATCTGCCTTTTGCGGACCAAAGGTTAAATGGAAAAATCCCAAAGATGTTGGCGCATCGCCTTTTTCCTCATTCAAAGTATTCCATTTGGGTAGATTCAAAGTCCCAATTTAGGAGGGACCCTTTAGGTGTTCTCGAAGCCCTTCTCTGGCGTACCAATTCAGTACTTGCGATCTCAGAACATGGAGCTCGCAGTAGTGTTTATGATGAGGCAAAGGCAGTTGTCAAGAAAAACAAGGCCAAACCGGAAGAAGTTGAGGTACAGTTGGCTCAGTACCGTCATGATGGATTGCCAGAAGACAAGAGGTTCCATGGAAAGAAAGGTATGTTTTTTTTTTCTATTACTTGTTCTAACATGTTCTCTCGATTGATATGTGGACATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF616 Dirigent

Protein Analysis

417

Amino Acids

47.58

Weight (kDa)

8.68

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOD1_MUCI70 PF04765 167 - 396 3.9e-86 TOD1/MUCI70, glycosyltransferase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 680
AccB7I CCANNNNNTGG 1 cut(s) 185
AccBSI CCGCTC 1 cut(s) 458
AccII CGCG 2 cut(s) 69, 417
AciI CCGC 2 cut(s) 458, 881
AclI AACGTT 1 cut(s) 361
AclWI GGATC 1 cut(s) 320
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 1 cut(s) 405
AcuI CTGAAG 3 cut(s) 405, 522, 734
AfaI GTAC 7 cut(s) 155, 488, 796, 1021, 1032, 1128, 1142
AfiI CCNNNNNNNGG 4 cut(s) 185, 754, 978, 1014
AflIII ACRYGT 1 cut(s) 1221
AgsI TTSAA 5 cut(s) 7, 112, 316, 942, 966
AhlI ACTAGT 1 cut(s) 428
AjuI GAANNNNNNNTTGG 2 cut(s) 804, 836
AluBI AGCT 4 cut(s) 55, 235, 809, 1055
AluI AGCT 4 cut(s) 55, 235, 809, 1055
Alw21I GWGCWC 2 cut(s) 510, 1057
Alw26I GTCTC 2 cut(s) 37, 688
AlwI GGATC 1 cut(s) 320
Ama87I CYCGRG 1 cut(s) 336
AoxI GGCC 5 cut(s) 58, 100, 159, 516, 1104
ApaI GGGCCC 1 cut(s) 163
ApoI RAATTY 1 cut(s) 405
Asp700I GAANNNNTTC 2 cut(s) 119, 1008
AspLEI GCGC 5 cut(s) 69, 90, 417, 852, 922
AspS9I GGNCC 6 cut(s) 58, 159, 160, 265, 883, 985
AsuC2I CCSGG 1 cut(s) 496
AsuHPI GGTGA 3 cut(s) 148, 578, 836
AvaI CYCGRG 1 cut(s) 336
AvaII GGWCC 3 cut(s) 265, 883, 985
BaeGI GKGCMC 1 cut(s) 163
BanII GRGCYC 2 cut(s) 163, 1057
BarI GAAGNNNNNNTAC 2 cut(s) 1110, 1142
BbsI GAAGAC 2 cut(s) 654, 1170
Bbv12I GWGCWC 2 cut(s) 510, 1057
BccI CCATC 4 cut(s) 461, 824, 840, 1145
BcgI CGANNNNNNTGC 2 cut(s) 79, 113
BcnI CCSGG 1 cut(s) 496
BcoDI GTCTC 2 cut(s) 37, 688
BcuI ACTAGT 1 cut(s) 428
BfaI CTAG 2 cut(s) 429, 554
BfmI CTRYAG 1 cut(s) 613
BglII AGATCT 1 cut(s) 636
BmcAI AGTACT 3 cut(s) 155, 796, 1032
Bme1390I CCNGG 1 cut(s) 496
Bme18I GGWCC 3 cut(s) 265, 883, 985
BmeT110I CYCGRG 1 cut(s) 336
BmgT120I GGNCC 6 cut(s) 58, 159, 160, 265, 883, 985
BmiI GGNNCC 4 cut(s) 161, 986, 987, 1175
BmrFI CCNGG 1 cut(s) 496
BmrI ACTGGG 1 cut(s) 166
BmsI GCATC 5 cut(s) 54, 406, 412, 752, 931
BmuI ACTGGG 1 cut(s) 166
BpiI GAAGAC 2 cut(s) 654, 1170
BpuEI CTTGAG 1 cut(s) 413
BpuMI CCSGG 1 cut(s) 496
BsaBI GATNNNNATC 1 cut(s) 717
BsaJI CCNNGG 1 cut(s) 1177
BsaWI WCCGGW 1 cut(s) 1111
Bsc4I CCNNNNNNNGG 4 cut(s) 185, 754, 978, 1014
Bse1I ACTGG 1 cut(s) 161
Bse8I GATNNNNATC 1 cut(s) 717
BseDI CCNNGG 1 cut(s) 1177
BseGI GGATG 5 cut(s) 69, 743, 784, 835, 1246
BseJI GATNNNNATC 1 cut(s) 717
BseLI CCNNNNNNNGG 4 cut(s) 185, 754, 978, 1014
BseMII CTCAG 4 cut(s) 42, 812, 1056, 1151
BseNI ACTGG 1 cut(s) 161
BseSI GKGCMC 1 cut(s) 163
BseYI CCCAGC 2 cut(s) 55, 178
Bsh1236I CGCG 2 cut(s) 69, 417
BshFI GGCC 5 cut(s) 60, 102, 161, 518, 1106
BsiHKAI GWGCWC 2 cut(s) 510, 1057
BsiHKCI CYCGRG 1 cut(s) 336
BsiSI CCGG 4 cut(s) 61, 82, 496, 1112
BslFI GGGAC 2 cut(s) 955, 998
BslI CCNNNNNNNGG 4 cut(s) 185, 754, 978, 1014
BsmAI GTCTC 2 cut(s) 37, 688
BsmFI GGGAC 2 cut(s) 955, 998
BsnI GGCC 5 cut(s) 60, 102, 161, 518, 1106
BsoBI CYCGRG 1 cut(s) 336
Bsp120I GGGCCC 1 cut(s) 159
Bsp1286I GDGCHC 3 cut(s) 163, 510, 1057
Bsp143I GATC 6 cut(s) 325, 556, 636, 712, 868, 1038
Bsp19I CCATGG 1 cut(s) 1177
BspACI CCGC 2 cut(s) 458, 881
BspANI GGCC 5 cut(s) 60, 102, 161, 518, 1106
BspCNI CTCAG 4 cut(s) 41, 811, 1055, 1150
BspFNI CGCG 2 cut(s) 69, 417
BspHI TCATGA 1 cut(s) 1147
BspLI GGNNCC 4 cut(s) 161, 986, 987, 1175
BspPI GGATC 1 cut(s) 320
BspQI GCTCTTC 1 cut(s) 498
BsrBI CCGCTC 1 cut(s) 458
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 1177
BssMI GATC 6 cut(s) 325, 556, 636, 712, 868, 1038
BssT1I CCWWGG 1 cut(s) 1177
Bst4CI ACNGT 6 cut(s) 592, 605, 617, 790, 1131, 1145
Bst6I CTCTTC 1 cut(s) 498
BstC8I GCNNGC 2 cut(s) 368, 1057
BstDEI CTNAG 4 cut(s) 28, 798, 1042, 1137
BstDSI CCRYGG 1 cut(s) 1177
BstENI CCTNNNNNAGG 1 cut(s) 752
BstF5I GGATG 5 cut(s) 69, 743, 784, 835, 1246
BstFNI CGCG 2 cut(s) 69, 417
BstHHI GCGC 5 cut(s) 69, 90, 417, 852, 922
BstKTI GATC 6 cut(s) 328, 559, 639, 715, 871, 1041
BstMAI GTCTC 2 cut(s) 37, 688
BstMBI GATC 6 cut(s) 325, 556, 636, 712, 868, 1038
BstMWI GCNNNNNNNGC 2 cut(s) 66, 87
BstNSI RCATGY 2 cut(s) 664, 1225
BstSCI CCNGG 1 cut(s) 494
BstSFI CTRYAG 1 cut(s) 613
BstSLI GKGCMC 1 cut(s) 163
BstUI CGCG 2 cut(s) 69, 417
BstV2I GAAGAC 2 cut(s) 654, 1170
BstX2I RGATCY 1 cut(s) 636
BstYI RGATCY 1 cut(s) 636
BsuRI GGCC 5 cut(s) 60, 102, 161, 518, 1106
BtgI CCRYGG 1 cut(s) 1177
BtgZI GCGATG 1 cut(s) 908
BtsCI GGATG 5 cut(s) 69, 743, 784, 835, 1246
BtsIMutI CAGTG 1 cut(s) 622
Cac8I GCNNGC 2 cut(s) 368, 1057
CciI TCATGA 1 cut(s) 1147
CfoI GCGC 5 cut(s) 69, 90, 417, 852, 922
Cfr13I GGNCC 6 cut(s) 58, 159, 160, 265, 883, 985
CseI GACGC 1 cut(s) 58
Csp6I GTAC 7 cut(s) 154, 487, 795, 1020, 1031, 1127, 1141
CviAII CATG 7 cut(s) 347, 661, 1049, 1148, 1178, 1222, 1251
CviQI GTAC 7 cut(s) 154, 487, 795, 1020, 1031, 1127, 1141
DdeI CTNAG 4 cut(s) 28, 798, 1042, 1137
DpnI GATC 6 cut(s) 327, 558, 638, 714, 870, 1040
DpnII GATC 6 cut(s) 325, 556, 636, 712, 868, 1038
DrdI GACNNNNNNGTC 1 cut(s) 680
DseDI GACNNNNNNGTC 1 cut(s) 680
EaeI YGGCCR 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 498
EarI CTCTTC 1 cut(s) 498
Ecl136II GAGCTC 1 cut(s) 1055
Eco130I CCWWGG 1 cut(s) 1177
Eco24I GRGCYC 2 cut(s) 163, 1057
Eco47I GGWCC 3 cut(s) 265, 883, 985
Eco53kI GAGCTC 1 cut(s) 1055
Eco57I CTGAAG 3 cut(s) 405, 522, 734
Eco88I CYCGRG 1 cut(s) 336
EcoICRI GAGCTC 1 cut(s) 1055
EcoNI CCTNNNNNAGG 1 cut(s) 752
EcoO109I RGGNCCY 2 cut(s) 160, 985
EcoT14I CCWWGG 1 cut(s) 1177
EcoT38I GRGCYC 2 cut(s) 163, 1057
ErhI CCWWGG 1 cut(s) 1177
FaeI CATG 7 cut(s) 350, 664, 1052, 1151, 1181, 1225, 1254
FaqI GGGAC 2 cut(s) 955, 998
FatI CATG 7 cut(s) 346, 660, 1048, 1147, 1177, 1221, 1250
FokI GGATG 5 cut(s) 76, 730, 791, 842, 1233
FriOI GRGCYC 2 cut(s) 163, 1057
FspBI CTAG 2 cut(s) 429, 554
GlaI GCGC 5 cut(s) 68, 89, 416, 851, 921
GsaI CCCAGC 2 cut(s) 59, 182
HaeIII GGCC 5 cut(s) 60, 102, 161, 518, 1106
HapII CCGG 4 cut(s) 61, 82, 496, 1112
HgaI GACGC 1 cut(s) 58
HhaI GCGC 5 cut(s) 69, 90, 417, 852, 922
Hin1II CATG 7 cut(s) 350, 664, 1052, 1151, 1181, 1225, 1254
Hin6I GCGC 5 cut(s) 67, 88, 415, 850, 920
HinP1I GCGC 5 cut(s) 67, 88, 415, 850, 920
HinfI GANTC 7 cut(s) 44, 108, 142, 169, 316, 803, 962
HpaII CCGG 4 cut(s) 61, 82, 496, 1112
HphI GGTGA 3 cut(s) 148, 578, 836
Hpy166II GTNNAC 3 cut(s) 268, 537, 1244
Hpy188III TCNNGA 9 cut(s) 112, 383, 401, 554, 800, 1001, 1093, 1148, 1230
Hpy8I GTNNAC 3 cut(s) 268, 537, 1244
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 5 cut(s) 173, 299, 748, 758, 1019
HpyCH4III ACNGT 6 cut(s) 592, 605, 617, 790, 1131, 1145
HpyCH4IV ACGT 1 cut(s) 361
HpyCH4V TGCA 3 cut(s) 370, 664, 695
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 87
HpyF3I CTNAG 4 cut(s) 28, 798, 1042, 1137
HpySE526I ACGT 1 cut(s) 361
Hsp92II CATG 7 cut(s) 350, 664, 1052, 1151, 1181, 1225, 1254
HspAI GCGC 5 cut(s) 67, 88, 415, 850, 920
KflI GGGWCCC 1 cut(s) 985
Kzo9I GATC 6 cut(s) 325, 556, 636, 712, 868, 1038
LguI GCTCTTC 1 cut(s) 498
LmnI GCTCC 1 cut(s) 1052
LweI GCATC 5 cut(s) 54, 406, 412, 752, 931
MaeI CTAG 2 cut(s) 429, 554
MaeII ACGT 1 cut(s) 361
MaeIII GTNAC 3 cut(s) 592, 671, 784
MalI GATC 6 cut(s) 327, 558, 638, 714, 870, 1040
MbiI CCGCTC 1 cut(s) 458
MboI GATC 6 cut(s) 325, 556, 636, 712, 868, 1038
MboII GAAGA 8 cut(s) 164, 307, 398, 431, 515, 659, 1127, 1175
MflI RGATCY 1 cut(s) 636
MhlI GDGCHC 3 cut(s) 163, 510, 1057
MluCI AATT 8 cut(s) 310, 405, 443, 529, 655, 819, 974, 1024
MmeI TCCRAC 1 cut(s) 72
MroXI GAANNNNTTC 2 cut(s) 119, 1008
MseI TTAA 5 cut(s) 438, 528, 576, 633, 893
MslI CAYNNNNRTG 1 cut(s) 731
MspA1I CMGCKG 1 cut(s) 809
MspI CCGG 4 cut(s) 61, 82, 496, 1112
MspR9I CCNGG 1 cut(s) 496
MvnI CGCG 2 cut(s) 69, 417
MwoI GCNNNNNNNGC 2 cut(s) 66, 87
NciI CCSGG 1 cut(s) 496
NcoI CCATGG 1 cut(s) 1177
NdeII GATC 6 cut(s) 325, 556, 636, 712, 868, 1038
NlaIII CATG 7 cut(s) 350, 664, 1052, 1151, 1181, 1225, 1254
NlaIV GGNNCC 4 cut(s) 161, 986, 987, 1175
NmeAIII GCCGAG 3 cut(s) 78, 155, 282
NmuCI GTSAC 1 cut(s) 671
NspI RCATGY 2 cut(s) 664, 1225
PagI TCATGA 1 cut(s) 1147
PciI ACATGT 1 cut(s) 1221
PciSI GCTCTTC 1 cut(s) 498
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PdmI GAANNNNTTC 2 cut(s) 119, 1008
PfeI GAWTC 7 cut(s) 44, 108, 142, 169, 316, 803, 962
PflMI CCANNNNNTGG 1 cut(s) 185
PpuMI RGGWCCY 1 cut(s) 985
PscI ACATGT 1 cut(s) 1221
Psp124BI GAGCTC 1 cut(s) 1057
Psp1406I AACGTT 1 cut(s) 361
Psp5II RGGWCCY 1 cut(s) 985
PspFI CCCAGC 2 cut(s) 55, 178
PspN4I GGNNCC 4 cut(s) 161, 986, 987, 1175
PspOMI GGGCCC 1 cut(s) 159
PspPI GGNCC 6 cut(s) 58, 159, 160, 265, 883, 985
PspPPI RGGWCCY 1 cut(s) 985
PsuI RGATCY 1 cut(s) 636
PvuII CAGCTG 1 cut(s) 809
RsaI GTAC 7 cut(s) 155, 488, 796, 1021, 1032, 1128, 1142
RsaNI GTAC 7 cut(s) 154, 487, 795, 1020, 1031, 1127, 1141
RseI CAYNNNNRTG 1 cut(s) 731
SacI GAGCTC 1 cut(s) 1057
SapI GCTCTTC 1 cut(s) 498
SaqAI TTAA 5 cut(s) 438, 528, 576, 633, 893
Sau3AI GATC 6 cut(s) 325, 556, 636, 712, 868, 1038
Sau96I GGNCC 6 cut(s) 58, 159, 160, 265, 883, 985
ScaI AGTACT 3 cut(s) 155, 796, 1032
ScrFI CCNGG 1 cut(s) 496
SduI GDGCHC 3 cut(s) 163, 510, 1057
SfaNI GCATC 5 cut(s) 54, 406, 412, 752, 931
SfcI CTRYAG 1 cut(s) 613
SinI GGWCC 3 cut(s) 265, 883, 985
SmiMI CAYNNNNRTG 1 cut(s) 731
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
SpeI ACTAGT 1 cut(s) 428
Sse9I AATT 8 cut(s) 310, 405, 443, 529, 655, 819, 974, 1024
SsiI CCGC 2 cut(s) 458, 881
SspMI CTAG 2 cut(s) 429, 554
SstI GAGCTC 1 cut(s) 1057
StyD4I CCNGG 1 cut(s) 494
StyI CCWWGG 1 cut(s) 1177
TaaI ACNGT 6 cut(s) 592, 605, 617, 790, 1131, 1145
TaiI ACGT 1 cut(s) 364
TaqI TCGA 2 cut(s) 1002, 1231
TasI AATT 8 cut(s) 310, 405, 443, 529, 655, 819, 974, 1024
TatI WGTACW 3 cut(s) 153, 794, 1030
TfiI GAWTC 7 cut(s) 44, 108, 142, 169, 316, 803, 962
Tru1I TTAA 5 cut(s) 438, 528, 576, 633, 893
Tru9I TTAA 5 cut(s) 438, 528, 576, 633, 893
TscAI CASTG 1 cut(s) 622
TseFI GTSAC 1 cut(s) 671
Tsp45I GTSAC 1 cut(s) 671
TspDTI ATGAA 4 cut(s) 335, 600, 660, 795
TspRI CASTG 1 cut(s) 622
Van91I CCANNNNNTGG 1 cut(s) 185
VpaK11BI GGWCC 3 cut(s) 265, 883, 985
XagI CCTNNNNNAGG 1 cut(s) 752
XapI RAATTY 1 cut(s) 405
XbaI TCTAGA 1 cut(s) 553
XceI RCATGY 2 cut(s) 664, 1225
XcmI CCANNNNNNNNNTGG 1 cut(s) 893
XmnI GAANNNNTTC 2 cut(s) 119, 1008
XspI CTAG 2 cut(s) 429, 554
ZrmI AGTACT 3 cut(s) 155, 796, 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.