Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001879.1

Orthogroup ID

OG0002998

Physical Location & Seq

Genomic Coordinates Forward (+)

85788 .. 88261

Gene Structure 2474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001879.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

atgaacaacaagagcatatcaatggcagtgtcggatgacgaatctgacgagctcggccggttgcgcgttcgagttcgccggaagcgcaagaaactccaccaccgattcaagaacggagtggtgaggaatctggtcaggtactggcccctgttctgggcccttgtaatttttctggcggccatttgtttgcttctgtatgaggcatggactatcggctggaaatccccacaactcaataactcaaaactcactgcggtgaacaatgatttgaatcggcttgatcctatcactcaggttgttcgtggcgttacgcaacgttgcttgccaatcttacctcctgaacaacttgagcatctggaaattcctgtgccccaagattccactagtcctgttaaaaaattgatatacacagctgagaatgatgctccgttgttaggacggtacaacaccctatctcaagagcacacagatgcaacaagatttaatttgtttactggaaatcaaactctagatcagagagatgaaatgtttaaggtaaatgaaactgttactataaactgtggtttctacagtgaaagtggtgggtttaagatctcaaatgaagacaagaattacatgaaaagttgtgacattgtagtctccacttgtgcatttggtagtggagatgatctttatcaacccattggaatgtcagaggcatcccttcagaaggtttgctttgttgctttttgggatgaagttactgtgagtactcaagagtcagctgaacatagaattggtgaggatggatttattgggaaatggcgcattgtggttgtaagagatctcccttttgcggaccaaaggttaaatggaaaaatcccaaagatgttggcgcatcgtctttttcctcattcaaagtattccatttgggtagattcgaagtcccaatttaggagggaccctttaggtgtgctcgaagctcttctctggcgtacaaattctgtacttgcaatctcagaacatggagctcgtagtagcatttatgacgaggcgaaggctgttgtcaagaaaaacaaggccaaacctgaagaagttgagctgcagttgactcaatatcggagtgatggcttgccagaagacaagcgattcaatggaaagaaagctctagcggaagcatctgttatcgtgagggagcatactccactgactaatatgtttatgtgcctctggttcaacgaggcggttcgtttgttcataagcttttaccagaaaagattttcaccttaccattcgagtgcttggttagaagttgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF616 Dirigent

Protein Analysis

432

Amino Acids

49.54

Weight (kDa)

8.79

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42660
fragaria_vesca	FvH4_7g01740 FvH4_7g01740 FvH4_7g01740 FvH4_7g01740
malus_domestica	MD02G1301200.v1.1 MD07G1022800.v1.1
prunus_persica	Prupe.2G023300_v2.0.a1 Prupe.2G023300_v2.0.a1 Prupe.2G023300_v2.0.a1 Prupe.2G023300_v2.0.a1 Prupe.2G023300_v2.0.a1
pyrus_communis	pycom02g25290 pycom07g01730
rosa_chinensis	RchiOBHm_Chr1g0318301 RchiOBHm_Chr4g0418501
rosa_laevigata	RLG00000007859 RLG00000030546
rosa_multiflora	Rmu_sc0000363.1_g000055 Rmu_sc0001879.1_g000028 Rmu_ssc0000308.1_g000013
rosa_roxburghii	Rroxscaffold_4G00329380 Rroxscaffold_4G00329420 Rroxscaffold_4G00329640 Rroxscaffold_5G00361730
rosa_rugosa	Rorug01G0020100 Rorug01G0020100 Rorug04G0153900
rosa_samantha	Rh1AG032200 Rh1BG027900 Rh1CG030700 Rh1DG039000 Rh4AG214900 Rh4BG215500 Rh4CG226600 Rh4DG213500
rosa_wichuraiana	Rw0G010070 Rw1G002580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	635
AccII	CGCG	1 cut(s)	66
AciI	CCGC	5 cut(s)	176, 254, 836, 1151, 1223
AclI	AACGTT	1 cut(s)	316
AclWI	GGATC	1 cut(s)	275
AcoI	YGGCCR	2 cut(s)	55, 177
AcsI	RAATTY	2 cut(s)	360, 979
AcuI	CTGAAG	2 cut(s)	689, 1089
AfaI	GTAC	5 cut(s)	140, 443, 751, 976, 987
AfiI	CCNNNNNNNGG	6 cut(s)	153, 154, 434, 709, 835, 933
AgsI	TTSAA	5 cut(s)	109, 271, 897, 1132, 1216
AhlI	ACTAGT	1 cut(s)	383
AjuI	GAANNNNNNNTTGG	2 cut(s)	759, 791
AleI	CACNNNNGTG	1 cut(s)	254
AluBI	AGCT	8 cut(s)	52, 413, 764, 962, 1010, 1081, 1145, 1242
AluI	AGCT	8 cut(s)	52, 413, 764, 962, 1010, 1081, 1145, 1242
Alw21I	GWGCWC	4 cut(s)	54, 465, 957, 1012
Alw26I	GTCTC	1 cut(s)	643
AlwI	GGATC	1 cut(s)	275
AlwNI	CAGNNNCTG	1 cut(s)	141
AoxI	GGCC	5 cut(s)	55, 143, 156, 177, 1059
ApaI	GGGCCC	1 cut(s)	160
ApeKI	GCWGC	1 cut(s)	1081
ApoI	RAATTY	2 cut(s)	360, 979
Asp700I	GAANNNNTTC	1 cut(s)	963
AspLEI	GCGC	4 cut(s)	66, 87, 807, 877
AspS9I	GGNCC	5 cut(s)	144, 156, 157, 838, 940
AsuHPI	GGTGA	4 cut(s)	133, 268, 791, 1254
AsuII	TTCGAA	1 cut(s)	920
AvaII	GGWCC	2 cut(s)	838, 940
BaeGI	GKGCMC	2 cut(s)	160, 372
BanII	GRGCYC	3 cut(s)	54, 160, 1012
BbsI	GAAGAC	2 cut(s)	609, 1125
Bbv12I	GWGCWC	4 cut(s)	54, 465, 957, 1012
BbvI	GCAGC	1 cut(s)	1068
BccI	CCATC	2 cut(s)	779, 1100
BcoDI	GTCTC	1 cut(s)	643
BcuI	ACTAGT	1 cut(s)	383
BfaI	CTAG	3 cut(s)	384, 509, 1148
BfmI	CTRYAG	2 cut(s)	568, 1082
BglII	AGATCT	2 cut(s)	591, 823
BisI	GCNGC	2 cut(s)	177, 1082
BlsI	GCNGC	2 cut(s)	178, 1083
BmcAI	AGTACT	1 cut(s)	751
Bme18I	GGWCC	2 cut(s)	838, 940
BmgT120I	GGNCC	5 cut(s)	144, 156, 157, 838, 940
BmiI	GGNNCC	4 cut(s)	146, 158, 941, 942
BmsI	GCATC	6 cut(s)	361, 412, 460, 707, 886, 1166
BpiI	GAAGAC	2 cut(s)	609, 1125
Bpu14I	TTCGAA	1 cut(s)	920
BpuEI	CTTGAG	3 cut(s)	368, 441, 738
BsaBI	GATNNNNATC	2 cut(s)	270, 672
Bsc4I	CCNNNNNNNGG	6 cut(s)	153, 154, 434, 709, 835, 933
Bse118I	RCCGGY	1 cut(s)	57
Bse1I	ACTGG	2 cut(s)	146, 499
Bse8I	GATNNNNATC	2 cut(s)	270, 672
BseGI	GGATG	4 cut(s)	40, 698, 739, 790
BseJI	GATNNNNATC	2 cut(s)	270, 672
BseLI	CCNNNNNNNGG	6 cut(s)	153, 154, 434, 709, 835, 933
BseMII	CTCAG	3 cut(s)	305, 405, 1011
BseNI	ACTGG	2 cut(s)	146, 499
BseSI	GKGCMC	2 cut(s)	160, 372
BseX3I	CGGCCG	1 cut(s)	55
BseXI	GCAGC	1 cut(s)	1068
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	5 cut(s)	57, 145, 158, 179, 1061
BsiEI	CGRYCG	1 cut(s)	58
BsiHKAI	GWGCWC	4 cut(s)	54, 465, 957, 1012
BsiSI	CCGG	2 cut(s)	58, 79
BslFI	GGGAC	2 cut(s)	910, 953
BslI	CCNNNNNNNGG	6 cut(s)	153, 154, 434, 709, 835, 933
BsmAI	GTCTC	1 cut(s)	643
BsmFI	GGGAC	2 cut(s)	910, 953
BsnI	GGCC	5 cut(s)	57, 145, 158, 179, 1061
Bsp119I	TTCGAA	1 cut(s)	920
Bsp120I	GGGCCC	1 cut(s)	156
Bsp1286I	GDGCHC	6 cut(s)	54, 160, 372, 465, 957, 1012
Bsp143I	GATC	5 cut(s)	280, 511, 591, 667, 823
BspACI	CCGC	5 cut(s)	176, 254, 836, 1151, 1223
BspANI	GGCC	5 cut(s)	57, 145, 158, 179, 1061
BspCNI	CTCAG	3 cut(s)	304, 406, 1010
BspFNI	CGCG	1 cut(s)	66
BspLI	GGNNCC	4 cut(s)	146, 158, 941, 942
BspMAI	CTGCAG	1 cut(s)	1086
BspPI	GGATC	1 cut(s)	275
BspQI	GCTCTTC	1 cut(s)	969
BspT104I	TTCGAA	1 cut(s)	920
BsrFI	RCCGGY	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	146, 499
BssAI	RCCGGY	1 cut(s)	57
BssMI	GATC	5 cut(s)	280, 511, 591, 667, 823
Bst4CI	ACNGT	5 cut(s)	441, 547, 560, 572, 745
Bst6I	CTCTTC	1 cut(s)	969
BstBI	TTCGAA	1 cut(s)	920
BstC8I	GCNNGC	2 cut(s)	323, 1112
BstDEI	CTNAG	3 cut(s)	291, 414, 997
BstENI	CCTNNNNNAGG	1 cut(s)	707
BstF5I	GGATG	4 cut(s)	40, 698, 739, 790
BstFNI	CGCG	1 cut(s)	66
BstHHI	GCGC	4 cut(s)	66, 87, 807, 877
BstKTI	GATC	5 cut(s)	283, 514, 594, 670, 826
BstMAI	GTCTC	1 cut(s)	643
BstMBI	GATC	5 cut(s)	280, 511, 591, 667, 823
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 84
BstSFI	CTRYAG	2 cut(s)	568, 1082
BstSLI	GKGCMC	2 cut(s)	160, 372
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	1068
BstV2I	GAAGAC	2 cut(s)	609, 1125
BstX2I	RGATCY	2 cut(s)	591, 823
BstYI	RGATCY	2 cut(s)	591, 823
BstZI	CGGCCG	1 cut(s)	55
BsuRI	GGCC	5 cut(s)	57, 145, 158, 179, 1061
BtsCI	GGATG	4 cut(s)	40, 698, 739, 790
BtsI	GCAGTG	2 cut(s)	33, 249
BtsIMutI	CAGTG	4 cut(s)	33, 249, 577, 1184
Cac8I	GCNNGC	2 cut(s)	323, 1112
CaiI	CAGNNNCTG	1 cut(s)	141
CfoI	GCGC	4 cut(s)	66, 87, 807, 877
Cfr10I	RCCGGY	1 cut(s)	57
Cfr13I	GGNCC	5 cut(s)	144, 156, 157, 838, 940
Csp6I	GTAC	5 cut(s)	139, 442, 750, 975, 986
CviAII	CATG	3 cut(s)	204, 616, 1004
CviQI	GTAC	5 cut(s)	139, 442, 750, 975, 986
DdeI	CTNAG	3 cut(s)	291, 414, 997
DpnI	GATC	5 cut(s)	282, 513, 593, 669, 825
DpnII	GATC	5 cut(s)	280, 511, 591, 667, 823
DrdI	GACNNNNNNGTC	1 cut(s)	635
DseDI	GACNNNNNNGTC	1 cut(s)	635
EaeI	YGGCCR	2 cut(s)	55, 177
EagI	CGGCCG	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	969
EarI	CTCTTC	1 cut(s)	969
Ecl136II	GAGCTC	2 cut(s)	52, 1010
EclXI	CGGCCG	1 cut(s)	55
Eco24I	GRGCYC	3 cut(s)	54, 160, 1012
Eco47I	GGWCC	2 cut(s)	838, 940
Eco52I	CGGCCG	1 cut(s)	55
Eco53kI	GAGCTC	2 cut(s)	52, 1010
Eco57I	CTGAAG	2 cut(s)	689, 1089
EcoICRI	GAGCTC	2 cut(s)	52, 1010
EcoNI	CCTNNNNNAGG	1 cut(s)	707
EcoO109I	RGGNCCY	2 cut(s)	157, 940
EcoT38I	GRGCYC	3 cut(s)	54, 160, 1012
FaeI	CATG	3 cut(s)	207, 619, 1007
FalI	AAGNNNNNCTT	2 cut(s)	701, 733
FaqI	GGGAC	2 cut(s)	910, 953
FatI	CATG	3 cut(s)	203, 615, 1003
Fnu4HI	GCNGC	2 cut(s)	177, 1082
FokI	GGATG	4 cut(s)	47, 685, 746, 797
FriOI	GRGCYC	3 cut(s)	54, 160, 1012
Fsp4HI	GCNGC	2 cut(s)	177, 1082
FspBI	CTAG	3 cut(s)	384, 509, 1148
GlaI	GCGC	4 cut(s)	65, 86, 806, 876
GluI	GCNGC	2 cut(s)	177, 1082
HaeIII	GGCC	5 cut(s)	57, 145, 158, 179, 1061
HapII	CCGG	2 cut(s)	58, 79
HhaI	GCGC	4 cut(s)	66, 87, 807, 877
Hin1II	CATG	3 cut(s)	207, 619, 1007
Hin6I	GCGC	4 cut(s)	64, 85, 805, 875
HinP1I	GCGC	4 cut(s)	64, 85, 805, 875
HincII	GTYRAC	1 cut(s)	1089
HindII	GTYRAC	1 cut(s)	1089
HindIII	AAGCTT	1 cut(s)	1240
HinfI	GANTC	9 cut(s)	41, 105, 127, 271, 377, 758, 917, 1090, 1128
HpaII	CCGG	2 cut(s)	58, 79
HphI	GGTGA	4 cut(s)	133, 268, 791, 1254
Hpy166II	GTNNAC	3 cut(s)	259, 492, 1089
Hpy188I	TCNGA	7 cut(s)	34, 46, 516, 694, 708, 1000, 1101
Hpy188III	TCNNGA	8 cut(s)	109, 338, 356, 458, 509, 755, 1048, 1168
Hpy8I	GTNNAC	3 cut(s)	259, 492, 1089
HpyAV	CCTTC	3 cut(s)	703, 713, 1030
HpyCH4III	ACNGT	5 cut(s)	441, 547, 560, 572, 745
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	5 cut(s)	473, 650, 992, 1084, 1295
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 84
HpyF3I	CTNAG	3 cut(s)	291, 414, 997
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	3 cut(s)	207, 619, 1007
HspAI	GCGC	4 cut(s)	64, 85, 805, 875
KflI	GGGWCCC	1 cut(s)	940
Kzo9I	GATC	5 cut(s)	280, 511, 591, 667, 823
LguI	GCTCTTC	1 cut(s)	969
LmnI	GCTCC	3 cut(s)	430, 1007, 1174
Lsp1109I	GCAGC	1 cut(s)	1068
LweI	GCATC	6 cut(s)	361, 412, 460, 707, 886, 1166
MaeI	CTAG	3 cut(s)	384, 509, 1148
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	4 cut(s)	307, 547, 626, 739
MalI	GATC	5 cut(s)	282, 513, 593, 669, 825
MboI	GATC	5 cut(s)	280, 511, 591, 667, 823
MboII	GAAGA	4 cut(s)	614, 956, 1082, 1130
MflI	RGATCY	2 cut(s)	591, 823
MhlI	GDGCHC	6 cut(s)	54, 160, 372, 465, 957, 1012
MluCI	AATT	8 cut(s)	165, 360, 398, 484, 610, 774, 929, 979
MlyI	GAGTC	2 cut(s)	767, 1084
MmeI	TCCRAC	1 cut(s)	12
MroXI	GAANNNNTTC	1 cut(s)	963
MseI	TTAA	5 cut(s)	393, 483, 531, 588, 848
MslI	CAYNNNNRTG	5 cut(s)	20, 254, 468, 686, 1275
MspA1I	CMGCKG	2 cut(s)	413, 764
MspI	CCGG	2 cut(s)	58, 79
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	2 cut(s)	63, 84
NdeII	GATC	5 cut(s)	280, 511, 591, 667, 823
NlaIII	CATG	3 cut(s)	207, 619, 1007
NlaIV	GGNNCC	4 cut(s)	146, 158, 941, 942
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	626
NspV	TTCGAA	1 cut(s)	920
OliI	CACNNNNGTG	1 cut(s)	254
PciSI	GCTCTTC	1 cut(s)	969
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	963
PfeI	GAWTC	7 cut(s)	41, 105, 127, 271, 377, 917, 1128
PkrI	GCNGC	2 cut(s)	178, 1083
PleI	GAGTC	2 cut(s)	766, 1084
PpsI	GAGTC	2 cut(s)	766, 1084
PpuMI	RGGWCCY	1 cut(s)	940
Psp124BI	GAGCTC	2 cut(s)	54, 1012
Psp1406I	AACGTT	1 cut(s)	316
Psp5II	RGGWCCY	1 cut(s)	940
PspN4I	GGNNCC	4 cut(s)	146, 158, 941, 942
PspOMI	GGGCCC	1 cut(s)	156
PspPI	GGNCC	5 cut(s)	144, 156, 157, 838, 940
PspPPI	RGGWCCY	1 cut(s)	940
PstI	CTGCAG	1 cut(s)	1086
PstNI	CAGNNNCTG	1 cut(s)	141
PsuI	RGATCY	2 cut(s)	591, 823
PvuII	CAGCTG	2 cut(s)	413, 764
RsaI	GTAC	5 cut(s)	140, 443, 751, 976, 987
RsaNI	GTAC	5 cut(s)	139, 442, 750, 975, 986
RseI	CAYNNNNRTG	5 cut(s)	20, 254, 468, 686, 1275
SacI	GAGCTC	2 cut(s)	54, 1012
SapI	GCTCTTC	1 cut(s)	969
SaqAI	TTAA	5 cut(s)	393, 483, 531, 588, 848
SatI	GCNGC	2 cut(s)	177, 1082
Sau3AI	GATC	5 cut(s)	280, 511, 591, 667, 823
Sau96I	GGNCC	5 cut(s)	144, 156, 157, 838, 940
ScaI	AGTACT	1 cut(s)	751
SchI	GAGTC	2 cut(s)	767, 1084
SduI	GDGCHC	6 cut(s)	54, 160, 372, 465, 957, 1012
SfaNI	GCATC	6 cut(s)	361, 412, 460, 707, 886, 1166
SfcI	CTRYAG	2 cut(s)	568, 1082
SfuI	TTCGAA	1 cut(s)	920
SinI	GGWCC	2 cut(s)	838, 940
SmiMI	CAYNNNNRTG	5 cut(s)	20, 254, 468, 686, 1275
SmlI	CTYRAG	3 cut(s)	347, 456, 753
SmoI	CTYRAG	3 cut(s)	347, 456, 753
SpeI	ACTAGT	1 cut(s)	383
Sse9I	AATT	8 cut(s)	165, 360, 398, 484, 610, 774, 929, 979
SsiI	CCGC	5 cut(s)	176, 254, 836, 1151, 1223
SspMI	CTAG	3 cut(s)	384, 509, 1148
SstI	GAGCTC	2 cut(s)	54, 1012
TaaI	ACNGT	5 cut(s)	441, 547, 560, 572, 745
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	4 cut(s)	70, 920, 957, 1274
TasI	AATT	8 cut(s)	165, 360, 398, 484, 610, 774, 929, 979
TatI	WGTACW	2 cut(s)	749, 985
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	7 cut(s)	41, 105, 127, 271, 377, 917, 1128
Tru1I	TTAA	5 cut(s)	393, 483, 531, 588, 848
Tru9I	TTAA	5 cut(s)	393, 483, 531, 588, 848
TscAI	CASTG	4 cut(s)	33, 256, 577, 1191
TseFI	GTSAC	1 cut(s)	626
TseI	GCWGC	1 cut(s)	1081
Tsp45I	GTSAC	1 cut(s)	626
TspDTI	ATGAA	7 cut(s)	17, 537, 555, 615, 632, 750, 1225
TspGWI	ACGGA	2 cut(s)	129, 417
TspRI	CASTG	4 cut(s)	33, 256, 577, 1191
VpaK11BI	GGWCC	2 cut(s)	838, 940
XagI	CCTNNNNNAGG	1 cut(s)	707
XapI	RAATTY	2 cut(s)	360, 979
XbaI	TCTAGA	1 cut(s)	508
XcmI	CCANNNNNNNNNTGG	1 cut(s)	848
XmnI	GAANNNNTTC	1 cut(s)	963
XspI	CTAG	3 cut(s)	384, 509, 1148
ZrmI	AGTACT	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.