Rroxscaffold_5G00361730

Protein of unknown function (DUF616)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002998
Physical Location & Seq
Reverse (-)
42458710 .. 42461051
2342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361730.1

Sequence Viewer

Length: 1176 bp
ATGGACTATCGGCTGGAATTCCCACAACTCAATAACTCAGAACTCGCTGCGGTGAACAATGATTTGAATCGGCTTGATCCTATCACTGAGGTTGTTCGTGGCGTTACGCAACGTTGCTTGCCAATCTTACCTCCTGAACAACTTGAGCATCTGGAAATTCCTGTGCCCCAAGATTCCACTAGTCCTGTTAAAAAATTGATATACACAACTGAGAATGATGCTCCGTTGTTAGGACGACGGTACAACACCCTGTCACAAGAGCACACAGACGCAACAAGATTTAATTTGTTTACTGGAAATCAAACTCTAGATCAGAGAGGTGAAATGTTTAAGGTAAATGAAACTGTTACTATAAACTGTGGTTTCTACAGTGAAAATGGTGGGTTTAAGATCTCAAATGAAGACAAGAATTACATGAAAAGTTGTGACATTATAGTCTCCACTTGTGCATTTGGTGGTGGAGATGATCTTTATCAACCCATTGGAATGTCAGAGGCATCCCTTCAGAAGGTTTGCTTTGTTGCTTTTTGGGATGAAGTTACTGTGAGTACTCAAGAGTCAGCTGAACATAGAATTGGTGAGGATGGATTTATTGGGAAATGGCGCATTGTGGTTGTAAGAGATCTCCCTTTTGCGGACCAAAGGTTAAATGGAAAAATCCCAAAGATGTTGGCGCATCGTCTTTTTCCTCATTCAAAGTATTCCATTTGGGTAGATTCGAAGTCCCAATTTAGGAGGGACCCTTTAGGTGTGCTCGAAGCTCTTCTCTGGCGTACAAATTCTGTACTTGCAATCTCAGAACATGGAGCTCGTAGTAGCATTTATGACGAGGCGAAGGCTGTTGTCAAGAAAAACAAGGCCAAACCTGAAGAAGTTGAGGTGCAGTTGACTCAATATCGGAGTGATGGCTTGCCAGAAGACAAGCGATTCAATGGAAAGAAAGCTCTAGCGGAAGCATCTGTTATCGTGAGGGAGCATGCCCCACTGACTAATATGTTTATGTGTCTCTGGTTCAACGAGGTGGTTCGTTTTACTTCTCGCGATCAGCTTAGTTTCCCGTATGTACTATGGCGGTTGAAAGGGCTCAGGAACATTAACATGTTCCCTGTATGCACCCGCAAAGATCTTGTTAATAGCATGGGCCACATTCGCAAGGCTATGCCTCTCAGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF616 Dirigent

Protein Analysis

391

Amino Acids

44.6

Weight (kDa)

7.08

Isoelectric Point (pI)

41.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOD1_MUCI70 PF04765 87 - 382 3.7e-119 TOD1/MUCI70, glycosyltransferase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 434
AccII CGCG 1 cut(s) 1041
AciI CCGC 5 cut(s) 50, 635, 950, 1072, 1117
AclI AACGTT 1 cut(s) 112
AclWI GGATC 1 cut(s) 71
AcsI RAATTY 3 cut(s) 17, 156, 778
AcuI CTGAAG 2 cut(s) 488, 888
AfaI GTAC 6 cut(s) 242, 550, 775, 786, 1065, 1171
AfiI CCNNNNNNNGG 4 cut(s) 230, 508, 634, 732
AflIII ACRYGT 1 cut(s) 1098
AgsI TTSAA 5 cut(s) 67, 696, 931, 1015, 1078
AhlI ACTAGT 1 cut(s) 179
AjuI GAANNNNNNNTTGG 2 cut(s) 558, 590
AluBI AGCT 5 cut(s) 563, 761, 809, 944, 1048
AluI AGCT 5 cut(s) 563, 761, 809, 944, 1048
Alw21I GWGCWC 3 cut(s) 264, 756, 811
Alw26I GTCTC 2 cut(s) 442, 1010
AlwI GGATC 1 cut(s) 71
AoxI GGCC 2 cut(s) 858, 1141
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 3 cut(s) 17, 156, 778
Asp700I GAANNNNTTC 1 cut(s) 762
AspLEI GCGC 2 cut(s) 606, 676
AspS9I GGNCC 3 cut(s) 637, 739, 1141
AsuHPI GGTGA 3 cut(s) 64, 332, 590
AsuII TTCGAA 1 cut(s) 719
AvaII GGWCC 2 cut(s) 637, 739
BaeGI GKGCMC 1 cut(s) 168
BanII GRGCYC 2 cut(s) 811, 1086
BbsI GAAGAC 2 cut(s) 408, 924
Bbv12I GWGCWC 3 cut(s) 264, 756, 811
BbvI GCAGC 1 cut(s) 34
BccI CCATC 2 cut(s) 578, 899
BcoDI GTCTC 2 cut(s) 442, 1010
BcuI ACTAGT 1 cut(s) 179
BfaI CTAG 3 cut(s) 180, 308, 947
BfmI CTRYAG 1 cut(s) 367
BglII AGATCT 3 cut(s) 390, 622, 1123
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
BmcAI AGTACT 2 cut(s) 550, 1171
Bme18I GGWCC 2 cut(s) 637, 739
BmgT120I GGNCC 3 cut(s) 637, 739, 1141
BmiI GGNNCC 2 cut(s) 740, 741
BmsI GCATC 5 cut(s) 157, 208, 506, 685, 965
BpiI GAAGAC 2 cut(s) 408, 924
Bpu10I CCTNAGC 1 cut(s) 1085
Bpu14I TTCGAA 1 cut(s) 719
BpuEI CTTGAG 2 cut(s) 164, 537
BsaBI GATNNNNATC 2 cut(s) 66, 471
Bsc4I CCNNNNNNNGG 4 cut(s) 230, 508, 634, 732
Bse1I ACTGG 1 cut(s) 298
Bse8I GATNNNNATC 2 cut(s) 66, 471
BseGI GGATG 3 cut(s) 497, 538, 589
BseJI GATNNNNATC 2 cut(s) 66, 471
BseLI CCNNNNNNNGG 4 cut(s) 230, 508, 634, 732
BseMII CTCAG 5 cut(s) 51, 78, 201, 810, 1099
BseNI ACTGG 1 cut(s) 298
BseSI GKGCMC 1 cut(s) 168
BseXI GCAGC 1 cut(s) 34
BsgI GTGCAG 1 cut(s) 902
Bsh1236I CGCG 1 cut(s) 1041
BshFI GGCC 2 cut(s) 860, 1143
BsiHKAI GWGCWC 3 cut(s) 264, 756, 811
BslFI GGGAC 2 cut(s) 709, 752
BslI CCNNNNNNNGG 4 cut(s) 230, 508, 634, 732
BsmAI GTCTC 2 cut(s) 442, 1010
BsmFI GGGAC 2 cut(s) 709, 752
BsnI GGCC 2 cut(s) 860, 1143
Bsp119I TTCGAA 1 cut(s) 719
Bsp1286I GDGCHC 5 cut(s) 168, 264, 756, 811, 1086
Bsp143I GATC 7 cut(s) 76, 310, 390, 466, 622, 1042, 1123
Bsp68I TCGCGA 1 cut(s) 1041
BspACI CCGC 5 cut(s) 50, 635, 950, 1072, 1117
BspANI GGCC 2 cut(s) 860, 1143
BspCNI CTCAG 5 cut(s) 50, 79, 202, 809, 1098
BspFNI CGCG 1 cut(s) 1041
BspLI GGNNCC 2 cut(s) 740, 741
BspPI GGATC 1 cut(s) 71
BspQI GCTCTTC 1 cut(s) 768
BspT104I TTCGAA 1 cut(s) 719
BsrI ACTGG 1 cut(s) 298
BssMI GATC 7 cut(s) 76, 310, 390, 466, 622, 1042, 1123
Bst4CI ACNGT 5 cut(s) 240, 346, 359, 371, 544
Bst6I CTCTTC 1 cut(s) 768
BstBI TTCGAA 1 cut(s) 719
BstC8I GCNNGC 3 cut(s) 119, 911, 978
BstDEI CTNAG 7 cut(s) 37, 87, 210, 796, 1049, 1085, 1166
BstENI CCTNNNNNAGG 1 cut(s) 506
BstF5I GGATG 3 cut(s) 497, 538, 589
BstFNI CGCG 1 cut(s) 1041
BstHHI GCGC 2 cut(s) 606, 676
BstKTI GATC 7 cut(s) 79, 313, 393, 469, 625, 1045, 1126
BstMAI GTCTC 2 cut(s) 442, 1010
BstMBI GATC 7 cut(s) 76, 310, 390, 466, 622, 1042, 1123
BstMWI GCNNNNNNNGC 1 cut(s) 1149
BstNSI RCATGY 2 cut(s) 980, 1102
BstSFI CTRYAG 1 cut(s) 367
BstSLI GKGCMC 1 cut(s) 168
BstUI CGCG 1 cut(s) 1041
BstV1I GCAGC 1 cut(s) 34
BstV2I GAAGAC 2 cut(s) 408, 924
BstX2I RGATCY 3 cut(s) 390, 622, 1123
BstYI RGATCY 3 cut(s) 390, 622, 1123
BsuRI GGCC 2 cut(s) 860, 1143
BtsCI GGATG 3 cut(s) 497, 538, 589
BtsIMutI CAGTG 3 cut(s) 84, 376, 983
BtuMI TCGCGA 1 cut(s) 1041
Cac8I GCNNGC 3 cut(s) 119, 911, 978
CfoI GCGC 2 cut(s) 606, 676
Cfr13I GGNCC 3 cut(s) 637, 739, 1141
CseI GACGC 1 cut(s) 278
Csp6I GTAC 6 cut(s) 241, 549, 774, 785, 1064, 1170
CviAII CATG 5 cut(s) 415, 803, 977, 1099, 1138
CviQI GTAC 6 cut(s) 241, 549, 774, 785, 1064, 1170
DdeI CTNAG 7 cut(s) 37, 87, 210, 796, 1049, 1085, 1166
DpnI GATC 7 cut(s) 78, 312, 392, 468, 624, 1044, 1125
DpnII GATC 7 cut(s) 76, 310, 390, 466, 622, 1042, 1123
DrdI GACNNNNNNGTC 1 cut(s) 434
DseDI GACNNNNNNGTC 1 cut(s) 434
Eam1104I CTCTTC 1 cut(s) 768
EarI CTCTTC 1 cut(s) 768
Ecl136II GAGCTC 1 cut(s) 809
Eco24I GRGCYC 2 cut(s) 811, 1086
Eco47I GGWCC 2 cut(s) 637, 739
Eco53kI GAGCTC 1 cut(s) 809
Eco57I CTGAAG 2 cut(s) 488, 888
EcoICRI GAGCTC 1 cut(s) 809
EcoNI CCTNNNNNAGG 1 cut(s) 506
EcoO109I RGGNCCY 1 cut(s) 739
EcoRI GAATTC 1 cut(s) 17
EcoT38I GRGCYC 2 cut(s) 811, 1086
FaeI CATG 5 cut(s) 418, 806, 980, 1102, 1141
FalI AAGNNNNNCTT 2 cut(s) 500, 532
FaqI GGGAC 2 cut(s) 709, 752
FatI CATG 5 cut(s) 414, 802, 976, 1098, 1137
FauI CCCGC 1 cut(s) 1124
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 3 cut(s) 484, 545, 596
FriOI GRGCYC 2 cut(s) 811, 1086
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 3 cut(s) 180, 308, 947
GlaI GCGC 2 cut(s) 605, 675
GluI GCNGC 1 cut(s) 48
HaeIII GGCC 2 cut(s) 860, 1143
HgaI GACGC 1 cut(s) 278
HhaI GCGC 2 cut(s) 606, 676
Hin1II CATG 5 cut(s) 418, 806, 980, 1102, 1141
Hin6I GCGC 2 cut(s) 604, 674
HinP1I GCGC 2 cut(s) 604, 674
HincII GTYRAC 1 cut(s) 888
HindII GTYRAC 1 cut(s) 888
HinfI GANTC 6 cut(s) 67, 173, 557, 716, 889, 927
HphI GGTGA 3 cut(s) 64, 332, 590
Hpy166II GTNNAC 3 cut(s) 55, 291, 888
Hpy188I TCNGA 6 cut(s) 40, 315, 493, 507, 799, 900
Hpy188III TCNNGA 8 cut(s) 134, 152, 308, 554, 847, 967, 1040, 1087
Hpy8I GTNNAC 3 cut(s) 55, 291, 888
Hpy99I CGWCG 1 cut(s) 240
HpyAV CCTTC 3 cut(s) 502, 512, 829
HpyCH4III ACNGT 5 cut(s) 240, 346, 359, 371, 544
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 4 cut(s) 449, 791, 883, 1113
HpyF10VI GCNNNNNNNGC 1 cut(s) 1149
HpyF3I CTNAG 7 cut(s) 37, 87, 210, 796, 1049, 1085, 1166
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 5 cut(s) 418, 806, 980, 1102, 1141
HspAI GCGC 2 cut(s) 604, 674
KflI GGGWCCC 1 cut(s) 739
Kzo9I GATC 7 cut(s) 76, 310, 390, 466, 622, 1042, 1123
LguI GCTCTTC 1 cut(s) 768
LmnI GCTCC 3 cut(s) 226, 806, 973
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 5 cut(s) 157, 208, 506, 685, 965
MaeI CTAG 3 cut(s) 180, 308, 947
MaeII ACGT 1 cut(s) 112
MaeIII GTNAC 5 cut(s) 103, 252, 346, 425, 538
MalI GATC 7 cut(s) 78, 312, 392, 468, 624, 1044, 1125
MboI GATC 7 cut(s) 76, 310, 390, 466, 622, 1042, 1123
MboII GAAGA 4 cut(s) 413, 755, 881, 929
MflI RGATCY 3 cut(s) 390, 622, 1123
MhlI GDGCHC 5 cut(s) 168, 264, 756, 811, 1086
MluCI AATT 8 cut(s) 17, 156, 194, 283, 409, 573, 728, 778
MlyI GAGTC 2 cut(s) 566, 883
MroXI GAANNNNTTC 1 cut(s) 762
MseI TTAA 7 cut(s) 189, 282, 330, 387, 647, 1095, 1131
MslI CAYNNNNRTG 2 cut(s) 485, 1097
MspA1I CMGCKG 1 cut(s) 563
MvnI CGCG 1 cut(s) 1041
MwoI GCNNNNNNNGC 1 cut(s) 1149
NdeII GATC 7 cut(s) 76, 310, 390, 466, 622, 1042, 1123
NlaIII CATG 5 cut(s) 418, 806, 980, 1102, 1141
NlaIV GGNNCC 2 cut(s) 740, 741
NmuCI GTSAC 2 cut(s) 252, 425
NruI TCGCGA 1 cut(s) 1041
NspI RCATGY 2 cut(s) 980, 1102
NspV TTCGAA 1 cut(s) 719
PaeI GCATGC 1 cut(s) 980
PciI ACATGT 1 cut(s) 1098
PciSI GCTCTTC 1 cut(s) 768
PdmI GAANNNNTTC 1 cut(s) 762
PfeI GAWTC 4 cut(s) 67, 173, 716, 927
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 2 cut(s) 565, 883
PpsI GAGTC 2 cut(s) 565, 883
PpuMI RGGWCCY 1 cut(s) 739
PscI ACATGT 1 cut(s) 1098
Psp124BI GAGCTC 1 cut(s) 811
Psp1406I AACGTT 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 739
PspN4I GGNNCC 2 cut(s) 740, 741
PspPI GGNCC 3 cut(s) 637, 739, 1141
PspPPI RGGWCCY 1 cut(s) 739
PsuI RGATCY 3 cut(s) 390, 622, 1123
PvuII CAGCTG 1 cut(s) 563
RruI TCGCGA 1 cut(s) 1041
RsaI GTAC 6 cut(s) 242, 550, 775, 786, 1065, 1171
RsaNI GTAC 6 cut(s) 241, 549, 774, 785, 1064, 1170
RseI CAYNNNNRTG 2 cut(s) 485, 1097
SacI GAGCTC 1 cut(s) 811
SapI GCTCTTC 1 cut(s) 768
SaqAI TTAA 7 cut(s) 189, 282, 330, 387, 647, 1095, 1131
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 7 cut(s) 76, 310, 390, 466, 622, 1042, 1123
Sau96I GGNCC 3 cut(s) 637, 739, 1141
ScaI AGTACT 2 cut(s) 550, 1171
SchI GAGTC 2 cut(s) 566, 883
SduI GDGCHC 5 cut(s) 168, 264, 756, 811, 1086
SfaNI GCATC 5 cut(s) 157, 208, 506, 685, 965
SfcI CTRYAG 1 cut(s) 367
SfuI TTCGAA 1 cut(s) 719
SinI GGWCC 2 cut(s) 637, 739
SmiMI CAYNNNNRTG 2 cut(s) 485, 1097
SmlI CTYRAG 2 cut(s) 143, 552
SmoI CTYRAG 2 cut(s) 143, 552
SpeI ACTAGT 1 cut(s) 179
SphI GCATGC 1 cut(s) 980
Sse9I AATT 8 cut(s) 17, 156, 194, 283, 409, 573, 728, 778
SsiI CCGC 5 cut(s) 50, 635, 950, 1072, 1117
SspMI CTAG 3 cut(s) 180, 308, 947
SstI GAGCTC 1 cut(s) 811
TaaI ACNGT 5 cut(s) 240, 346, 359, 371, 544
TaiI ACGT 1 cut(s) 115
TaqI TCGA 2 cut(s) 719, 756
TasI AATT 8 cut(s) 17, 156, 194, 283, 409, 573, 728, 778
TatI WGTACW 4 cut(s) 548, 784, 1063, 1169
TfiI GAWTC 4 cut(s) 67, 173, 716, 927
Tru1I TTAA 7 cut(s) 189, 282, 330, 387, 647, 1095, 1131
Tru9I TTAA 7 cut(s) 189, 282, 330, 387, 647, 1095, 1131
TscAI CASTG 3 cut(s) 91, 376, 990
TseFI GTSAC 2 cut(s) 252, 425
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 2 cut(s) 252, 425
TspDTI ATGAA 4 cut(s) 354, 414, 431, 549
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 3 cut(s) 91, 376, 990
VpaK11BI GGWCC 2 cut(s) 637, 739
XagI CCTNNNNNAGG 1 cut(s) 506
XapI RAATTY 3 cut(s) 17, 156, 778
XbaI TCTAGA 1 cut(s) 307
XceI RCATGY 2 cut(s) 980, 1102
XcmI CCANNNNNNNNNTGG 1 cut(s) 647
XmnI GAANNNNTTC 1 cut(s) 762
XspI CTAG 3 cut(s) 180, 308, 947
ZrmI AGTACT 2 cut(s) 550, 1171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.