pycom07g01730

Protein of unknown function (DUF616)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
1352721 .. 1355921
3201 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g01730.5

Sequence Viewer

Length: 1449 bp
ATGTTCAGCAACAACAGCATATCAATCTCAGTCTCCGACGACGAAGCGGACGAACTCGGCCGGATGCGAGTTCGAGTTCGAAGAAAGCGCAAGAAACTCGGCCACCGACTCAAGAACGAGTTCCTCTACCGAGTCACTAGAAAGCTCGTCAGGTACTGGGCACTTCTCATTTTTCTCCCGGCCCTTGGGTTGCTCTTATACGAGATTTCGAGGATTGGTAGGAAGCCGAGTTTGGTGGTGAAATCGGAACTCAGTGCGCCGGAAAAGCCGAGTTTGGTTGGCGCGGAAACGGTGAAGAACTCGAGTTTGGAGAAGAAATCGGAGGGGAATTTGAATCGGCTCGATCATACGACTCGGGTTGTTGGAGGCGTTAGACAACGTTGTTTGGACATCCTATCTCCTGAAGAACTTGAGCATCTGGAAATTCCTATTCGCGAAGATTCCAATACTCCTGTTAAGAAAGTGGTATACATATCAGAGAATGACACTCCGTTTTCAGGAGGGAACAACAGTCTTTCTCAGGAGCACACACAGGCCCCAAGATTTAATTCATTTACCGGAAGTCAAACTCTGGATCAGAGAGCGAAATCGTTTAAGGTAAATGAAACTGTTACTATGAACTGTGGTTTCTACAGTGAAAATGGAGGGTTTAAAATCTCAAATGAAGACAAGGGGTACATGGATAGTTGCAAGGTTGTAGTGTCCACATGTGCATTTGGTGGTGGACTTTCTTCGATCGATCTTTATCAGCCTATTGGAATGTCAGATGCAACACTTCGAAAGGTTTGCTATGTCGCTTTTTGGGATGAAATTACTCTAAGTACACAGGAAGCGGCTGAACATAGAATTGATGGGAATGGATTTATTGGGAAATGGCGCATTGTGGTTGTTAAAGATCGTCCCTTTTCGGACCAAAGGTTAAACGGAAAGATCCCAAAGATGTTGCCCCATCGTCTTTTTCCTCATGCAAAGTATTCCATTTGGGTAGATTCAAAGTCCCAATTTAGGAGGGACCCTTTAGGTGTGCTCGAAGCCCTACTTTGGCGTTCAAATTCTGTATTTGCGATCTCAGAACATGGAGCTCGCAGTAGCGTTTATGATGAAGCGAAGGCTGTTGTGAAAAAAAACAAGGCCAAACCAGAAGAAGTTGAGGTGCAATTGACTCAATACCGCCATGATGGCTTGCCAGATGACAAGAGGTTCAACGGAAAGAAGGCTTTATCTGAAGCATCTGTTATCGTGAGGGAGCATACACCATTGACTAATATGTTTATGTGCCTCTGGTTCAACGAGGTGGTTCGGTTCACTTCTCGTGATCAGCTTAGTTTCCCATATGTATTATGGCGGTTGAAAGTGCTCAAGAAGATAAATATATTCCCTGTATGTACCCGGAAAGATCTTGTTAATAGTATGGGTCACATACGCAAGGCTAAGCCCCTTAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

483

Amino Acids

54.92

Weight (kDa)

9.63

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 468
AccII CGCG 2 cut(s) 284, 435
AciI CCGC 5 cut(s) 47, 284, 833, 1171, 1345
AclI AACGTT 1 cut(s) 379
AclWI GGATC 2 cut(s) 582, 925
AcoI YGGCCR 2 cut(s) 58, 100
AcsI RAATTY 3 cut(s) 328, 423, 1051
AcuI CTGAAG 2 cut(s) 423, 1245
AfaI GTAC 4 cut(s) 155, 677, 823, 1387
AfiI CCNNNNNNNGG 4 cut(s) 185, 497, 1005, 1041
AflIII ACRYGT 1 cut(s) 707
AgsI TTSAA 6 cut(s) 334, 993, 1050, 1204, 1288, 1351
AjuI GAANNNNNNNTTGG 6 cut(s) 215, 247, 290, 322, 532, 564
AluBI AGCT 3 cut(s) 145, 1082, 1321
AluI AGCT 3 cut(s) 145, 1082, 1321
Alw21I GWGCWC 4 cut(s) 528, 1029, 1084, 1359
Alw26I GTCTC 1 cut(s) 37
AlwI GGATC 2 cut(s) 582, 925
AlwNI CAGNNNCTG 1 cut(s) 156
Ama87I CYCGRG 2 cut(s) 301, 354
AoxI GGCC 5 cut(s) 58, 100, 180, 534, 1131
ApoI RAATTY 3 cut(s) 328, 423, 1051
Asp700I GAANNNNTTC 1 cut(s) 119
AspLEI GCGC 4 cut(s) 90, 259, 284, 879
AspS9I GGNCC 4 cut(s) 181, 535, 910, 1012
AsuC2I CCSGG 2 cut(s) 179, 1390
AsuHPI GGTGA 2 cut(s) 250, 304
AsuII TTCGAA 2 cut(s) 79, 778
AvaI CYCGRG 2 cut(s) 301, 354
AvaII GGWCC 2 cut(s) 910, 1012
BaeGI GKGCMC 1 cut(s) 163
BanII GRGCYC 1 cut(s) 1084
BauI CACGAG 1 cut(s) 1311
BbsI GAAGAC 1 cut(s) 672
Bbv12I GWGCWC 4 cut(s) 528, 1029, 1084, 1359
BccI CCATC 3 cut(s) 845, 957, 1172
BcgI CGANNNNNNTGC 4 cut(s) 79, 113, 768, 802
BclI TGATCA 1 cut(s) 1315
BcnI CCSGG 2 cut(s) 179, 1390
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 631
BglI GCCNNNNNGGC 1 cut(s) 1179
BglII AGATCT 1 cut(s) 1396
BisI GCNGC 1 cut(s) 834
BlpI GCTNAGC 1 cut(s) 1431
BlsI GCNGC 1 cut(s) 835
Bme1390I CCNGG 2 cut(s) 179, 1390
Bme18I GGWCC 2 cut(s) 910, 1012
BmeT110I CYCGRG 2 cut(s) 301, 354
BmgT120I GGNCC 4 cut(s) 181, 535, 910, 1012
BmiI GGNNCC 3 cut(s) 537, 1013, 1014
BmrFI CCNGG 2 cut(s) 179, 1390
BmrI ACTGGG 1 cut(s) 166
BmsI GCATC 4 cut(s) 54, 424, 757, 1238
BmuI ACTGGG 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 672
Bpu1102I GCTNAGC 1 cut(s) 1431
Bpu14I TTCGAA 2 cut(s) 79, 778
BpuEI CTTGAG 3 cut(s) 95, 431, 1343
BpuMI CCSGG 2 cut(s) 179, 1390
Bsa29I ATCGAT 1 cut(s) 738
BsaBI GATNNNNATC 1 cut(s) 744
BsaJI CCNNGG 1 cut(s) 184
BsaWI WCCGGW 1 cut(s) 557
Bsc4I CCNNNNNNNGG 4 cut(s) 185, 497, 1005, 1041
Bse1I ACTGG 1 cut(s) 161
Bse8I GATNNNNATC 1 cut(s) 744
BseCI ATCGAT 1 cut(s) 738
BseDI CCNNGG 1 cut(s) 184
BseGI GGATG 3 cut(s) 69, 390, 811
BseJI GATNNNNATC 1 cut(s) 744
BseLI CCNNNNNNNGG 4 cut(s) 185, 497, 1005, 1041
BseMII CTCAG 4 cut(s) 42, 265, 533, 1083
BseNI ACTGG 1 cut(s) 161
BseSI GKGCMC 1 cut(s) 163
BseX3I CGGCCG 1 cut(s) 58
Bsh1236I CGCG 2 cut(s) 284, 435
Bsh1285I CGRYCG 2 cut(s) 61, 738
BshFI GGCC 5 cut(s) 60, 102, 182, 536, 1133
BshVI ATCGAT 1 cut(s) 738
BsiEI CGRYCG 2 cut(s) 61, 738
BsiHKAI GWGCWC 4 cut(s) 528, 1029, 1084, 1359
BsiHKCI CYCGRG 2 cut(s) 301, 354
BsiSI CCGG 5 cut(s) 61, 179, 260, 558, 1390
BslFI GGGAC 3 cut(s) 885, 982, 1025
BslI CCNNNNNNNGG 4 cut(s) 185, 497, 1005, 1041
BsmAI GTCTC 1 cut(s) 37
BsmFI GGGAC 3 cut(s) 885, 982, 1025
BsnI GGCC 5 cut(s) 60, 102, 182, 536, 1133
BsoBI CYCGRG 2 cut(s) 301, 354
Bsp119I TTCGAA 2 cut(s) 79, 778
Bsp1286I GDGCHC 5 cut(s) 163, 528, 1029, 1084, 1359
Bsp143I GATC 9 cut(s) 343, 574, 735, 739, 895, 930, 1065, 1315, 1396
Bsp1720I GCTNAGC 1 cut(s) 1431
Bsp68I TCGCGA 1 cut(s) 435
BspACI CCGC 5 cut(s) 47, 284, 833, 1171, 1345
BspANI GGCC 5 cut(s) 60, 102, 182, 536, 1133
BspCNI CTCAG 4 cut(s) 41, 264, 532, 1082
BspDI ATCGAT 1 cut(s) 738
BspFNI CGCG 2 cut(s) 284, 435
BspLI GGNNCC 3 cut(s) 537, 1013, 1014
BspPI GGATC 2 cut(s) 582, 925
BspT104I TTCGAA 2 cut(s) 79, 778
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 9 cut(s) 343, 574, 735, 739, 895, 930, 1065, 1315, 1396
BssNAI GTATAC 1 cut(s) 469
BssSI CACGAG 1 cut(s) 1311
BssT1I CCWWGG 1 cut(s) 184
Bst1107I GTATAC 1 cut(s) 469
Bst2BI CACGAG 1 cut(s) 1311
Bst4CI ACNGT 5 cut(s) 292, 512, 610, 623, 635
BstBI TTCGAA 2 cut(s) 79, 778
BstC8I GCNNGC 2 cut(s) 1084, 1184
BstDEI CTNAG 8 cut(s) 28, 251, 519, 818, 1069, 1322, 1431, 1439
BstF5I GGATG 3 cut(s) 69, 390, 811
BstFNI CGCG 2 cut(s) 284, 435
BstHHI GCGC 4 cut(s) 90, 259, 284, 879
BstKTI GATC 9 cut(s) 346, 577, 738, 742, 898, 933, 1068, 1318, 1399
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 9 cut(s) 343, 574, 735, 739, 895, 930, 1065, 1315, 1396
BstMCI CGRYCG 2 cut(s) 61, 738
BstMWI GCNNNNNNNGC 3 cut(s) 15, 265, 1179
BstNSI RCATGY 1 cut(s) 711
BstSCI CCNGG 2 cut(s) 177, 1388
BstSFI CTRYAG 1 cut(s) 631
BstSLI GKGCMC 1 cut(s) 163
BstUI CGCG 2 cut(s) 284, 435
BstV2I GAAGAC 1 cut(s) 672
BstX2I RGATCY 2 cut(s) 930, 1396
BstYI RGATCY 2 cut(s) 930, 1396
BstZ17I GTATAC 1 cut(s) 469
BstZI CGGCCG 1 cut(s) 58
Bsu15I ATCGAT 1 cut(s) 738
BsuRI GGCC 5 cut(s) 60, 102, 182, 536, 1133
BsuTUI ATCGAT 1 cut(s) 738
BtsCI GGATG 3 cut(s) 69, 390, 811
BtsIMutI CAGTG 2 cut(s) 259, 640
BtuMI TCGCGA 1 cut(s) 435
Cac8I GCNNGC 2 cut(s) 1084, 1184
CaiI CAGNNNCTG 1 cut(s) 156
CfoI GCGC 4 cut(s) 90, 259, 284, 879
Cfr13I GGNCC 4 cut(s) 181, 535, 910, 1012
ClaI ATCGAT 1 cut(s) 738
Csp6I GTAC 4 cut(s) 154, 676, 822, 1386
CviAII CATG 5 cut(s) 679, 708, 965, 1076, 1175
CviQI GTAC 4 cut(s) 154, 676, 822, 1386
DdeI CTNAG 8 cut(s) 28, 251, 519, 818, 1069, 1322, 1431, 1439
DpnI GATC 9 cut(s) 345, 576, 737, 741, 897, 932, 1067, 1317, 1398
DpnII GATC 9 cut(s) 343, 574, 735, 739, 895, 930, 1065, 1315, 1396
DraI TTTAAA 1 cut(s) 652
EaeI YGGCCR 2 cut(s) 58, 100
EagI CGGCCG 1 cut(s) 58
Ecl136II GAGCTC 1 cut(s) 1082
EclXI CGGCCG 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 1084
Eco47I GGWCC 2 cut(s) 910, 1012
Eco52I CGGCCG 1 cut(s) 58
Eco53kI GAGCTC 1 cut(s) 1082
Eco57I CTGAAG 2 cut(s) 423, 1245
Eco88I CYCGRG 2 cut(s) 301, 354
EcoICRI GAGCTC 1 cut(s) 1082
EcoO109I RGGNCCY 2 cut(s) 535, 1012
EcoT14I CCWWGG 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 1084
ErhI CCWWGG 1 cut(s) 184
FaeI CATG 5 cut(s) 682, 711, 968, 1079, 1178
FalI AAGNNNNNCTT 2 cut(s) 1023, 1055
FaqI GGGAC 3 cut(s) 885, 982, 1025
FatI CATG 5 cut(s) 678, 707, 964, 1075, 1174
FauNDI CATATG 1 cut(s) 1333
FbaI TGATCA 1 cut(s) 1315
FblI GTMKAC 1 cut(s) 468
Fnu4HI GCNGC 1 cut(s) 834
FokI GGATG 3 cut(s) 76, 377, 818
FriOI GRGCYC 1 cut(s) 1084
Fsp4HI GCNGC 1 cut(s) 834
FspBI CTAG 1 cut(s) 138
GlaI GCGC 4 cut(s) 89, 258, 283, 878
GluI GCNGC 1 cut(s) 834
HaeIII GGCC 5 cut(s) 60, 102, 182, 536, 1133
HapII CCGG 5 cut(s) 61, 179, 260, 558, 1390
HhaI GCGC 4 cut(s) 90, 259, 284, 879
Hin1II CATG 5 cut(s) 682, 711, 968, 1079, 1178
Hin6I GCGC 4 cut(s) 88, 257, 282, 877
HinP1I GCGC 4 cut(s) 88, 257, 282, 877
HinfI GANTC 7 cut(s) 108, 132, 334, 352, 440, 989, 1162
HpaII CCGG 5 cut(s) 61, 179, 260, 558, 1390
HphI GGTGA 2 cut(s) 250, 304
Hpy166II GTNNAC 5 cut(s) 469, 705, 725, 824, 1305
Hpy188I TCNGA 9 cut(s) 37, 247, 322, 478, 579, 766, 910, 1072, 1225
Hpy8I GTNNAC 5 cut(s) 469, 705, 725, 824, 1305
Hpy99I CGWCG 2 cut(s) 41, 44
HpyAV CCTTC 2 cut(s) 1102, 1207
HpyCH4III ACNGT 5 cut(s) 292, 512, 610, 623, 635
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 5 cut(s) 690, 713, 770, 968, 1156
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 265, 1179
HpyF3I CTNAG 8 cut(s) 28, 251, 519, 818, 1069, 1322, 1431, 1439
HpySE526I ACGT 1 cut(s) 379
Hsp92II CATG 5 cut(s) 682, 711, 968, 1079, 1178
HspAI GCGC 4 cut(s) 88, 257, 282, 877
KflI GGGWCCC 1 cut(s) 1012
Ksp22I TGATCA 1 cut(s) 1315
Kzo9I GATC 9 cut(s) 343, 574, 735, 739, 895, 930, 1065, 1315, 1396
LmnI GCTCC 3 cut(s) 523, 1079, 1246
LweI GCATC 4 cut(s) 54, 424, 757, 1238
MaeI CTAG 1 cut(s) 138
MaeII ACGT 1 cut(s) 379
MaeIII GTNAC 3 cut(s) 133, 610, 1415
MalI GATC 9 cut(s) 345, 576, 737, 741, 897, 932, 1067, 1317, 1398
MboI GATC 9 cut(s) 343, 574, 735, 739, 895, 930, 1065, 1315, 1396
MboII GAAGA 9 cut(s) 93, 307, 325, 416, 449, 677, 723, 1154, 1375
MfeI CAATTG 1 cut(s) 1157
MflI RGATCY 2 cut(s) 930, 1396
MhlI GDGCHC 5 cut(s) 163, 528, 1029, 1084, 1359
MluCI AATT 8 cut(s) 328, 423, 547, 810, 846, 1001, 1051, 1157
MlyI GAGTC 4 cut(s) 102, 141, 346, 1156
MmeI TCCRAC 2 cut(s) 60, 343
MroXI GAANNNNTTC 1 cut(s) 119
MseI TTAA 7 cut(s) 456, 546, 594, 651, 891, 920, 1404
MspI CCGG 5 cut(s) 61, 179, 260, 558, 1390
MspR9I CCNGG 2 cut(s) 179, 1390
MunI CAATTG 1 cut(s) 1157
MvnI CGCG 2 cut(s) 284, 435
MwoI GCNNNNNNNGC 3 cut(s) 15, 265, 1179
NciI CCSGG 2 cut(s) 179, 1390
NdeI CATATG 1 cut(s) 1333
NdeII GATC 9 cut(s) 343, 574, 735, 739, 895, 930, 1065, 1315, 1396
NlaIII CATG 5 cut(s) 682, 711, 968, 1079, 1178
NlaIV GGNNCC 3 cut(s) 537, 1013, 1014
NmeAIII GCCGAG 4 cut(s) 36, 78, 252, 294
NmuCI GTSAC 2 cut(s) 133, 1415
NruI TCGCGA 1 cut(s) 435
NspI RCATGY 1 cut(s) 711
NspV TTCGAA 2 cut(s) 79, 778
PaeR7I CTCGAG 1 cut(s) 301
PciI ACATGT 1 cut(s) 707
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 119
PfeI GAWTC 3 cut(s) 334, 440, 989
PkrI GCNGC 1 cut(s) 835
Ple19I CGATCG 1 cut(s) 738
PleI GAGTC 4 cut(s) 102, 140, 346, 1156
PpsI GAGTC 4 cut(s) 102, 140, 346, 1156
PpuMI RGGWCCY 1 cut(s) 1012
PscI ACATGT 1 cut(s) 707
Psp124BI GAGCTC 1 cut(s) 1084
Psp1406I AACGTT 1 cut(s) 379
Psp5II RGGWCCY 1 cut(s) 1012
PspN4I GGNNCC 3 cut(s) 537, 1013, 1014
PspPI GGNCC 4 cut(s) 181, 535, 910, 1012
PspPPI RGGWCCY 1 cut(s) 1012
PspXI VCTCGAGB 1 cut(s) 301
PstNI CAGNNNCTG 1 cut(s) 156
PsuI RGATCY 2 cut(s) 930, 1396
PvuI CGATCG 1 cut(s) 738
RruI TCGCGA 1 cut(s) 435
RsaI GTAC 4 cut(s) 155, 677, 823, 1387
RsaNI GTAC 4 cut(s) 154, 676, 822, 1386
SacI GAGCTC 1 cut(s) 1084
SaqAI TTAA 7 cut(s) 456, 546, 594, 651, 891, 920, 1404
SatI GCNGC 1 cut(s) 834
Sau3AI GATC 9 cut(s) 343, 574, 735, 739, 895, 930, 1065, 1315, 1396
Sau96I GGNCC 4 cut(s) 181, 535, 910, 1012
SchI GAGTC 4 cut(s) 102, 141, 346, 1156
ScrFI CCNGG 2 cut(s) 179, 1390
SduI GDGCHC 5 cut(s) 163, 528, 1029, 1084, 1359
SfaNI GCATC 4 cut(s) 54, 424, 757, 1238
SfcI CTRYAG 1 cut(s) 631
Sfr274I CTCGAG 1 cut(s) 301
SfuI TTCGAA 2 cut(s) 79, 778
SinI GGWCC 2 cut(s) 910, 1012
SlaI CTCGAG 1 cut(s) 301
SmlI CTYRAG 4 cut(s) 110, 301, 410, 1358
SmoI CTYRAG 4 cut(s) 110, 301, 410, 1358
Sse9I AATT 8 cut(s) 328, 423, 547, 810, 846, 1001, 1051, 1157
SsiI CCGC 5 cut(s) 47, 284, 833, 1171, 1345
SspMI CTAG 1 cut(s) 138
SstI GAGCTC 1 cut(s) 1084
StyD4I CCNGG 2 cut(s) 177, 1388
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 5 cut(s) 292, 512, 610, 623, 635
TaiI ACGT 1 cut(s) 382
TaqI TCGA 9 cut(s) 73, 79, 209, 302, 342, 734, 738, 778, 1029
TasI AATT 8 cut(s) 328, 423, 547, 810, 846, 1001, 1051, 1157
TatI WGTACW 1 cut(s) 821
TauI GCSGC 1 cut(s) 836
TfiI GAWTC 3 cut(s) 334, 440, 989
Tru1I TTAA 7 cut(s) 456, 546, 594, 651, 891, 920, 1404
Tru9I TTAA 7 cut(s) 456, 546, 594, 651, 891, 920, 1404
TscAI CASTG 2 cut(s) 259, 640
TseFI GTSAC 2 cut(s) 133, 1415
Tsp45I GTSAC 2 cut(s) 133, 1415
TspDTI ATGAA 6 cut(s) 540, 618, 632, 678, 822, 1116
TspGWI ACGGA 3 cut(s) 480, 939, 1221
TspRI CASTG 2 cut(s) 259, 640
VpaK11BI GGWCC 2 cut(s) 910, 1012
XapI RAATTY 3 cut(s) 328, 423, 1051
XceI RCATGY 1 cut(s) 711
XcmI CCANNNNNNNNNTGG 1 cut(s) 1338
XhoI CTCGAG 1 cut(s) 301
XmiI GTMKAC 1 cut(s) 468
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.