pycom02g25290

Protein of unknown function (DUF616)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
23302257 .. 23305445
3189 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g25290.2

Sequence Viewer

Length: 1392 bp
ATGTTTAACAACAACAGCATATCAATCTCAGTCTCCGACGACGAAGCGAACGAGCTCGGCCGGATGAGAGTCCGAGTTCGAAGAAAGCGCAAGCAACTCGGCCAACGACTCAAGCACCGAATCGCTAGAAAGCTCGTCAGGTACTGGGCGCTTCTCATTGTTCTTCCGGCCCTCGGGTTGTTTCTGTTCGAGGCTTCCAGGATCGGCAAGAAGCCGAGTTTGGTTGAGTCGGAACGCAATACGGTGAAGAACCCGAGTTTGGAGAAGAACTCGGATGCGAATTTGAATCGGCTTGATCGTACGACTCGGGTTGTTGGAGGCGTTAGACAACGTTGTTTGGACATTCTATCTCCTGAAGAACTTGAGCAACTCGAAATTCCTGTGCGTGAAGAGTCCGATAGTCCTGTTAAGAACGTATTATACAGATCAGAGAATGACACTTCGTTTTTAGGAGGGAACAACAGTCTTTCTCAAGAGCAACCAGAGGCCACAAGATTTAATTCATTTACTGGAACTCAAACACTAGATCAGAGGGAGAAATCGTTTAAGGTAAATGAAACTGTTACTATGAACTGTGGTTTCTACAGTGAAAATGGAGGGTTTAAAATCTCAAATGCAGACATGGAGTACATGAATAGTTGCAAGGTTGTAGTGTCCACATGTGCATTTGGTGGTGGAGATGATCTTTATCAGCCTATTGGAATGTCAGAGGCTTCACTTCGAAAGGTTTGCTATGTTGCTTTTTGGGATGATATTACTCTAAGTACACAGGAAGCGGCTGAACGTAGAATTGATGGGGATGGATTTGTTGGGAAATGGCGTGTTGTGGTTGTTAAAGATCTTCCCTTTACGGACCAAAGGTTAAATGGAAAGATCCCAAAGATGTTGCCCCATCGTCTTTTTCCTCATGCAAAGTATTCCATTTGGGTAGACTCAAAGTCCCAATTTAGGAGGGACCCTTTAGGTGTGCTCGAAGCCCTGCTTTGGCGTTCAAATTCTGTACTTGCGATCTCAGAACATGGAGCACGGAGTAGCGTTTATGATGAGGCGAAGGCTGTTGTAAAAAAAAACAAGGCCAAACCAGAAGAAGTTGAGGTGCAGTTGACTCAATACCGACATGATGGCTTGCCAGAAGACAAGAGGTTCAACGGAAAGAAGGCTTTATCTGAAGCATCTGTTATTGTGAGGGAGCATACACTCCTGACTAATATGTTTACGTGCCTCTGGTTCAACGAGGTGGTTCGATTCACTTCTCGTGACCAGCTTAGTTTCCCATATGTATTATGGCGGCTGAAAGTGCTCAAGAACATCAACGTGTTCCCTGTATGTACCCGGAAAGATCTTGTTAATAGCATGGGTCACATACGCAAGGCCAAGCCACTGAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

464

Amino Acids

52.91

Weight (kDa)

9.51

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 930
AciI CCGC 2 cut(s) 776, 1288
AclI AACGTT 1 cut(s) 331
AclWI GGATC 2 cut(s) 209, 868
AcoI YGGCCR 2 cut(s) 58, 100
AcsI RAATTY 3 cut(s) 280, 375, 994
AcuI CTGAAG 2 cut(s) 375, 1188
AfaI GTAC 6 cut(s) 143, 301, 629, 766, 1002, 1330
AfiI CCNNNNNNNGG 4 cut(s) 173, 259, 948, 984
AflIII ACRYGT 2 cut(s) 659, 1314
AgsI TTSAA 4 cut(s) 286, 993, 1147, 1231
AhdI GACNNNNNGTC 1 cut(s) 937
AjnI CCWGG 1 cut(s) 197
AjuI GAANNNNNNNTTGG 4 cut(s) 203, 235, 242, 274
AluBI AGCT 3 cut(s) 55, 133, 1264
AluI AGCT 3 cut(s) 55, 133, 1264
Alw21I GWGCWC 4 cut(s) 57, 972, 1027, 1302
Alw26I GTCTC 1 cut(s) 37
AlwI GGATC 2 cut(s) 209, 868
AlwNI CAGNNNCTG 1 cut(s) 144
Ama87I CYCGRG 3 cut(s) 173, 253, 306
AoxI GGCC 6 cut(s) 58, 100, 168, 486, 1074, 1371
ApoI RAATTY 3 cut(s) 280, 375, 994
AspLEI GCGC 2 cut(s) 90, 151
AspS9I GGNCC 3 cut(s) 169, 853, 955
AsuC2I CCSGG 1 cut(s) 1333
AsuHPI GGTGA 1 cut(s) 256
AsuII TTCGAA 2 cut(s) 79, 721
AvaI CYCGRG 3 cut(s) 173, 253, 306
AvaII GGWCC 2 cut(s) 853, 955
BanII GRGCYC 1 cut(s) 57
BauI CACGAG 1 cut(s) 1254
BbsI GAAGAC 1 cut(s) 1140
Bbv12I GWGCWC 4 cut(s) 57, 972, 1027, 1302
BccI CCATC 4 cut(s) 788, 794, 900, 1115
BcgI CGANNNNNNTGC 4 cut(s) 79, 113, 711, 745
BciT130I CCWGG 1 cut(s) 199
BcnI CCSGG 1 cut(s) 1333
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 2 cut(s) 126, 524
BfmI CTRYAG 1 cut(s) 583
BfoI RGCGCY 1 cut(s) 152
BglII AGATCT 2 cut(s) 838, 1339
BisI GCNGC 2 cut(s) 777, 1289
BlsI GCNGC 2 cut(s) 778, 1290
Bme1390I CCNGG 2 cut(s) 199, 1333
Bme18I GGWCC 2 cut(s) 853, 955
BmeRI GACNNNNNGTC 1 cut(s) 937
BmeT110I CYCGRG 3 cut(s) 173, 253, 306
BmgT120I GGNCC 3 cut(s) 169, 853, 955
BmiI GGNNCC 2 cut(s) 956, 957
BmrFI CCNGG 2 cut(s) 199, 1333
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 2 cut(s) 265, 1181
BmuI ACTGGG 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 1140
BplI GAGNNNNNCTC 2 cut(s) 254, 286
Bpu14I TTCGAA 2 cut(s) 79, 721
BpuEI CTTGAG 4 cut(s) 95, 383, 456, 1286
BpuMI CCSGG 1 cut(s) 1333
BsaAI YACGTR 1 cut(s) 1218
BsaBI GATNNNNATC 1 cut(s) 687
BsaJI CCNNGG 1 cut(s) 172
BsaXI ACNNNNNCTCC 2 cut(s) 527, 557
Bsc4I CCNNNNNNNGG 4 cut(s) 173, 259, 948, 984
Bse1I ACTGG 2 cut(s) 149, 514
Bse8I GATNNNNATC 1 cut(s) 687
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 1 cut(s) 172
BseGI GGATG 4 cut(s) 69, 280, 754, 805
BseJI GATNNNNATC 1 cut(s) 687
BseLI CCNNNNNNNGG 4 cut(s) 173, 259, 948, 984
BseMII CTCAG 3 cut(s) 42, 1026, 1373
BseNI ACTGG 2 cut(s) 149, 514
BseX3I CGGCCG 1 cut(s) 58
BsgI GTGCAG 1 cut(s) 1118
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 6 cut(s) 60, 102, 170, 488, 1076, 1373
BsiEI CGRYCG 1 cut(s) 61
BsiHKAI GWGCWC 4 cut(s) 57, 972, 1027, 1302
BsiHKCI CYCGRG 3 cut(s) 173, 253, 306
BsiSI CCGG 3 cut(s) 61, 167, 1333
BsiWI CGTACG 1 cut(s) 299
BslFI GGGAC 2 cut(s) 925, 968
BslI CCNNNNNNNGG 4 cut(s) 173, 259, 948, 984
BsmAI GTCTC 1 cut(s) 37
BsmFI GGGAC 2 cut(s) 925, 968
BsnI GGCC 6 cut(s) 60, 102, 170, 488, 1076, 1373
BsoBI CYCGRG 3 cut(s) 173, 253, 306
Bsp119I TTCGAA 2 cut(s) 79, 721
Bsp1286I GDGCHC 4 cut(s) 57, 972, 1027, 1302
Bsp143I GATC 9 cut(s) 201, 295, 425, 526, 682, 838, 873, 1008, 1339
BspACI CCGC 2 cut(s) 776, 1288
BspANI GGCC 6 cut(s) 60, 102, 170, 488, 1076, 1373
BspCNI CTCAG 3 cut(s) 41, 1025, 1374
BspLI GGNNCC 2 cut(s) 956, 957
BspPI GGATC 2 cut(s) 209, 868
BspT104I TTCGAA 2 cut(s) 79, 721
BsrI ACTGG 2 cut(s) 149, 514
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 9 cut(s) 201, 295, 425, 526, 682, 838, 873, 1008, 1339
BssSI CACGAG 1 cut(s) 1254
Bst2BI CACGAG 1 cut(s) 1254
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 5 cut(s) 244, 464, 562, 575, 587
Bst6I CTCTTC 1 cut(s) 384
BstBAI YACGTR 1 cut(s) 1218
BstBI TTCGAA 2 cut(s) 79, 721
BstC8I GCNNGC 2 cut(s) 92, 1127
BstDEI CTNAG 5 cut(s) 28, 761, 1012, 1265, 1382
BstF5I GGATG 4 cut(s) 69, 280, 754, 805
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 2 cut(s) 90, 151
BstKTI GATC 9 cut(s) 204, 298, 428, 529, 685, 841, 876, 1011, 1342
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 9 cut(s) 201, 295, 425, 526, 682, 838, 873, 1008, 1339
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 1 cut(s) 1297
BstNI CCWGG 1 cut(s) 199
BstNSI RCATGY 1 cut(s) 663
BstSCI CCNGG 2 cut(s) 197, 1331
BstSFI CTRYAG 1 cut(s) 583
BstV2I GAAGAC 1 cut(s) 1140
BstX2I RGATCY 3 cut(s) 838, 873, 1339
BstYI RGATCY 3 cut(s) 838, 873, 1339
BstZI CGGCCG 1 cut(s) 58
BsuRI GGCC 6 cut(s) 60, 102, 170, 488, 1076, 1373
BtsCI GGATG 4 cut(s) 69, 280, 754, 805
BtsIMutI CAGTG 2 cut(s) 592, 1379
Cac8I GCNNGC 2 cut(s) 92, 1127
CaiI CAGNNNCTG 1 cut(s) 144
CfoI GCGC 2 cut(s) 90, 151
Cfr13I GGNCC 3 cut(s) 169, 853, 955
Csp6I GTAC 6 cut(s) 142, 300, 628, 765, 1001, 1329
CviAII CATG 7 cut(s) 622, 631, 660, 908, 1019, 1118, 1354
CviQI GTAC 6 cut(s) 142, 300, 628, 765, 1001, 1329
DdeI CTNAG 5 cut(s) 28, 761, 1012, 1265, 1382
DpnI GATC 9 cut(s) 203, 297, 427, 528, 684, 840, 875, 1010, 1341
DpnII GATC 9 cut(s) 201, 295, 425, 526, 682, 838, 873, 1008, 1339
DraI TTTAAA 1 cut(s) 604
DriI GACNNNNNGTC 1 cut(s) 937
EaeI YGGCCR 2 cut(s) 58, 100
EagI CGGCCG 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 384
Eam1105I GACNNNNNGTC 1 cut(s) 937
EarI CTCTTC 1 cut(s) 384
Ecl136II GAGCTC 1 cut(s) 55
EclXI CGGCCG 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 57
Eco47I GGWCC 2 cut(s) 853, 955
Eco52I CGGCCG 1 cut(s) 58
Eco53kI GAGCTC 1 cut(s) 55
Eco57I CTGAAG 2 cut(s) 375, 1188
Eco88I CYCGRG 3 cut(s) 173, 253, 306
EcoICRI GAGCTC 1 cut(s) 55
EcoO109I RGGNCCY 1 cut(s) 955
EcoRII CCWGG 1 cut(s) 197
EcoT38I GRGCYC 1 cut(s) 57
FaeI CATG 7 cut(s) 625, 634, 663, 911, 1022, 1121, 1357
FalI AAGNNNNNCTT 2 cut(s) 966, 998
FaqI GGGAC 2 cut(s) 925, 968
FatI CATG 7 cut(s) 621, 630, 659, 907, 1018, 1117, 1353
FauNDI CATATG 1 cut(s) 1276
FblI GTMKAC 1 cut(s) 930
Fnu4HI GCNGC 2 cut(s) 777, 1289
FokI GGATG 4 cut(s) 76, 287, 761, 812
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 2 cut(s) 777, 1289
FspBI CTAG 2 cut(s) 126, 524
GlaI GCGC 2 cut(s) 89, 150
GluI GCNGC 2 cut(s) 777, 1289
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 6 cut(s) 60, 102, 170, 488, 1076, 1373
HapII CCGG 3 cut(s) 61, 167, 1333
HhaI GCGC 2 cut(s) 90, 151
Hin1II CATG 7 cut(s) 625, 634, 663, 911, 1022, 1121, 1357
Hin6I GCGC 2 cut(s) 88, 149
HinP1I GCGC 2 cut(s) 88, 149
HincII GTYRAC 1 cut(s) 1104
HindII GTYRAC 1 cut(s) 1104
HpaII CCGG 3 cut(s) 61, 167, 1333
HphI GGTGA 1 cut(s) 256
Hpy166II GTNNAC 5 cut(s) 657, 767, 931, 1104, 1215
Hpy188III TCNNGA 5 cut(s) 353, 473, 1201, 1256, 1303
Hpy8I GTNNAC 5 cut(s) 657, 767, 931, 1104, 1215
Hpy99I CGWCG 2 cut(s) 41, 44
HpyAV CCTTC 2 cut(s) 1045, 1150
HpyCH4III ACNGT 5 cut(s) 244, 464, 562, 575, 587
HpyCH4IV ACGT 5 cut(s) 331, 414, 784, 1217, 1314
HpyCH4V TGCA 5 cut(s) 617, 642, 665, 911, 1099
HpyF10VI GCNNNNNNNGC 1 cut(s) 1297
HpyF3I CTNAG 5 cut(s) 28, 761, 1012, 1265, 1382
HpySE526I ACGT 5 cut(s) 331, 414, 784, 1217, 1314
Hsp92II CATG 7 cut(s) 625, 634, 663, 911, 1022, 1121, 1357
HspAI GCGC 2 cut(s) 88, 149
KflI GGGWCCC 1 cut(s) 955
Kzo9I GATC 9 cut(s) 201, 295, 425, 526, 682, 838, 873, 1008, 1339
LmnI GCTCC 2 cut(s) 1022, 1189
LweI GCATC 2 cut(s) 265, 1181
MaeI CTAG 2 cut(s) 126, 524
MaeII ACGT 5 cut(s) 331, 414, 784, 1217, 1314
MaeIII GTNAC 3 cut(s) 562, 1256, 1358
MalI GATC 9 cut(s) 203, 297, 427, 528, 684, 840, 875, 1010, 1341
MboI GATC 9 cut(s) 201, 295, 425, 526, 682, 838, 873, 1008, 1339
MboII GAAGA 9 cut(s) 93, 155, 259, 277, 368, 401, 833, 1097, 1145
MflI RGATCY 3 cut(s) 838, 873, 1339
MhlI GDGCHC 4 cut(s) 57, 972, 1027, 1302
MluCI AATT 6 cut(s) 280, 375, 499, 789, 944, 994
MlyI GAGTC 7 cut(s) 78, 102, 236, 298, 401, 926, 1099
MmeI TCCRAC 3 cut(s) 60, 210, 295
MseI TTAA 8 cut(s) 6, 408, 498, 546, 603, 834, 863, 1347
MslI CAYNNNNRTG 1 cut(s) 1313
MspI CCGG 3 cut(s) 61, 167, 1333
MspR9I CCNGG 2 cut(s) 199, 1333
MvaI CCWGG 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 1297
NciI CCSGG 1 cut(s) 1333
NdeI CATATG 1 cut(s) 1276
NdeII GATC 9 cut(s) 201, 295, 425, 526, 682, 838, 873, 1008, 1339
NlaIII CATG 7 cut(s) 625, 634, 663, 911, 1022, 1121, 1357
NlaIV GGNNCC 2 cut(s) 956, 957
NmeAIII GCCGAG 3 cut(s) 36, 78, 240
NmuCI GTSAC 2 cut(s) 1256, 1358
NspI RCATGY 1 cut(s) 663
NspV TTCGAA 2 cut(s) 79, 721
PciI ACATGT 1 cut(s) 659
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 295
PfeI GAWTC 3 cut(s) 120, 286, 1245
Pfl23II CGTACG 1 cut(s) 299
PfoI TCCNGGA 1 cut(s) 197
PkrI GCNGC 2 cut(s) 778, 1290
PleI GAGTC 7 cut(s) 77, 102, 235, 298, 400, 926, 1099
PpsI GAGTC 7 cut(s) 77, 102, 235, 298, 400, 926, 1099
Ppu21I YACGTR 1 cut(s) 1218
PpuMI RGGWCCY 1 cut(s) 955
PscI ACATGT 1 cut(s) 659
Psp124BI GAGCTC 1 cut(s) 57
Psp1406I AACGTT 1 cut(s) 331
Psp5II RGGWCCY 1 cut(s) 955
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspLI CGTACG 1 cut(s) 299
PspN4I GGNNCC 2 cut(s) 956, 957
PspPI GGNCC 3 cut(s) 169, 853, 955
PspPPI RGGWCCY 1 cut(s) 955
PsrI GAACNNNNNNTAC 2 cut(s) 404, 436
PstNI CAGNNNCTG 1 cut(s) 144
PsuI RGATCY 3 cut(s) 838, 873, 1339
RsaI GTAC 6 cut(s) 143, 301, 629, 766, 1002, 1330
RsaNI GTAC 6 cut(s) 142, 300, 628, 765, 1001, 1329
RseI CAYNNNNRTG 1 cut(s) 1313
SacI GAGCTC 1 cut(s) 57
SaqAI TTAA 8 cut(s) 6, 408, 498, 546, 603, 834, 863, 1347
SatI GCNGC 2 cut(s) 777, 1289
Sau3AI GATC 9 cut(s) 201, 295, 425, 526, 682, 838, 873, 1008, 1339
Sau96I GGNCC 3 cut(s) 169, 853, 955
SchI GAGTC 7 cut(s) 78, 102, 236, 298, 401, 926, 1099
ScrFI CCNGG 2 cut(s) 199, 1333
SduI GDGCHC 4 cut(s) 57, 972, 1027, 1302
SfaNI GCATC 2 cut(s) 265, 1181
SfcI CTRYAG 1 cut(s) 583
SfuI TTCGAA 2 cut(s) 79, 721
SinI GGWCC 2 cut(s) 853, 955
SmiMI CAYNNNNRTG 1 cut(s) 1313
SmlI CTYRAG 4 cut(s) 110, 362, 471, 1301
SmoI CTYRAG 4 cut(s) 110, 362, 471, 1301
Sse9I AATT 6 cut(s) 280, 375, 499, 789, 944, 994
SsiI CCGC 2 cut(s) 776, 1288
SspMI CTAG 2 cut(s) 126, 524
SstI GAGCTC 1 cut(s) 57
StyD4I CCNGG 2 cut(s) 197, 1331
TaaI ACNGT 5 cut(s) 244, 464, 562, 575, 587
TaiI ACGT 5 cut(s) 334, 417, 787, 1220, 1317
TaqI TCGA 6 cut(s) 79, 189, 372, 721, 972, 1243
TasI AATT 6 cut(s) 280, 375, 499, 789, 944, 994
TatI WGTACW 3 cut(s) 627, 764, 1000
TauI GCSGC 2 cut(s) 779, 1291
TfiI GAWTC 3 cut(s) 120, 286, 1245
Tru1I TTAA 8 cut(s) 6, 408, 498, 546, 603, 834, 863, 1347
Tru9I TTAA 8 cut(s) 6, 408, 498, 546, 603, 834, 863, 1347
TscAI CASTG 2 cut(s) 592, 1386
TseFI GTSAC 2 cut(s) 1256, 1358
Tsp45I GTSAC 2 cut(s) 1256, 1358
TspDTI ATGAA 4 cut(s) 492, 570, 584, 647
TspGWI ACGGA 3 cut(s) 866, 1042, 1164
TspRI CASTG 2 cut(s) 592, 1386
VpaK11BI GGWCC 2 cut(s) 853, 955
XapI RAATTY 3 cut(s) 280, 375, 994
XceI RCATGY 1 cut(s) 663
XcmI CCANNNNNNNNNTGG 2 cut(s) 863, 1281
XmiI GTMKAC 1 cut(s) 930
XspI CTAG 2 cut(s) 126, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.