Rh1BG027900

Protein of unknown function (DUF616)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002998
Physical Location & Seq
Reverse (-)
3871716 .. 3875011
3296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG027900.1

Sequence Viewer

Length: 1056 bp
ATGTTCAACAGCAACAGCGTATCAATCTCAGTCTCCGATGACGAATCCGACGAGCTGGGCCGGATGCGCGTCCGAGTTCGCCGGAAGCGCAAGAAACTCGGCCACCGATTCAAGAACGAGTTCGTTCGCCGAGTGGTGAGGAATCTGGTCAGGTACTGGGCCCTTCTGATTCTTCTCCCAGCCATTGGTTTGCTTCTGTACGAGGCTTGGAGTATCGGCTGGAAATCCCCACAGCTCAATAATAAGTCGGAAAAGCCGAGTTTGGTCCACTCGGAACTCAATGCGAGTTCGGAGAAGAAATCCGAAGGCAATTTGAATCGGCTTGATCCTATCACTCGGGTTATTCATGGCGTTAGGGAACGTTGCTTGCAAATCTTACCTCCTGAAGAACTTGAGCATCTGGAAATTCCTGTGCGCGAAGATGACACTAGTCCTGTTAAGAAATTGTTATACAGAGCGGAGAATGATGGTCTGTTGTTAGGAGGGTACAACACCCGGTCTGAAGAGCACACAGAGGCCACAAGATTTAATTTGTTTACGGGAAATCAAACTCTAGATCAGAGAGGTGAAATGTTTAAGGTAAATGAAACTGTTACCATAAACTGTGGTTTCTACAGTGAAAATGGTGGGTTTAAGATCTCAAATGAAGACAAGAATTACTTGCAAAGTTGTGACATTGTAGTCTCCACTTGTGCATTTGGTGGTGGAGATGATCTTTATCAACCCATTGGAATGTCAGAGGCATCCCTTCAGAAGGTTTGCTATGTTGCTTTTTGGGATGAAGTTACTGTAAGTACTCAGGAATCAGCTGAACATAGAATTGGTGAGGATGGATTTATTGGGAGATGGCGCATTGTGGTTGTAAGCGATCTGCCTTTTGCGGACCAGAGGTTAAACGGAAAAATCCCAAAGGTAACAAGTTTTTTGCCTCACTTAATTCATCACCTTTTTTTATCATTCATTTTGTATTTGATTAAGTGCTACTTGCATTGTATCTTGATCATGCTTTCCTTTGTAACCTATACTTTAGGGCAATGTGTTTATCATGATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF616 Dirigent

Protein Analysis

351

Amino Acids

40.25

Weight (kDa)

6.61

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOD1_MUCI70 PF04765 167 - 306 5.7e-46 TOD1/MUCI70, glycosyltransferase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 680
AccB7I CCANNNNNTGG 1 cut(s) 185
AccBSI CCGCTC 1 cut(s) 458
AccII CGCG 2 cut(s) 69, 417
AciI CCGC 2 cut(s) 458, 881
AclI AACGTT 1 cut(s) 361
AclWI GGATC 1 cut(s) 320
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 1 cut(s) 405
AcuI CTGAAG 3 cut(s) 405, 522, 734
AfaI GTAC 4 cut(s) 155, 200, 488, 796
AfiI CCNNNNNNNGG 2 cut(s) 185, 754
AgsI TTSAA 3 cut(s) 7, 112, 316
AhlI ACTAGT 1 cut(s) 428
AjuI GAANNNNNNNTTGG 2 cut(s) 804, 836
AluBI AGCT 3 cut(s) 55, 235, 809
AluI AGCT 3 cut(s) 55, 235, 809
Alw21I GWGCWC 1 cut(s) 510
Alw26I GTCTC 2 cut(s) 37, 688
AlwI GGATC 1 cut(s) 320
AlwNI CAGNNNCTG 1 cut(s) 156
Ama87I CYCGRG 1 cut(s) 336
AoxI GGCC 4 cut(s) 58, 100, 159, 516
ApaI GGGCCC 1 cut(s) 163
ApoI RAATTY 1 cut(s) 405
Asp700I GAANNNNTTC 1 cut(s) 119
AspLEI GCGC 4 cut(s) 69, 90, 417, 852
AspS9I GGNCC 5 cut(s) 58, 159, 160, 265, 883
AsuC2I CCSGG 1 cut(s) 496
AsuHPI GGTGA 4 cut(s) 148, 578, 836, 935
AvaI CYCGRG 1 cut(s) 336
AvaII GGWCC 2 cut(s) 265, 883
BaeGI GKGCMC 1 cut(s) 163
BanII GRGCYC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 654
Bbv12I GWGCWC 1 cut(s) 510
BccI CCATC 3 cut(s) 461, 824, 840
BcgI CGANNNNNNTGC 2 cut(s) 79, 113
BclI TGATCA 1 cut(s) 999
BcnI CCSGG 1 cut(s) 496
BcoDI GTCTC 2 cut(s) 37, 688
BcuI ACTAGT 1 cut(s) 428
BfaI CTAG 2 cut(s) 429, 554
BfmI CTRYAG 1 cut(s) 613
BglII AGATCT 1 cut(s) 636
BmcAI AGTACT 1 cut(s) 796
Bme1390I CCNGG 1 cut(s) 496
Bme18I GGWCC 2 cut(s) 265, 883
BmeT110I CYCGRG 1 cut(s) 336
BmgT120I GGNCC 5 cut(s) 58, 159, 160, 265, 883
BmiI GGNNCC 1 cut(s) 161
BmrFI CCNGG 1 cut(s) 496
BmrI ACTGGG 1 cut(s) 166
BmsI GCATC 3 cut(s) 54, 406, 752
BmuI ACTGGG 1 cut(s) 166
BoxI GACNNNNGTC 1 cut(s) 429
BpiI GAAGAC 1 cut(s) 654
BpuEI CTTGAG 1 cut(s) 413
BpuMI CCSGG 1 cut(s) 496
BsaBI GATNNNNATC 1 cut(s) 717
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 754
Bse1I ACTGG 1 cut(s) 161
Bse3DI GCAATG 1 cut(s) 1040
Bse8I GATNNNNATC 1 cut(s) 717
BseGI GGATG 4 cut(s) 69, 743, 784, 835
BseJI GATNNNNATC 1 cut(s) 717
BseLI CCNNNNNNNGG 2 cut(s) 185, 754
BseMI GCAATG 1 cut(s) 1040
BseMII CTCAG 2 cut(s) 42, 812
BseNI ACTGG 1 cut(s) 161
BseSI GKGCMC 1 cut(s) 163
BseYI CCCAGC 2 cut(s) 55, 178
Bsh1236I CGCG 2 cut(s) 69, 417
BshFI GGCC 4 cut(s) 60, 102, 161, 518
BsiHKAI GWGCWC 1 cut(s) 510
BsiHKCI CYCGRG 1 cut(s) 336
BsiSI CCGG 3 cut(s) 61, 82, 496
BslI CCNNNNNNNGG 2 cut(s) 185, 754
BsmAI GTCTC 2 cut(s) 37, 688
BsnI GGCC 4 cut(s) 60, 102, 161, 518
BsoBI CYCGRG 1 cut(s) 336
Bsp120I GGGCCC 1 cut(s) 159
Bsp1286I GDGCHC 2 cut(s) 163, 510
Bsp143I GATC 6 cut(s) 325, 556, 636, 712, 868, 999
BspACI CCGC 2 cut(s) 458, 881
BspANI GGCC 4 cut(s) 60, 102, 161, 518
BspCNI CTCAG 2 cut(s) 41, 811
BspFNI CGCG 2 cut(s) 69, 417
BspHI TCATGA 1 cut(s) 1045
BspLI GGNNCC 1 cut(s) 161
BspPI GGATC 1 cut(s) 320
BspQI GCTCTTC 1 cut(s) 498
BsrBI CCGCTC 1 cut(s) 458
BsrDI GCAATG 1 cut(s) 1040
BsrI ACTGG 1 cut(s) 161
BssMI GATC 6 cut(s) 325, 556, 636, 712, 868, 999
Bst4CI ACNGT 4 cut(s) 592, 605, 617, 790
Bst6I CTCTTC 1 cut(s) 498
BstC8I GCNNGC 1 cut(s) 368
BstDEI CTNAG 2 cut(s) 28, 798
BstENI CCTNNNNNAGG 1 cut(s) 752
BstF5I GGATG 4 cut(s) 69, 743, 784, 835
BstFNI CGCG 2 cut(s) 69, 417
BstHHI GCGC 4 cut(s) 69, 90, 417, 852
BstKTI GATC 6 cut(s) 328, 559, 639, 715, 871, 1002
BstMAI GTCTC 2 cut(s) 37, 688
BstMBI GATC 6 cut(s) 325, 556, 636, 712, 868, 999
BstMWI GCNNNNNNNGC 2 cut(s) 66, 87
BstPAI GACNNNNGTC 1 cut(s) 429
BstSCI CCNGG 1 cut(s) 494
BstSFI CTRYAG 1 cut(s) 613
BstSLI GKGCMC 1 cut(s) 163
BstUI CGCG 2 cut(s) 69, 417
BstV2I GAAGAC 1 cut(s) 654
BstX2I RGATCY 1 cut(s) 636
BstYI RGATCY 1 cut(s) 636
BsuRI GGCC 4 cut(s) 60, 102, 161, 518
BtsCI GGATG 4 cut(s) 69, 743, 784, 835
BtsIMutI CAGTG 1 cut(s) 622
Cac8I GCNNGC 1 cut(s) 368
CaiI CAGNNNCTG 1 cut(s) 156
CciI TCATGA 1 cut(s) 1045
CfoI GCGC 4 cut(s) 69, 90, 417, 852
Cfr13I GGNCC 5 cut(s) 58, 159, 160, 265, 883
CseI GACGC 1 cut(s) 58
Csp6I GTAC 4 cut(s) 154, 199, 487, 795
CviAII CATG 3 cut(s) 347, 1003, 1046
CviQI GTAC 4 cut(s) 154, 199, 487, 795
DdeI CTNAG 2 cut(s) 28, 798
DpnI GATC 6 cut(s) 327, 558, 638, 714, 870, 1001
DpnII GATC 6 cut(s) 325, 556, 636, 712, 868, 999
DrdI GACNNNNNNGTC 1 cut(s) 680
DseDI GACNNNNNNGTC 1 cut(s) 680
EaeI YGGCCR 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 498
EarI CTCTTC 1 cut(s) 498
Eco24I GRGCYC 1 cut(s) 163
Eco47I GGWCC 2 cut(s) 265, 883
Eco57I CTGAAG 3 cut(s) 405, 522, 734
Eco88I CYCGRG 1 cut(s) 336
EcoNI CCTNNNNNAGG 1 cut(s) 752
EcoO109I RGGNCCY 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 163
FaeI CATG 3 cut(s) 350, 1006, 1049
FaiI YATR 8 cut(s) 348, 451, 599, 765, 816, 1004, 1023, 1047
FalI AAGNNNNNCTT 4 cut(s) 644, 676, 968, 1000
FatI CATG 3 cut(s) 346, 1002, 1045
FbaI TGATCA 1 cut(s) 999
FokI GGATG 4 cut(s) 76, 730, 791, 842
FriOI GRGCYC 1 cut(s) 163
FspBI CTAG 2 cut(s) 429, 554
GlaI GCGC 4 cut(s) 68, 89, 416, 851
GsaI CCCAGC 2 cut(s) 59, 182
HaeIII GGCC 4 cut(s) 60, 102, 161, 518
HapII CCGG 3 cut(s) 61, 82, 496
HgaI GACGC 1 cut(s) 58
HhaI GCGC 4 cut(s) 69, 90, 417, 852
Hin1II CATG 3 cut(s) 350, 1006, 1049
Hin6I GCGC 4 cut(s) 67, 88, 415, 850
HinP1I GCGC 4 cut(s) 67, 88, 415, 850
HinfI GANTC 6 cut(s) 44, 108, 142, 169, 316, 803
HpaII CCGG 3 cut(s) 61, 82, 496
HphI GGTGA 4 cut(s) 148, 578, 836, 935
Hpy166II GTNNAC 2 cut(s) 268, 537
Hpy188III TCNNGA 7 cut(s) 112, 383, 401, 554, 800, 997, 1046
Hpy8I GTNNAC 2 cut(s) 268, 537
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 4 cut(s) 173, 299, 748, 758
HpyCH4III ACNGT 4 cut(s) 592, 605, 617, 790
HpyCH4IV ACGT 1 cut(s) 361
HpyCH4V TGCA 4 cut(s) 370, 664, 695, 988
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 87
HpyF3I CTNAG 2 cut(s) 28, 798
HpySE526I ACGT 1 cut(s) 361
Hsp92II CATG 3 cut(s) 350, 1006, 1049
HspAI GCGC 4 cut(s) 67, 88, 415, 850
Ksp22I TGATCA 1 cut(s) 999
Kzo9I GATC 6 cut(s) 325, 556, 636, 712, 868, 999
LguI GCTCTTC 1 cut(s) 498
LweI GCATC 3 cut(s) 54, 406, 752
MaeI CTAG 2 cut(s) 429, 554
MaeII ACGT 1 cut(s) 361
MaeIII GTNAC 5 cut(s) 592, 671, 784, 913, 1015
MalI GATC 6 cut(s) 327, 558, 638, 714, 870, 1001
MbiI CCGCTC 1 cut(s) 458
MboI GATC 6 cut(s) 325, 556, 636, 712, 868, 999
MboII GAAGA 6 cut(s) 164, 307, 398, 431, 515, 659
MflI RGATCY 1 cut(s) 636
MhlI GDGCHC 2 cut(s) 163, 510
MluCI AATT 7 cut(s) 310, 405, 443, 529, 655, 819, 936
MmeI TCCRAC 2 cut(s) 72, 228
MroXI GAANNNNTTC 1 cut(s) 119
MseI TTAA 7 cut(s) 438, 528, 576, 633, 893, 935, 975
MslI CAYNNNNRTG 1 cut(s) 731
MspA1I CMGCKG 1 cut(s) 809
MspI CCGG 3 cut(s) 61, 82, 496
MspR9I CCNGG 1 cut(s) 496
MvnI CGCG 2 cut(s) 69, 417
MwoI GCNNNNNNNGC 2 cut(s) 66, 87
NciI CCSGG 1 cut(s) 496
NdeII GATC 6 cut(s) 325, 556, 636, 712, 868, 999
NlaIII CATG 3 cut(s) 350, 1006, 1049
NlaIV GGNNCC 1 cut(s) 161
NmeAIII GCCGAG 3 cut(s) 78, 155, 282
NmuCI GTSAC 1 cut(s) 671
PagI TCATGA 1 cut(s) 1045
PciSI GCTCTTC 1 cut(s) 498
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 254
PdmI GAANNNNTTC 1 cut(s) 119
PfeI GAWTC 6 cut(s) 44, 108, 142, 169, 316, 803
PflMI CCANNNNNTGG 1 cut(s) 185
PshAI GACNNNNGTC 1 cut(s) 429
Psp1406I AACGTT 1 cut(s) 361
PspFI CCCAGC 2 cut(s) 55, 178
PspN4I GGNNCC 1 cut(s) 161
PspOMI GGGCCC 1 cut(s) 159
PspPI GGNCC 5 cut(s) 58, 159, 160, 265, 883
PstNI CAGNNNCTG 1 cut(s) 156
PsuI RGATCY 1 cut(s) 636
PvuII CAGCTG 1 cut(s) 809
RsaI GTAC 4 cut(s) 155, 200, 488, 796
RsaNI GTAC 4 cut(s) 154, 199, 487, 795
RseI CAYNNNNRTG 1 cut(s) 731
SapI GCTCTTC 1 cut(s) 498
SaqAI TTAA 7 cut(s) 438, 528, 576, 633, 893, 935, 975
Sau3AI GATC 6 cut(s) 325, 556, 636, 712, 868, 999
Sau96I GGNCC 5 cut(s) 58, 159, 160, 265, 883
ScaI AGTACT 1 cut(s) 796
ScrFI CCNGG 1 cut(s) 496
SduI GDGCHC 2 cut(s) 163, 510
SfaNI GCATC 3 cut(s) 54, 406, 752
SfcI CTRYAG 1 cut(s) 613
SinI GGWCC 2 cut(s) 265, 883
SmiMI CAYNNNNRTG 1 cut(s) 731
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
SpeI ACTAGT 1 cut(s) 428
Sse9I AATT 7 cut(s) 310, 405, 443, 529, 655, 819, 936
SsiI CCGC 2 cut(s) 458, 881
SspMI CTAG 2 cut(s) 429, 554
StyD4I CCNGG 1 cut(s) 494
TaaI ACNGT 4 cut(s) 592, 605, 617, 790
TaiI ACGT 1 cut(s) 364
TasI AATT 7 cut(s) 310, 405, 443, 529, 655, 819, 936
TatI WGTACW 1 cut(s) 794
TfiI GAWTC 6 cut(s) 44, 108, 142, 169, 316, 803
Tru1I TTAA 7 cut(s) 438, 528, 576, 633, 893, 935, 975
Tru9I TTAA 7 cut(s) 438, 528, 576, 633, 893, 935, 975
TscAI CASTG 1 cut(s) 622
TseFI GTSAC 1 cut(s) 671
Tsp45I GTSAC 1 cut(s) 671
TspDTI ATGAA 6 cut(s) 335, 600, 660, 795, 929, 949
TspGWI ACGGA 1 cut(s) 912
TspRI CASTG 1 cut(s) 622
Van91I CCANNNNNTGG 1 cut(s) 185
VpaK11BI GGWCC 2 cut(s) 265, 883
XagI CCTNNNNNAGG 1 cut(s) 752
XapI RAATTY 1 cut(s) 405
XbaI TCTAGA 1 cut(s) 553
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 2 cut(s) 429, 554
ZrmI AGTACT 1 cut(s) 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.