Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000363.1

Orthogroup ID

OG0002998

Physical Location & Seq

Genomic Coordinates Forward (+)

228956 .. 230465

Gene Structure 1510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000363.1_g000055.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

atggcagtgtcggatgacgaatctgacgagctcggccggatgcgcgttcgagttcgccggaagcgcaagaaactccaccaccgattcaagaacggagtggtgaggaatctggtcagctactggcccctgttctgggcccttgtaatttttctagcggccatttgtttgcttctgtatgaggcatggactatcggctggaaatccccacaactcaataactcagaactcactgcggtgaacaatgatttgaatcggcttgatcctatcactcaggttgttcgtggcgttacgcaacgttgcttgccaatcttacctcctgaacaacttgagcatctggaaattcctgtgccccaagattccactagtcctgttaaaaaattgatatacacagctgagaatgatgctccgttgttaggacggtacaacaccctatctcaagagcacacagatgcaacaagatttaatttgtttactggaaatcaaactctagatcagagagatgaaatgtttaaggtaaatgaaactgttactataaactgtggtttctacagtgaaagtggtgggtttaagatctcaaatgaagacaagaattacatgaaaagttgtgacattgtagtctccacttgtgcatttggtagtggagatgatctttatcaacccattggaatgtcagaggcatcccttcagaaggtttgctttgttgctttttgggatgaagttactgtgagtactcaagagtcagctgaacatagaattggtgaggatggatttattgggaaatggcgcattgtggttgtaagagatctcccttttgcggaccaaaggttaaatggaaaaatcccaaagtcgcatcaatttcagaagtatgttaagcagatgacggctgacaatattccatataatatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF616 Dirigent

Protein Analysis

302

Amino Acids

34.54

Weight (kDa)

6.33

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42660
fragaria_vesca	FvH4_7g01740 FvH4_7g01740 FvH4_7g01740 FvH4_7g01740
malus_domestica	MD02G1301200.v1.1 MD07G1022800.v1.1
prunus_persica	Prupe.2G023300_v2.0.a1 Prupe.2G023300_v2.0.a1 Prupe.2G023300_v2.0.a1 Prupe.2G023300_v2.0.a1 Prupe.2G023300_v2.0.a1
pyrus_communis	pycom02g25290 pycom07g01730
rosa_chinensis	RchiOBHm_Chr1g0318301 RchiOBHm_Chr4g0418501
rosa_laevigata	RLG00000007859 RLG00000030546
rosa_multiflora	Rmu_sc0000363.1_g000055 Rmu_sc0001879.1_g000028 Rmu_ssc0000308.1_g000013
rosa_roxburghii	Rroxscaffold_4G00329380 Rroxscaffold_4G00329420 Rroxscaffold_4G00329640 Rroxscaffold_5G00361730
rosa_rugosa	Rorug01G0020100 Rorug01G0020100 Rorug04G0153900
rosa_samantha	Rh1AG032200 Rh1BG027900 Rh1CG030700 Rh1DG039000 Rh4AG214900 Rh4BG215500 Rh4CG226600 Rh4DG213500
rosa_wichuraiana	Rw0G010070 Rw1G002580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	614
AccII	CGCG	1 cut(s)	45
AciI	CCGC	3 cut(s)	155, 233, 815
AclI	AACGTT	1 cut(s)	295
AclWI	GGATC	1 cut(s)	254
AcoI	YGGCCR	2 cut(s)	34, 156
AcsI	RAATTY	1 cut(s)	339
AcuI	CTGAAG	1 cut(s)	668
AfaI	GTAC	2 cut(s)	422, 730
AfiI	CCNNNNNNNGG	5 cut(s)	132, 133, 413, 688, 814
AgsI	TTSAA	2 cut(s)	88, 250
AhlI	ACTAGT	1 cut(s)	362
AjuI	GAANNNNNNNTTGG	2 cut(s)	738, 770
AleI	CACNNNNGTG	1 cut(s)	233
AluBI	AGCT	4 cut(s)	31, 117, 392, 743
AluI	AGCT	4 cut(s)	31, 117, 392, 743
Alw21I	GWGCWC	2 cut(s)	33, 444
Alw26I	GTCTC	1 cut(s)	622
AlwI	GGATC	1 cut(s)	254
AlwNI	CAGNNNCTG	1 cut(s)	120
AoxI	GGCC	4 cut(s)	34, 122, 135, 156
ApaI	GGGCCC	1 cut(s)	139
ApoI	RAATTY	1 cut(s)	339
AspLEI	GCGC	3 cut(s)	45, 66, 786
AspS9I	GGNCC	4 cut(s)	123, 135, 136, 817
AsuHPI	GGTGA	3 cut(s)	112, 247, 770
AvaII	GGWCC	1 cut(s)	817
BaeGI	GKGCMC	2 cut(s)	139, 351
BanII	GRGCYC	2 cut(s)	33, 139
BbsI	GAAGAC	1 cut(s)	588
Bbv12I	GWGCWC	2 cut(s)	33, 444
BccI	CCATC	1 cut(s)	758
BceAI	ACGGC	1 cut(s)	897
BcoDI	GTCTC	1 cut(s)	622
BcuI	ACTAGT	1 cut(s)	362
BfaI	CTAG	3 cut(s)	152, 363, 488
BfmI	CTRYAG	1 cut(s)	547
BglII	AGATCT	2 cut(s)	570, 802
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
BmcAI	AGTACT	1 cut(s)	730
Bme18I	GGWCC	1 cut(s)	817
BmgT120I	GGNCC	4 cut(s)	123, 135, 136, 817
BmiI	GGNNCC	2 cut(s)	125, 137
BmsI	GCATC	6 cut(s)	30, 340, 391, 439, 686, 859
BpiI	GAAGAC	1 cut(s)	588
BpuEI	CTTGAG	3 cut(s)	347, 420, 717
BsaBI	GATNNNNATC	2 cut(s)	249, 651
Bsc4I	CCNNNNNNNGG	5 cut(s)	132, 133, 413, 688, 814
Bse1I	ACTGG	2 cut(s)	125, 478
Bse8I	GATNNNNATC	2 cut(s)	249, 651
BseGI	GGATG	5 cut(s)	19, 45, 677, 718, 769
BseJI	GATNNNNATC	2 cut(s)	249, 651
BseLI	CCNNNNNNNGG	5 cut(s)	132, 133, 413, 688, 814
BseMII	CTCAG	3 cut(s)	234, 284, 384
BseNI	ACTGG	2 cut(s)	125, 478
BseSI	GKGCMC	2 cut(s)	139, 351
BseX3I	CGGCCG	1 cut(s)	34
Bsh1236I	CGCG	1 cut(s)	45
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	4 cut(s)	36, 124, 137, 158
BsiEI	CGRYCG	1 cut(s)	37
BsiHKAI	GWGCWC	2 cut(s)	33, 444
BsiSI	CCGG	2 cut(s)	37, 58
BslI	CCNNNNNNNGG	5 cut(s)	132, 133, 413, 688, 814
BsmAI	GTCTC	1 cut(s)	622
BsnI	GGCC	4 cut(s)	36, 124, 137, 158
Bsp120I	GGGCCC	1 cut(s)	135
Bsp1286I	GDGCHC	4 cut(s)	33, 139, 351, 444
Bsp143I	GATC	5 cut(s)	259, 490, 570, 646, 802
BspACI	CCGC	3 cut(s)	155, 233, 815
BspANI	GGCC	4 cut(s)	36, 124, 137, 158
BspCNI	CTCAG	3 cut(s)	233, 283, 385
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	2 cut(s)	125, 137
BspPI	GGATC	1 cut(s)	254
BsrI	ACTGG	2 cut(s)	125, 478
BssMI	GATC	5 cut(s)	259, 490, 570, 646, 802
Bst4CI	ACNGT	5 cut(s)	420, 526, 539, 551, 724
BstC8I	GCNNGC	1 cut(s)	302
BstDEI	CTNAG	3 cut(s)	220, 270, 393
BstENI	CCTNNNNNAGG	1 cut(s)	686
BstF5I	GGATG	5 cut(s)	19, 45, 677, 718, 769
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	3 cut(s)	45, 66, 786
BstKTI	GATC	5 cut(s)	262, 493, 573, 649, 805
BstMAI	GTCTC	1 cut(s)	622
BstMBI	GATC	5 cut(s)	259, 490, 570, 646, 802
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 63
BstSFI	CTRYAG	1 cut(s)	547
BstSLI	GKGCMC	2 cut(s)	139, 351
BstUI	CGCG	1 cut(s)	45
BstV2I	GAAGAC	1 cut(s)	588
BstX2I	RGATCY	2 cut(s)	570, 802
BstYI	RGATCY	2 cut(s)	570, 802
BstZI	CGGCCG	1 cut(s)	34
BsuRI	GGCC	4 cut(s)	36, 124, 137, 158
BtsCI	GGATG	5 cut(s)	19, 45, 677, 718, 769
BtsI	GCAGTG	2 cut(s)	12, 228
BtsIMutI	CAGTG	3 cut(s)	12, 228, 556
Cac8I	GCNNGC	1 cut(s)	302
CaiI	CAGNNNCTG	1 cut(s)	120
CfoI	GCGC	3 cut(s)	45, 66, 786
Cfr13I	GGNCC	4 cut(s)	123, 135, 136, 817
Csp6I	GTAC	2 cut(s)	421, 729
CviAII	CATG	2 cut(s)	183, 595
CviQI	GTAC	2 cut(s)	421, 729
DdeI	CTNAG	3 cut(s)	220, 270, 393
DpnI	GATC	5 cut(s)	261, 492, 572, 648, 804
DpnII	GATC	5 cut(s)	259, 490, 570, 646, 802
DrdI	GACNNNNNNGTC	1 cut(s)	614
DseDI	GACNNNNNNGTC	1 cut(s)	614
EaeI	YGGCCR	2 cut(s)	34, 156
EagI	CGGCCG	1 cut(s)	34
Ecl136II	GAGCTC	1 cut(s)	31
EclXI	CGGCCG	1 cut(s)	34
Eco24I	GRGCYC	2 cut(s)	33, 139
Eco47I	GGWCC	1 cut(s)	817
Eco52I	CGGCCG	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	668
EcoICRI	GAGCTC	1 cut(s)	31
EcoNI	CCTNNNNNAGG	1 cut(s)	686
EcoO109I	RGGNCCY	1 cut(s)	136
EcoT38I	GRGCYC	2 cut(s)	33, 139
FaeI	CATG	2 cut(s)	186, 598
FaiI	YATR	9 cut(s)	177, 184, 385, 533, 596, 750, 867, 898, 900
FalI	AAGNNNNNCTT	2 cut(s)	680, 712
FatI	CATG	2 cut(s)	182, 594
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	5 cut(s)	26, 52, 664, 725, 776
FriOI	GRGCYC	2 cut(s)	33, 139
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	3 cut(s)	152, 363, 488
GlaI	GCGC	3 cut(s)	44, 65, 785
GluI	GCNGC	1 cut(s)	156
HaeIII	GGCC	4 cut(s)	36, 124, 137, 158
HapII	CCGG	2 cut(s)	37, 58
HhaI	GCGC	3 cut(s)	45, 66, 786
Hin1II	CATG	2 cut(s)	186, 598
Hin6I	GCGC	3 cut(s)	43, 64, 784
HinP1I	GCGC	3 cut(s)	43, 64, 784
HinfI	GANTC	6 cut(s)	20, 84, 106, 250, 356, 737
HpaII	CCGG	2 cut(s)	37, 58
HphI	GGTGA	3 cut(s)	112, 247, 770
Hpy166II	GTNNAC	2 cut(s)	238, 471
Hpy188I	TCNGA	8 cut(s)	13, 25, 223, 495, 673, 687, 861, 908
Hpy188III	TCNNGA	6 cut(s)	88, 317, 335, 437, 488, 734
Hpy8I	GTNNAC	2 cut(s)	238, 471
HpyAV	CCTTC	2 cut(s)	682, 692
HpyCH4III	ACNGT	5 cut(s)	420, 526, 539, 551, 724
HpyCH4IV	ACGT	1 cut(s)	295
HpyCH4V	TGCA	2 cut(s)	452, 629
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 63
HpyF3I	CTNAG	3 cut(s)	220, 270, 393
HpySE526I	ACGT	1 cut(s)	295
Hsp92II	CATG	2 cut(s)	186, 598
HspAI	GCGC	3 cut(s)	43, 64, 784
Kzo9I	GATC	5 cut(s)	259, 490, 570, 646, 802
LmnI	GCTCC	1 cut(s)	409
LweI	GCATC	6 cut(s)	30, 340, 391, 439, 686, 859
MaeI	CTAG	3 cut(s)	152, 363, 488
MaeII	ACGT	1 cut(s)	295
MaeIII	GTNAC	4 cut(s)	286, 526, 605, 718
MalI	GATC	5 cut(s)	261, 492, 572, 648, 804
MboI	GATC	5 cut(s)	259, 490, 570, 646, 802
MboII	GAAGA	1 cut(s)	593
MflI	RGATCY	2 cut(s)	570, 802
MhlI	GDGCHC	4 cut(s)	33, 139, 351, 444
MluCI	AATT	7 cut(s)	144, 339, 377, 463, 589, 753, 854
MlyI	GAGTC	1 cut(s)	746
MnlI	CCTC	5 cut(s)	96, 172, 324, 667, 754
MseI	TTAA	6 cut(s)	372, 462, 510, 567, 827, 870
MslI	CAYNNNNRTG	3 cut(s)	233, 447, 665
MspA1I	CMGCKG	2 cut(s)	392, 743
MspI	CCGG	2 cut(s)	37, 58
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	42, 63
NdeII	GATC	5 cut(s)	259, 490, 570, 646, 802
NlaIII	CATG	2 cut(s)	186, 598
NlaIV	GGNNCC	2 cut(s)	125, 137
NmeAIII	GCCGAG	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	605
OliI	CACNNNNGTG	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PfeI	GAWTC	5 cut(s)	20, 84, 106, 250, 356
PkrI	GCNGC	1 cut(s)	157
PleI	GAGTC	1 cut(s)	745
PpsI	GAGTC	1 cut(s)	745
Psp124BI	GAGCTC	1 cut(s)	33
Psp1406I	AACGTT	1 cut(s)	295
PspN4I	GGNNCC	2 cut(s)	125, 137
PspOMI	GGGCCC	1 cut(s)	135
PspPI	GGNCC	4 cut(s)	123, 135, 136, 817
PstNI	CAGNNNCTG	1 cut(s)	120
PsuI	RGATCY	2 cut(s)	570, 802
PvuII	CAGCTG	2 cut(s)	392, 743
RsaI	GTAC	2 cut(s)	422, 730
RsaNI	GTAC	2 cut(s)	421, 729
RseI	CAYNNNNRTG	3 cut(s)	233, 447, 665
SacI	GAGCTC	1 cut(s)	33
SaqAI	TTAA	6 cut(s)	372, 462, 510, 567, 827, 870
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	5 cut(s)	259, 490, 570, 646, 802
Sau96I	GGNCC	4 cut(s)	123, 135, 136, 817
ScaI	AGTACT	1 cut(s)	730
SchI	GAGTC	1 cut(s)	746
SduI	GDGCHC	4 cut(s)	33, 139, 351, 444
SfaNI	GCATC	6 cut(s)	30, 340, 391, 439, 686, 859
SfcI	CTRYAG	1 cut(s)	547
SinI	GGWCC	1 cut(s)	817
SmiMI	CAYNNNNRTG	3 cut(s)	233, 447, 665
SmlI	CTYRAG	3 cut(s)	326, 435, 732
SmoI	CTYRAG	3 cut(s)	326, 435, 732
SpeI	ACTAGT	1 cut(s)	362
Sse9I	AATT	7 cut(s)	144, 339, 377, 463, 589, 753, 854
SsiI	CCGC	3 cut(s)	155, 233, 815
SspI	AATATT	1 cut(s)	892
SspMI	CTAG	3 cut(s)	152, 363, 488
SstI	GAGCTC	1 cut(s)	33
TaaI	ACNGT	5 cut(s)	420, 526, 539, 551, 724
TaiI	ACGT	1 cut(s)	298
TaqI	TCGA	1 cut(s)	49
TasI	AATT	7 cut(s)	144, 339, 377, 463, 589, 753, 854
TatI	WGTACW	1 cut(s)	728
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	5 cut(s)	20, 84, 106, 250, 356
Tru1I	TTAA	6 cut(s)	372, 462, 510, 567, 827, 870
Tru9I	TTAA	6 cut(s)	372, 462, 510, 567, 827, 870
TscAI	CASTG	3 cut(s)	12, 235, 556
TseFI	GTSAC	1 cut(s)	605
Tsp45I	GTSAC	1 cut(s)	605
TspDTI	ATGAA	5 cut(s)	516, 534, 594, 611, 729
TspGWI	ACGGA	2 cut(s)	108, 396
TspRI	CASTG	3 cut(s)	12, 235, 556
VpaK11BI	GGWCC	1 cut(s)	817
XagI	CCTNNNNNAGG	1 cut(s)	686
XapI	RAATTY	1 cut(s)	339
XbaI	TCTAGA	1 cut(s)	487
XcmI	CCANNNNNNNNNTGG	1 cut(s)	827
XspI	CTAG	3 cut(s)	152, 363, 488
ZrmI	AGTACT	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.