AT5G44280

Zinc finger, C3HC4 type (RING finger)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
17835810 .. 17839303
3494 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G44280.1

Sequence Viewer

Length: 1569 bp
ATGTCTGTCAAGAATAATAGCTTCTCGTCGGCTGAGATTCCCGATGTGGCAGACCAACCACGCGACCGATTTAACCCCGAAGCTACACAGGATCTACAAGAGAAGGATGAGACGAAAGAAGAGAAAGAAGGAGATGAGGAAGTGAAACACGACGAAGCGGAGGAAGACCAAGAAGTAGTGAAACCCAACGACGCCGAGGAAGATGATGATGGTGACGATGCAGAGGAGGACGAGGAAGAAGAAGTAGAAGCAGAGGAAGATGAAGAAGCAGAGGAAGAGGAAGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGATTCTAAAGAAAGAAGTCCATCTTCTATATCTGGAGACCAATCAGAGTTTATGGAAATTGATCTAGGGGAAATCCGTAAAGACGTGCAGTGTCCAATATGCCTAGGTATTATAAAGAAAACAAGGACTGTGATGGAATGTCTCCACAGGTTCTGCCGGGAATGTATTGATAAGTCAATGAGATTGGGGAATAACGAATGTCCTGCTTGCAGGAAGCATTGTGCAAGCCGGCGTTCTCTAAGAGACGATCCGAAATTTGATGCTCTTATTGCTGCTTTATTTACAAATATTGATAGTTATGAGGAAGAGGAACTGGCTTTTCACGAAGATGAAATGGCTCGTAATAAGCAGATTCAAGCATCTATAGCTCAGATATCGCAACGACAATCTGAGGCTCTTGTGAAAAGACGATCTCTTGGTAAAGAGGCAGCAGTCTTAATGAGATCACCGCGTATTGCTAGTGGCTCCAGAAGGAGACGGAACAGCAGAAACATGGAACAACAAAACGCATCAGAAGCTCATGAAGATGATGATAATGATGATAATAACAACAGAGGAAGAGACAAAGATTCGTCTTCAGATGAGCGTGGTACAGAAGTCCGGCAGAAGAAACGTAGAAAACGGTCTACAAGTCGTTCAACACAACACCCTTCTTCTTCAGGTGCAAACAAAAACAATGGTAACTGTGCAGATAACGACACAGAAGTGTATAGAGACACCAAAGGCATATCTCCCGGGCTTGTGTGGAATCCCGAGATACTGGCTTGGGGAAGAGGCGGGACAAGGAGTAACACAAGGCATGGGAATAATACTTCTGGAGGTAGTAGTAAGAGTGTAAGGAATGCCCGTGTGAACAAACTTGTTGAATATCTACGCAGCAGCGTAGATGGATCTAGTGTTGAGTTGGATATTCATGTCAAGCTTGTCTCGCTGGATACAAAATGTATACCAGACTTACCACAGCCATATCTCTGTTGCCGACCCACTTTGCTTGTAAAACAGCTCCGTGAATTCGTTGCACTTCAGATACATTTGAAGACTGAAGAGGTTGAATTGTTAGTAACAAGAAGAAGAGTAGGAGAAGATGCGGCAATAGAGAATCTTCCTGCAGTGACTCCAGCTTCAGCAGCAGCATCTAAAGATGAGATGCTGAGTTTGGAAGACAATGAAACATTGTCAAGGCTCAAAATCGATTTCATTTCAAGCCATGAACAACATTTGATCATAGCTTACCGGAAGAAGCAAACTGAGTGA

Protein Analysis

522

Amino Acids

59.2

Weight (kDa)

4.75

Isoelectric Point (pI)

76.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_2 PF13923 135 - 175 5.4e-12 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 135 - 176 1.1e-07 Ring finger domain
zf-C3HC4 PF00097 136 - 175 5.2e-10 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 428
AccI GTMKAC 2 cut(s) 941, 1261
AccII CGCG 2 cut(s) 63, 766
AciI CCGC 4 cut(s) 158, 764, 1092, 1403
AclWI GGATC 3 cut(s) 99, 557, 1213
AcsI RAATTY 2 cut(s) 569, 1325
AcuI CTGAAG 5 cut(s) 876, 957, 1322, 1377, 1422
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 1 cut(s) 907
AgsI TTSAA 6 cut(s) 671, 954, 1181, 1351, 1367, 1518
AjiI CACGTC 1 cut(s) 400
AleI CACNNNNGTG 1 cut(s) 1019
AluBI AGCT 8 cut(s) 21, 83, 683, 833, 1237, 1318, 1436, 1544
AluI AGCT 8 cut(s) 21, 83, 683, 833, 1237, 1318, 1436, 1544
Alw26I GTCTC 8 cut(s) 104, 345, 461, 552, 784, 870, 1023, 1246
AlwI GGATC 3 cut(s) 99, 557, 1213
AlwNI CAGNNNCTG 1 cut(s) 468
Ama87I CYCGRG 2 cut(s) 1049, 1067
ApeKI GCWGC 6 cut(s) 587, 743, 1191, 1194, 1442, 1445
ApoI RAATTY 2 cut(s) 569, 1325
AspA2I CCTAGG 1 cut(s) 418
AsuC2I CCSGG 3 cut(s) 473, 1050, 1051
AsuHPI GGTGA 2 cut(s) 224, 753
AvaI CYCGRG 2 cut(s) 1049, 1067
AvrII CCTAGG 1 cut(s) 418
BaeI ACNNNNGTAYC 2 cut(s) 897, 930
BbsI GAAGAC 4 cut(s) 171, 882, 1358, 1482
BbvI GCAGC 6 cut(s) 574, 755, 1203, 1206, 1454, 1457
BccI CCATC 4 cut(s) 203, 343, 442, 1196
BcgI CGANNNNNNTGC 2 cut(s) 500, 534
BciVI GTATCC 1 cut(s) 1243
BclI TGATCA 1 cut(s) 1536
BcnI CCSGG 3 cut(s) 473, 1050, 1051
BcoDI GTCTC 8 cut(s) 104, 345, 461, 552, 784, 870, 1023, 1246
BfaI CTAG 4 cut(s) 380, 419, 774, 1209
BfmI CTRYAG 2 cut(s) 678, 1422
BfuI GTATCC 1 cut(s) 1243
BisI GCNGC 7 cut(s) 588, 744, 1192, 1195, 1404, 1443, 1446
BlnI CCTAGG 1 cut(s) 418
BlsI GCNGC 7 cut(s) 589, 745, 1193, 1196, 1405, 1444, 1447
Bme1390I CCNGG 3 cut(s) 473, 1050, 1051
BmeT110I CYCGRG 2 cut(s) 1049, 1067
BmgBI CACGTC 1 cut(s) 400
BmiI GGNNCC 1 cut(s) 781
BmrFI CCNGG 3 cut(s) 473, 1050, 1051
BmsI GCATC 7 cut(s) 208, 565, 683, 833, 1390, 1452, 1457
BpiI GAAGAC 4 cut(s) 171, 882, 1358, 1482
BpmI CTGGAG 4 cut(s) 369, 766, 1152, 1416
BpuMI CCSGG 3 cut(s) 473, 1050, 1051
Bsa29I ATCGAT 1 cut(s) 1506
BsaHI GRCGYC 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 345
BsaJI CCNNGG 3 cut(s) 195, 418, 1049
BsaWI WCCGGW 1 cut(s) 1548
Bse118I RCCGGY 1 cut(s) 543
Bse1I ACTGG 2 cut(s) 633, 1080
BseCI ATCGAT 1 cut(s) 1506
BseDI CCNNGG 3 cut(s) 195, 418, 1049
BseGI GGATG 1 cut(s) 112
BseMII CTCAG 5 cut(s) 24, 696, 698, 1457, 1554
BseNI ACTGG 2 cut(s) 633, 1080
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 6 cut(s) 574, 755, 1203, 1206, 1454, 1457
BsgI GTGCAG 2 cut(s) 422, 1023
Bsh1236I CGCG 2 cut(s) 63, 766
Bsh1285I CGRYCG 1 cut(s) 67
BshVI ATCGAT 1 cut(s) 1506
BsiEI CGRYCG 1 cut(s) 67
BsiHKCI CYCGRG 2 cut(s) 1049, 1067
BsiSI CCGG 5 cut(s) 472, 544, 916, 1050, 1549
BslFI GGGAC 1 cut(s) 1108
BsmAI GTCTC 8 cut(s) 104, 345, 461, 552, 784, 870, 1023, 1246
BsmBI CGTCTC 3 cut(s) 104, 552, 784
BsmFI GGGAC 1 cut(s) 1108
BsmI GAATGC 1 cut(s) 1162
Bso31I GGTCTC 1 cut(s) 345
BsoBI CYCGRG 2 cut(s) 1049, 1067
Bsp143I GATC 7 cut(s) 91, 376, 562, 725, 758, 1205, 1536
BspACI CCGC 4 cut(s) 158, 764, 1092, 1403
BspCNI CTCAG 5 cut(s) 25, 697, 697, 1458, 1555
BspDI ATCGAT 1 cut(s) 1506
BspFNI CGCG 2 cut(s) 63, 766
BspHI TCATGA 1 cut(s) 835
BspLI GGNNCC 1 cut(s) 781
BspMAI CTGCAG 1 cut(s) 1426
BspPI GGATC 3 cut(s) 99, 557, 1213
BspTNI GGTCTC 1 cut(s) 345
BsrFI RCCGGY 1 cut(s) 543
BsrI ACTGG 2 cut(s) 633, 1080
BssAI RCCGGY 1 cut(s) 543
BssECI CCNNGG 3 cut(s) 195, 418, 1049
BssMI GATC 7 cut(s) 91, 376, 562, 725, 758, 1205, 1536
BssNAI GTATAC 1 cut(s) 1262
BssNI GRCGYC 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 418
Bst1107I GTATAC 1 cut(s) 1262
Bst4CI ACNGT 3 cut(s) 445, 939, 1001
Bst6I CTCTTC 8 cut(s) 114, 270, 285, 615, 868, 1081, 1353, 1381
BstACI GRCGYC 1 cut(s) 192
BstC8I GCNNGC 3 cut(s) 523, 541, 545
BstDEI CTNAG 6 cut(s) 33, 554, 684, 705, 1466, 1563
BstF5I GGATG 1 cut(s) 112
BstFNI CGCG 2 cut(s) 63, 766
BstKTI GATC 7 cut(s) 94, 379, 565, 728, 761, 1208, 1539
BstMAI GTCTC 8 cut(s) 104, 345, 461, 552, 784, 870, 1023, 1246
BstMBI GATC 7 cut(s) 91, 376, 562, 725, 758, 1205, 1536
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 5 cut(s) 584, 680, 830, 1243, 1442
BstSCI CCNGG 3 cut(s) 471, 1048, 1049
BstSFI CTRYAG 2 cut(s) 678, 1422
BstUI CGCG 2 cut(s) 63, 766
BstV1I GCAGC 6 cut(s) 574, 755, 1203, 1206, 1454, 1457
BstV2I GAAGAC 4 cut(s) 171, 882, 1358, 1482
BstX2I RGATCY 2 cut(s) 91, 1205
BstYI RGATCY 2 cut(s) 91, 1205
BstZ17I GTATAC 1 cut(s) 1262
Bsu15I ATCGAT 1 cut(s) 1506
BsuI GTATCC 1 cut(s) 1243
BsuTUI ATCGAT 1 cut(s) 1506
BtrI CACGTC 1 cut(s) 400
BtsCI GGATG 1 cut(s) 112
BtsI GCAGTG 2 cut(s) 410, 1431
BtsIMutI CAGTG 2 cut(s) 410, 1431
Cac8I GCNNGC 3 cut(s) 523, 541, 545
CaiI CAGNNNCTG 1 cut(s) 468
CciI TCATGA 1 cut(s) 835
Cfr10I RCCGGY 1 cut(s) 543
Cfr9I CCCGGG 1 cut(s) 1049
ClaI ATCGAT 1 cut(s) 1506
CseI GACGC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 906
CspCI CAANNNNNGTGG 2 cut(s) 1288, 1323
CviAII CATG 5 cut(s) 808, 836, 1115, 1229, 1523
CviQI GTAC 1 cut(s) 906
DdeI CTNAG 6 cut(s) 33, 554, 684, 705, 1466, 1563
DpnI GATC 7 cut(s) 93, 378, 564, 727, 760, 1207, 1538
DpnII GATC 7 cut(s) 91, 376, 562, 725, 758, 1205, 1536
Eam1104I CTCTTC 8 cut(s) 114, 270, 285, 615, 868, 1081, 1353, 1381
EarI CTCTTC 8 cut(s) 114, 270, 285, 615, 868, 1081, 1353, 1381
Eco130I CCWWGG 1 cut(s) 418
Eco31I GGTCTC 1 cut(s) 345
Eco32I GATATC 1 cut(s) 690
Eco57I CTGAAG 5 cut(s) 876, 957, 1322, 1377, 1422
Eco88I CYCGRG 2 cut(s) 1049, 1067
EcoRI GAATTC 1 cut(s) 1325
EcoRV GATATC 1 cut(s) 690
EcoT14I CCWWGG 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 418
Esp3I CGTCTC 3 cut(s) 104, 552, 784
FaeI CATG 5 cut(s) 811, 839, 1118, 1232, 1526
FalI AAGNNNNNCTT 2 cut(s) 322, 354
FaqI GGGAC 1 cut(s) 1108
FatI CATG 5 cut(s) 807, 835, 1114, 1228, 1522
FauI CCCGC 1 cut(s) 1085
FbaI TGATCA 1 cut(s) 1536
FblI GTMKAC 2 cut(s) 941, 1261
Fnu4HI GCNGC 7 cut(s) 588, 744, 1192, 1195, 1404, 1443, 1446
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 7 cut(s) 588, 744, 1192, 1195, 1404, 1443, 1446
FspBI CTAG 4 cut(s) 380, 419, 774, 1209
GluI GCNGC 7 cut(s) 588, 744, 1192, 1195, 1404, 1443, 1446
GsuI CTGGAG 4 cut(s) 369, 766, 1152, 1416
HapII CCGG 5 cut(s) 472, 544, 916, 1050, 1549
HgaI GACGC 1 cut(s) 200
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 5 cut(s) 811, 839, 1118, 1232, 1526
HindIII AAGCTT 1 cut(s) 1235
HinfI GANTC 7 cut(s) 37, 317, 667, 884, 1063, 1414, 1429
HpaII CCGG 5 cut(s) 472, 544, 916, 1050, 1549
HphI GGTGA 2 cut(s) 224, 753
Hpy166II GTNNAC 3 cut(s) 942, 1168, 1262
Hpy188I TCNGA 7 cut(s) 361, 567, 687, 706, 829, 895, 1341
Hpy188III TCNNGA 8 cut(s) 10, 41, 348, 638, 783, 836, 1067, 1131
Hpy8I GTNNAC 3 cut(s) 942, 1168, 1262
Hpy99I CGWCG 3 cut(s) 31, 155, 194
HpyAV CCTTC 4 cut(s) 97, 122, 780, 975
HpyCH4III ACNGT 3 cut(s) 445, 939, 1001
HpyCH4IV ACGT 2 cut(s) 399, 928
HpyCH4V TGCA 8 cut(s) 221, 403, 525, 539, 980, 1004, 1334, 1424
HpyF10VI GCNNNNNNNGC 5 cut(s) 584, 680, 830, 1243, 1442
HpyF3I CTNAG 6 cut(s) 33, 554, 684, 705, 1466, 1563
HpySE526I ACGT 2 cut(s) 399, 928
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 5 cut(s) 811, 839, 1118, 1232, 1526
KroI GCCGGC 1 cut(s) 543
KroNI GCCGGC 1 cut(s) 545
Ksp22I TGATCA 1 cut(s) 1536
Kzo9I GATC 7 cut(s) 91, 376, 562, 725, 758, 1205, 1536
LmnI GCTCC 2 cut(s) 785, 1323
Lsp1109I GCAGC 6 cut(s) 574, 755, 1203, 1206, 1454, 1457
LweI GCATC 7 cut(s) 208, 565, 683, 833, 1390, 1452, 1457
MaeI CTAG 4 cut(s) 380, 419, 774, 1209
MaeII ACGT 2 cut(s) 399, 928
MaeIII GTNAC 5 cut(s) 212, 995, 1103, 1375, 1426
MalI GATC 7 cut(s) 93, 378, 564, 727, 760, 1207, 1538
MboI GATC 7 cut(s) 91, 376, 562, 725, 758, 1205, 1536
MflI RGATCY 2 cut(s) 91, 1205
MluCI AATT 4 cut(s) 372, 569, 1325, 1367
MlyI GAGTC 1 cut(s) 1423
MmeI TCCRAC 1 cut(s) 1200
MroNI GCCGGC 1 cut(s) 543
MseI TTAA 2 cut(s) 72, 752
MslI CAYNNNNRTG 3 cut(s) 642, 840, 1019
MspI CCGG 5 cut(s) 472, 544, 916, 1050, 1549
MspR9I CCNGG 3 cut(s) 473, 1050, 1051
Mva1269I GAATGC 1 cut(s) 1162
MvnI CGCG 2 cut(s) 63, 766
MwoI GCNNNNNNNGC 5 cut(s) 584, 680, 830, 1243, 1442
NaeI GCCGGC 1 cut(s) 545
NciI CCSGG 3 cut(s) 473, 1050, 1051
NdeII GATC 7 cut(s) 91, 376, 562, 725, 758, 1205, 1536
NgoMIV GCCGGC 1 cut(s) 543
NlaIII CATG 5 cut(s) 811, 839, 1118, 1232, 1526
NlaIV GGNNCC 1 cut(s) 781
NmeAIII GCCGAG 1 cut(s) 220
NmuCI GTSAC 2 cut(s) 212, 1426
OliI CACNNNNGTG 1 cut(s) 1019
PagI TCATGA 1 cut(s) 835
PctI GAATGC 1 cut(s) 1162
PdiI GCCGGC 1 cut(s) 545
PfeI GAWTC 6 cut(s) 37, 317, 667, 884, 1063, 1414
PkrI GCNGC 7 cut(s) 589, 745, 1193, 1196, 1405, 1444, 1447
PleI GAGTC 1 cut(s) 1423
PpsI GAGTC 1 cut(s) 1423
PsiI TTATAA 1 cut(s) 428
PspN4I GGNNCC 1 cut(s) 781
PstI CTGCAG 1 cut(s) 1426
PstNI CAGNNNCTG 1 cut(s) 468
PsuI RGATCY 2 cut(s) 91, 1205
RsaI GTAC 1 cut(s) 907
RsaNI GTAC 1 cut(s) 906
RseI CAYNNNNRTG 3 cut(s) 642, 840, 1019
SaqAI TTAA 2 cut(s) 72, 752
SatI GCNGC 7 cut(s) 588, 744, 1192, 1195, 1404, 1443, 1446
Sau3AI GATC 7 cut(s) 91, 376, 562, 725, 758, 1205, 1536
SchI GAGTC 1 cut(s) 1423
ScrFI CCNGG 3 cut(s) 473, 1050, 1051
SfaNI GCATC 7 cut(s) 208, 565, 683, 833, 1390, 1452, 1457
SfcI CTRYAG 2 cut(s) 678, 1422
SmaI CCCGGG 1 cut(s) 1051
SmiMI CAYNNNNRTG 3 cut(s) 642, 840, 1019
Sse9I AATT 4 cut(s) 372, 569, 1325, 1367
SsiI CCGC 4 cut(s) 158, 764, 1092, 1403
SspI AATATT 1 cut(s) 604
SspMI CTAG 4 cut(s) 380, 419, 774, 1209
StyD4I CCNGG 3 cut(s) 471, 1048, 1049
StyI CCWWGG 1 cut(s) 418
TaaI ACNGT 3 cut(s) 445, 939, 1001
TaiI ACGT 2 cut(s) 402, 931
TaqI TCGA 1 cut(s) 1506
TaqII GACCGA 1 cut(s) 81
TasI AATT 4 cut(s) 372, 569, 1325, 1367
TauI GCSGC 1 cut(s) 1406
TfiI GAWTC 6 cut(s) 37, 317, 667, 884, 1063, 1414
Tru1I TTAA 2 cut(s) 72, 752
Tru9I TTAA 2 cut(s) 72, 752
TscAI CASTG 2 cut(s) 410, 1431
TseFI GTSAC 2 cut(s) 212, 1426
TseI GCWGC 6 cut(s) 587, 743, 1191, 1194, 1442, 1445
Tsp45I GTSAC 2 cut(s) 212, 1426
TspDTI ATGAA 7 cut(s) 276, 660, 852, 1217, 1497, 1501, 1539
TspGWI ACGGA 3 cut(s) 380, 808, 1310
TspMI CCCGGG 1 cut(s) 1049
TspRI CASTG 2 cut(s) 410, 1431
XapI RAATTY 2 cut(s) 569, 1325
XmaI CCCGGG 1 cut(s) 1049
XmaJI CCTAGG 1 cut(s) 418
XmiI GTMKAC 2 cut(s) 941, 1261
XspI CTAG 4 cut(s) 380, 419, 774, 1209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.