Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001286

Physical Location & Seq

Genomic Coordinates Forward (+)

5782625 .. 5790240

Gene Structure 7616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG076700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGAATGCCTGCACCGCTTCTGTAGGGAATGCATTGACAAGTCCATGCGACTTGGGAACAATGAATGCCCTGCATGCCGTACACATTGTGCTAGTCGTCGCTCTTTGAGAGATGATCCGAAGTACGATGCCTTAATTGCAGCTATTTATCCGGATATTGACAAGTATGAGGAAGAGGAATTAGCTTTTCATGAAGAAGAGAAGGCTCGCAATAAGCAGATCCAAGCTTCCATTGCCCAGACATTTCGACGACAATCTGAAGCACTTGGTAGGAAGCGAACAACAGCAAAGGCCACTGCAGCTGCATTTATGAGATCACAGGGTAACTATAAAAATTTGAGGAGGAGAAGGAATCATAAAAATACTGTTGAAATTCAAGGATCCGATGACAATGAGGAGGCAAATGGTAATGATGGAGGAAGAGATTCATCTTCTGGTGATGAGCGCAAAGAACCAAGACCAAAAAGACCCAAAAGATGGGCAGGAACTCGATATTATCAGCCTTCATCAGCAACTGCGAATGCAGATGGTGATGATGAAAATGATTATGAGGTGAACAGAGAAGTTATGGGTGCATCTGTGGGGTTTGTTCGCAGTCCAGAAAGGCTTGCATGGGGTAAAGGTGGCATGCGGAGTCATACACGATATGGCAGTTCTAGTGGTGCGAATGGTAAGAGTGCCAGGAACCGCCTTTCTAAGTTGGTGGATTATCTCCGGAACTCGGAAGCTAATGATAAAGGGCTGGATATCCACCTCCTACTTGTTTCTTTTGATGAACAAAGAATACCCAGTCTGCAGAGGCCTTATCTTTGCTGCAGTCCCACCCTGTCAGTTGGACAACTATGTCAGTATGTTGCTGCACAAACTGCACTGCAACCTGATGAAGTGCAAATATACTTTTTAAAAGAACTACAAGCCAAAGTGAACCCATCAGACCCTACAAATGCTTCAGTTTCAACATCTGGTGTTTTAGATTCAAGCAAGGATACACTGCTTCTGTTAAGAGACGATGAATTATTGGGAGAAGTCCAAGTACGCCATCTCATTCGTGGCCATCTGCTTTTGGCGTATCAGAAGAAGTGGAACTTAAACCGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0001709 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010073 GO:0010074 GO:0010076 GO:0010077 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019827 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031519 GO:0032501 GO:0032502 GO:0032991 GO:0035102 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045165 GO:0045814 GO:0045892 GO:0045934 GO:0048507 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0098727 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2

Protein Analysis

366

Amino Acids

41.31

Weight (kDa)

8.85

Isoelectric Point (pI)

55.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4	PF00097	1 - 26	8.6e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	2 - 26	1.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44280 AT5G44280 AT5G44280
fragaria_vesca	FvH4_3g08840 FvH4_3g08840 FvH4_3g08840 FvH4_3g08840 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540
malus_domestica	MD05G1312000.v1.1 MD09G1244000.v1.1 MD10G1291500.v1.1 MD17G1235900.v1.1
prunus_persica	Prupe.3G139900_v2.0.a1 Prupe.3G139900_v2.0.a1 Prupe.3G139900_v2.0.a1 Prupe.3G139900_v2.0.a1 Prupe.3G139900_v2.0.a1 Prupe.4G050700_v2.0.a1 Prupe.4G050700_v2.0.a1 Prupe.4G050700_v2.0.a1
pyrus_communis	pycom05g28800 pycom09g16250 pycom10g24370
rosa_chinensis	RchiOBHm_Chr2g0127611 RchiOBHm_Chr5g0008911
rosa_laevigata	RLG00000018950 RLG00000031615
rosa_multiflora	Rmu_co8349609.1_g000001 Rmu_sc0004677.1_g000011 Rmu_ssc0000200.1_g000019
rosa_roxburghii	Rroxscaffold_1G00067100 Rroxscaffold_1G00067720 Rroxscaffold_2G00116570
rosa_rugosa	Rorug02G0272500 Rorug02G0272500 Rorug02G0272500 Rorug02G0272500 Rorug04G0440100
rosa_samantha	Rh2AG324500 Rh2BG333800 Rh2CG312000 Rh2DG352000 Rh5AG068800 Rh5BG065500 Rh5CG076700 Rh5DG064500
rosa_wichuraiana	Rw2G026350 Rw5G006440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	843
AccB7I	CCANNNNNTGG	1 cut(s)	477
AccIII	TCCGGA	2 cut(s)	151, 714
AciI	CCGC	3 cut(s)	16, 631, 688
AclWI	GGATC	4 cut(s)	110, 214, 375, 388
AcoI	YGGCCR	1 cut(s)	1051
AcsI	RAATTY	2 cut(s)	334, 372
AcuI	CTGAAG	2 cut(s)	279, 933
AdeI	CACNNNGTG	1 cut(s)	89
AfaI	GTAC	3 cut(s)	82, 125, 1035
AfiI	CCNNNNNNNGG	2 cut(s)	477, 721
AgsI	TTSAA	4 cut(s)	371, 377, 957, 978
AjnI	CCWGG	1 cut(s)	680
AluBI	AGCT	5 cut(s)	143, 185, 227, 302, 728
AluI	AGCT	5 cut(s)	143, 185, 227, 302, 728
Alw26I	GTCTC	1 cut(s)	999
AlwI	GGATC	4 cut(s)	110, 214, 375, 388
AlwNI	CAGNNNCTG	1 cut(s)	515
Aor13HI	TCCGGA	2 cut(s)	151, 714
AoxI	GGCC	3 cut(s)	291, 800, 1051
ApeKI	GCWGC	5 cut(s)	140, 299, 302, 813, 857
ApoI	RAATTY	2 cut(s)	334, 372
Asp700I	GAANNNNTTC	1 cut(s)	424
AspLEI	GCGC	1 cut(s)	447
AsuHPI	GGTGA	3 cut(s)	449, 542, 565
BalI	TGGCCA	1 cut(s)	1053
BamHI	GGATCC	1 cut(s)	380
BarI	GAAGNNNNNNTAC	2 cut(s)	1017, 1049
BbvI	GCAGC	5 cut(s)	152, 289, 311, 800, 844
BccI	CCATC	6 cut(s)	407, 471, 521, 937, 1047, 1062
BceAI	ACGGC	1 cut(s)	63
BciT130I	CCWGG	1 cut(s)	682
BciVI	GTATCC	1 cut(s)	979
BcoDI	GTCTC	1 cut(s)	999
BfaI	CTAG	2 cut(s)	93, 657
BfmI	CTRYAG	4 cut(s)	22, 297, 794, 814
BfuI	GTATCC	1 cut(s)	979
BisI	GCNGC	5 cut(s)	141, 300, 303, 814, 858
BlsI	GCNGC	5 cut(s)	142, 301, 304, 815, 859
Bme1390I	CCNGG	1 cut(s)	682
BmiI	GGNNCC	2 cut(s)	382, 686
BmrFI	CCNGG	1 cut(s)	682
BmrI	ACTGGG	1 cut(s)	783
BmsI	GCATC	2 cut(s)	118, 584
BmuI	ACTGGG	1 cut(s)	783
BsaJI	CCNNGG	1 cut(s)	1093
BsaWI	WCCGGW	2 cut(s)	151, 714
Bsc4I	CCNNNNNNNGG	2 cut(s)	477, 721
Bse1I	ACTGG	1 cut(s)	789
Bse3DI	GCAATG	1 cut(s)	231
BseAI	TCCGGA	2 cut(s)	151, 714
BseBI	CCWGG	1 cut(s)	682
BseDI	CCNNGG	1 cut(s)	1093
BseLI	CCNNNNNNNGG	2 cut(s)	477, 721
BseMI	GCAATG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	789
BseRI	GAGGAG	3 cut(s)	355, 358, 410
BseXI	GCAGC	5 cut(s)	152, 289, 311, 800, 844
BsgI	GTGCAG	2 cut(s)	843, 852
BshFI	GGCC	3 cut(s)	293, 802, 1053
BsiSI	CCGG	2 cut(s)	152, 715
BslFI	GGGAC	1 cut(s)	804
BslI	CCNNNNNNNGG	2 cut(s)	477, 721
BsmAI	GTCTC	1 cut(s)	999
BsmBI	CGTCTC	1 cut(s)	999
BsmFI	GGGAC	1 cut(s)	804
BsmI	GAATGC	4 cut(s)	11, 35, 71, 526
BsnI	GGCC	3 cut(s)	293, 802, 1053
Bsp13I	TCCGGA	2 cut(s)	151, 714
Bsp143I	GATC	4 cut(s)	115, 219, 314, 380
BspACI	CCGC	3 cut(s)	16, 631, 688
BspANI	GGCC	3 cut(s)	293, 802, 1053
BspEI	TCCGGA	2 cut(s)	151, 714
BspHI	TCATGA	1 cut(s)	190
BspLI	GGNNCC	2 cut(s)	382, 686
BspMAI	CTGCAG	3 cut(s)	301, 798, 818
BspPI	GGATC	4 cut(s)	110, 214, 375, 388
BsrDI	GCAATG	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	789
BssECI	CCNNGG	1 cut(s)	1093
BssMI	GATC	4 cut(s)	115, 219, 314, 380
Bst2UI	CCWGG	1 cut(s)	682
Bst4CI	ACNGT	2 cut(s)	367, 1094
Bst6I	CTCTTC	3 cut(s)	168, 192, 415
BstAPI	GCANNNNNTGC	1 cut(s)	866
BstC8I	GCNNGC	5 cut(s)	11, 76, 208, 609, 629
BstDEI	CTNAG	1 cut(s)	696
BstDSI	CCRYGG	1 cut(s)	1093
BstHHI	GCGC	1 cut(s)	447
BstKTI	GATC	4 cut(s)	118, 222, 317, 383
BstMAI	GTCTC	1 cut(s)	999
BstMBI	GATC	4 cut(s)	115, 219, 314, 380
BstMWI	GCNNNNNNNGC	6 cut(s)	15, 75, 137, 233, 299, 866
BstNI	CCWGG	1 cut(s)	682
BstNSI	RCATGY	2 cut(s)	78, 631
BstSCI	CCNGG	1 cut(s)	680
BstSFI	CTRYAG	4 cut(s)	22, 297, 794, 814
BstV1I	GCAGC	5 cut(s)	152, 289, 311, 800, 844
BstX2I	RGATCY	2 cut(s)	219, 380
BstYI	RGATCY	2 cut(s)	219, 380
BsuI	GTATCC	1 cut(s)	979
BsuRI	GGCC	3 cut(s)	293, 802, 1053
BtgI	CCRYGG	1 cut(s)	1093
BtsI	GCAGTG	3 cut(s)	294, 869, 989
BtsIMutI	CAGTG	3 cut(s)	294, 869, 989
Cac8I	GCNNGC	5 cut(s)	11, 76, 208, 609, 629
CaiI	CAGNNNCTG	1 cut(s)	515
CciI	TCATGA	1 cut(s)	190
CfoI	GCGC	1 cut(s)	447
Csp6I	GTAC	3 cut(s)	81, 124, 1034
CviAII	CATG	5 cut(s)	46, 75, 191, 612, 628
CviQI	GTAC	3 cut(s)	81, 124, 1034
DdeI	CTNAG	1 cut(s)	696
DpnI	GATC	4 cut(s)	117, 221, 316, 382
DpnII	GATC	4 cut(s)	115, 219, 314, 380
DraI	TTTAAA	1 cut(s)	903
DraIII	CACNNNGTG	1 cut(s)	89
DrdI	GACNNNNNNGTC	1 cut(s)	843
DseDI	GACNNNNNNGTC	1 cut(s)	843
EaeI	YGGCCR	1 cut(s)	1051
Eam1104I	CTCTTC	3 cut(s)	168, 192, 415
EarI	CTCTTC	3 cut(s)	168, 192, 415
Eco147I	AGGCCT	1 cut(s)	802
Eco32I	GATATC	1 cut(s)	748
Eco57I	CTGAAG	2 cut(s)	279, 933
EcoRII	CCWGG	1 cut(s)	680
EcoRV	GATATC	1 cut(s)	748
EcoT22I	ATGCAT	1 cut(s)	35
Esp3I	CGTCTC	1 cut(s)	999
FaeI	CATG	5 cut(s)	49, 78, 194, 615, 631
FalI	AAGNNNNNCTT	1 cut(s)	1070
FaqI	GGGAC	1 cut(s)	804
FatI	CATG	5 cut(s)	45, 74, 190, 611, 627
Fnu4HI	GCNGC	5 cut(s)	141, 300, 303, 814, 858
Fsp4HI	GCNGC	5 cut(s)	141, 300, 303, 814, 858
FspBI	CTAG	2 cut(s)	93, 657
GlaI	GCGC	1 cut(s)	446
GluI	GCNGC	5 cut(s)	141, 300, 303, 814, 858
HaeIII	GGCC	3 cut(s)	293, 802, 1053
HapII	CCGG	2 cut(s)	152, 715
HhaI	GCGC	1 cut(s)	447
Hin1II	CATG	5 cut(s)	49, 78, 194, 615, 631
Hin6I	GCGC	1 cut(s)	445
HinP1I	GCGC	1 cut(s)	445
HindIII	AAGCTT	1 cut(s)	225
HinfI	GANTC	4 cut(s)	352, 425, 634, 974
HpaII	CCGG	2 cut(s)	152, 715
HphI	GGTGA	3 cut(s)	449, 542, 565
Hpy166II	GTNNAC	3 cut(s)	83, 556, 925
Hpy188I	TCNGA	6 cut(s)	120, 259, 385, 724, 934, 1074
Hpy188III	TCNNGA	4 cut(s)	152, 191, 599, 715
Hpy8I	GTNNAC	3 cut(s)	83, 556, 925
Hpy99I	CGWCG	2 cut(s)	102, 252
HpyAV	CCTTC	3 cut(s)	196, 342, 513
HpyCH4III	ACNGT	2 cut(s)	367, 1094
HpyF10VI	GCNNNNNNNGC	6 cut(s)	15, 75, 137, 233, 299, 866
HpyF3I	CTNAG	1 cut(s)	696
Hsp92II	CATG	5 cut(s)	49, 78, 194, 615, 631
HspAI	GCGC	1 cut(s)	445
Kpn2I	TCCGGA	2 cut(s)	151, 714
Kzo9I	GATC	4 cut(s)	115, 219, 314, 380
Lsp1109I	GCAGC	5 cut(s)	152, 289, 311, 800, 844
LweI	GCATC	2 cut(s)	118, 584
MaeI	CTAG	2 cut(s)	93, 657
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	4 cut(s)	117, 221, 316, 382
MboI	GATC	4 cut(s)	115, 219, 314, 380
MboII	GAAGA	6 cut(s)	185, 206, 209, 423, 432, 1087
MflI	RGATCY	2 cut(s)	219, 380
MlsI	TGGCCA	1 cut(s)	1053
MluCI	AATT	5 cut(s)	135, 179, 334, 372, 1013
MluNI	TGGCCA	1 cut(s)	1053
MlyI	GAGTC	1 cut(s)	643
MmeI	TCCRAC	1 cut(s)	814
Mox20I	TGGCCA	1 cut(s)	1053
Mph1103I	ATGCAT	1 cut(s)	35
MroI	TCCGGA	2 cut(s)	151, 714
MroXI	GAANNNNTTC	1 cut(s)	424
MscI	TGGCCA	1 cut(s)	1053
MseI	TTAA	4 cut(s)	134, 902, 1001, 1088
Msp20I	TGGCCA	1 cut(s)	1053
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	2 cut(s)	152, 715
MspR9I	CCNGG	1 cut(s)	682
Mva1269I	GAATGC	4 cut(s)	11, 35, 71, 526
MvaI	CCWGG	1 cut(s)	682
MwoI	GCNNNNNNNGC	6 cut(s)	15, 75, 137, 233, 299, 866
NdeII	GATC	4 cut(s)	115, 219, 314, 380
NlaIII	CATG	5 cut(s)	49, 78, 194, 615, 631
NlaIV	GGNNCC	2 cut(s)	382, 686
NsiI	ATGCAT	1 cut(s)	35
NspI	RCATGY	2 cut(s)	78, 631
PaeI	GCATGC	2 cut(s)	78, 631
PagI	TCATGA	1 cut(s)	190
PceI	AGGCCT	1 cut(s)	802
PctI	GAATGC	4 cut(s)	11, 35, 71, 526
PdmI	GAANNNNTTC	1 cut(s)	424
PfeI	GAWTC	3 cut(s)	352, 425, 974
PflMI	CCANNNNNTGG	1 cut(s)	477
PkrI	GCNGC	5 cut(s)	142, 301, 304, 815, 859
PleI	GAGTC	1 cut(s)	642
PpsI	GAGTC	1 cut(s)	642
Psp6I	CCWGG	1 cut(s)	680
PspGI	CCWGG	1 cut(s)	680
PspN4I	GGNNCC	2 cut(s)	382, 686
PsrI	GAACNNNNNNTAC	2 cut(s)	768, 800
PstI	CTGCAG	3 cut(s)	301, 798, 818
PstNI	CAGNNNCTG	1 cut(s)	515
PsuI	RGATCY	2 cut(s)	219, 380
PvuII	CAGCTG	1 cut(s)	302
RsaI	GTAC	3 cut(s)	82, 125, 1035
RsaNI	GTAC	3 cut(s)	81, 124, 1034
SaqAI	TTAA	4 cut(s)	134, 902, 1001, 1088
SatI	GCNGC	5 cut(s)	141, 300, 303, 814, 858
Sau3AI	GATC	4 cut(s)	115, 219, 314, 380
SchI	GAGTC	1 cut(s)	643
ScrFI	CCNGG	1 cut(s)	682
SetI	ASST	9 cut(s)	145, 187, 229, 304, 555, 625, 730, 756, 880
SfaNI	GCATC	2 cut(s)	118, 584
SfcI	CTRYAG	4 cut(s)	22, 297, 794, 814
SphI	GCATGC	2 cut(s)	78, 631
Sse9I	AATT	5 cut(s)	135, 179, 334, 372, 1013
SseBI	AGGCCT	1 cut(s)	802
SsiI	CCGC	3 cut(s)	16, 631, 688
SspMI	CTAG	2 cut(s)	93, 657
StuI	AGGCCT	1 cut(s)	802
StyD4I	CCNGG	1 cut(s)	680
TaaI	ACNGT	2 cut(s)	367, 1094
TaqI	TCGA	2 cut(s)	247, 490
TasI	AATT	5 cut(s)	135, 179, 334, 372, 1013
TfiI	GAWTC	3 cut(s)	352, 425, 974
Tru1I	TTAA	4 cut(s)	134, 902, 1001, 1088
Tru9I	TTAA	4 cut(s)	134, 902, 1001, 1088
TscAI	CASTG	3 cut(s)	301, 876, 996
TseI	GCWGC	5 cut(s)	140, 299, 302, 813, 857
TspDTI	ATGAA	9 cut(s)	78, 179, 207, 417, 495, 552, 789, 897, 1026
TspRI	CASTG	3 cut(s)	301, 876, 996
Van91I	CCANNNNNTGG	1 cut(s)	477
XapI	RAATTY	2 cut(s)	334, 372
XceI	RCATGY	2 cut(s)	78, 631
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1046
XmnI	GAANNNNTTC	1 cut(s)	424
XspI	CTAG	2 cut(s)	93, 657
Zsp2I	ATGCAT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.