Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8349609.1

Orthogroup ID

OG0001286

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 628

Gene Structure 628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8349609.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 157 bp

ggaatgcatcgacaagtcaatgcgaatggggaacaatgagtgccctgcttgccgcacacactgtgccagtcgacggtctttgagagatgatccaaattatgatgccataattgcaacattatatccagatattgagaaatatgagaaggaggtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0001709 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010073 GO:0010074 GO:0010076 GO:0010077 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019827 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031519 GO:0032501 GO:0032502 GO:0032991 GO:0035102 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045165 GO:0045814 GO:0045892 GO:0045934 GO:0048507 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0098727 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2

Protein Analysis

51

Amino Acids

5.92

Weight (kDa)

5.18

Isoelectric Point (pI)

78.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44280 AT5G44280 AT5G44280
fragaria_vesca	FvH4_3g08840 FvH4_3g08840 FvH4_3g08840 FvH4_3g08840 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540
malus_domestica	MD05G1312000.v1.1 MD09G1244000.v1.1 MD10G1291500.v1.1 MD17G1235900.v1.1
prunus_persica	Prupe.3G139900_v2.0.a1 Prupe.3G139900_v2.0.a1 Prupe.3G139900_v2.0.a1 Prupe.3G139900_v2.0.a1 Prupe.3G139900_v2.0.a1 Prupe.4G050700_v2.0.a1 Prupe.4G050700_v2.0.a1 Prupe.4G050700_v2.0.a1
pyrus_communis	pycom05g28800 pycom09g16250 pycom10g24370
rosa_chinensis	RchiOBHm_Chr2g0127611 RchiOBHm_Chr5g0008911
rosa_laevigata	RLG00000018950 RLG00000031615
rosa_multiflora	Rmu_co8349609.1_g000001 Rmu_sc0004677.1_g000011 Rmu_ssc0000200.1_g000019
rosa_roxburghii	Rroxscaffold_1G00067100 Rroxscaffold_1G00067720 Rroxscaffold_2G00116570
rosa_rugosa	Rorug02G0272500 Rorug02G0272500 Rorug02G0272500 Rorug02G0272500 Rorug04G0440100
rosa_samantha	Rh2AG324500 Rh2BG333800 Rh2CG312000 Rh2DG352000 Rh5AG068800 Rh5BG065500 Rh5CG076700 Rh5DG064500
rosa_wichuraiana	Rw2G026350 Rw5G006440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	71
AciI	CCGC	1 cut(s)	53
AclWI	GGATC	1 cut(s)	84
AdeI	CACNNNGTG	1 cut(s)	63
AfiI	CCNNNNNNNGG	1 cut(s)	73
AlwI	GGATC	1 cut(s)	84
BaeGI	GKGCMC	1 cut(s)	45
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
BmsI	GCATC	2 cut(s)	16, 92
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	67
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseNI	ACTGG	1 cut(s)	67
BseSI	GKGCMC	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmI	GAATGC	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	89
BspACI	CCGC	1 cut(s)	53
BspPI	GGATC	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	67
BssMI	GATC	1 cut(s)	89
Bst4CI	ACNGT	2 cut(s)	63, 76
BstC8I	GCNNGC	1 cut(s)	50
BstKTI	GATC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 111
BstSLI	GKGCMC	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	50
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
DraIII	CACNNNGTG	1 cut(s)	63
EcoT22I	ATGCAT	1 cut(s)	9
FaiI	YATR	5 cut(s)	100, 108, 122, 142, 155
FblI	GTMKAC	1 cut(s)	71
Fnu4HI	GCNGC	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	53
HincII	GTYRAC	1 cut(s)	72
HindII	GTYRAC	1 cut(s)	72
Hpy166II	GTNNAC	1 cut(s)	72
Hpy188III	TCNNGA	1 cut(s)	126
Hpy8I	GTNNAC	1 cut(s)	72
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	2 cut(s)	63, 76
HpyCH4V	TGCA	2 cut(s)	7, 114
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 111
Kzo9I	GATC	1 cut(s)	89
LpnPI	CCDG	3 cut(s)	58, 80, 139
LweI	GCATC	2 cut(s)	16, 92
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	2 cut(s)	95, 109
MnlI	CCTC	1 cut(s)	143
Mph1103I	ATGCAT	1 cut(s)	9
Mva1269I	GAATGC	1 cut(s)	9
MwoI	GCNNNNNNNGC	2 cut(s)	49, 111
NdeII	GATC	1 cut(s)	89
NsiI	ATGCAT	1 cut(s)	9
PctI	GAATGC	1 cut(s)	9
PkrI	GCNGC	1 cut(s)	54
SalI	GTCGAC	1 cut(s)	70
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	1 cut(s)	154
SfaNI	GCATC	2 cut(s)	16, 92
SgeI	CNNG	5 cut(s)	26, 57, 61, 79, 138
Sse9I	AATT	2 cut(s)	95, 109
SsiI	CCGC	1 cut(s)	53
TaaI	ACNGT	2 cut(s)	63, 76
TaqI	TCGA	2 cut(s)	10, 71
TasI	AATT	2 cut(s)	95, 109
TauI	GCSGC	1 cut(s)	55
TscAI	CASTG	1 cut(s)	66
TspRI	CASTG	1 cut(s)	66
XmiI	GTMKAC	1 cut(s)	71
Zsp2I	ATGCAT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.