Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001286

Physical Location & Seq

Genomic Coordinates Forward (+)

39419404 .. 39421866

Gene Structure 2463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG312000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGAAACAATGTTAAAAGGAAAAGTGATAGAAAGAGAGAGCTTAAATCATGAAAGAGATGGCAAGAGTGCTGAAGGAGATAATGGTAAACGGAACAATAAATTCCTCAAAACGTCACTTTTCTTAGAATTGGCTTTCCATGAAGAGGAGAGGACTCGAAATGAGCAGATACAAGCATCAATTGCCCAAATATTCCAACGACAATCAGAAGCTTTAATCAAGAGACGCTCACTTGGCAAAGATACCCAAGATGCATATAATATGAGATCCCTGCGCAATAATCGGAGTGGTTTCCGAAGGAGAAGAAACTCTCAAGCCACTGAACTCCAAGGGTTTGAAGACAATGAGGATGAAAATGACACTAGTAACATGGGCACAAAATCGCCTTCAGCTGAAGAGAGACATACTGAAGTGAGGCCAAGACGGCTAAGAAGACGGACAGGATTTCGATCATCTCAGCCTTCATCATCTGTGACCAATTCAAATGGAGGATGCACTGAAAATGATGTAGAAGTGAGCCGAGAGAACAAGGGAATTTCACCGGGTCTTGTGTGGAGCTCTGAAATGCTTGCTTGGGGCCGGGGTGGTGCTCGGAGTCACACCCGGCATGGCATTGCAAGCGGTTGCAGCAATAAGAGTTCTCGAAGCACTCGCTTATCAAAGTTGGTCGATTACCTTCGGAACCTCAAGGAAAACAATGATGAGTTAGATGTTCATCTCATGCTTATTTCTTTGGATAAAAGATGCACACCAAACTTGCAGCAGCCTCACCTTTGCTGTAGGCCGAGTTTGTCAGTCAAGCACCTTTGTGAATATGTTGCTCGTCAAACACCTTTGCAAGCCGAAGAAGTTGAGTTGTTCTCAGTTAAAGGACACCAGAATTCCAATGACGAAAAATTGACTGATCACCCATCAGCGTTATTGAATGATCTGGATTCAGTTCCCCTTTTGGTTGATCCATGCAGATATGATTTGCAAATTCTGCAAGCAGAAGAAACTTTGGCAGGGATTAAAGCCAATTGCACTTCCAGTAGGGACCGCTTGATTCTAGCATACAGGCGGAAGGAGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0001709 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010073 GO:0010074 GO:0010076 GO:0010077 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019827 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031519 GO:0032501 GO:0032502 GO:0032991 GO:0035102 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045165 GO:0045814 GO:0045892 GO:0045934 GO:0048507 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0098727 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2

Protein Analysis

357

Amino Acids

40.62

Weight (kDa)

8.86

Isoelectric Point (pI)

65.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44280 AT5G44280 AT5G44280
fragaria_vesca	FvH4_3g08840 FvH4_3g08840 FvH4_3g08840 FvH4_3g08840 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540
malus_domestica	MD05G1312000.v1.1 MD09G1244000.v1.1 MD10G1291500.v1.1 MD17G1235900.v1.1
prunus_persica	Prupe.3G139900_v2.0.a1 Prupe.3G139900_v2.0.a1 Prupe.3G139900_v2.0.a1 Prupe.3G139900_v2.0.a1 Prupe.3G139900_v2.0.a1 Prupe.4G050700_v2.0.a1 Prupe.4G050700_v2.0.a1 Prupe.4G050700_v2.0.a1
pyrus_communis	pycom05g28800 pycom09g16250 pycom10g24370
rosa_chinensis	RchiOBHm_Chr2g0127611 RchiOBHm_Chr5g0008911
rosa_laevigata	RLG00000018950 RLG00000031615
rosa_multiflora	Rmu_co8349609.1_g000001 Rmu_sc0004677.1_g000011 Rmu_ssc0000200.1_g000019
rosa_roxburghii	Rroxscaffold_1G00067100 Rroxscaffold_1G00067720 Rroxscaffold_2G00116570
rosa_rugosa	Rorug02G0272500 Rorug02G0272500 Rorug02G0272500 Rorug02G0272500 Rorug04G0440100
rosa_samantha	Rh2AG324500 Rh2BG333800 Rh2CG312000 Rh2DG352000 Rh5AG068800 Rh5BG065500 Rh5CG076700 Rh5DG064500
rosa_wichuraiana	Rw2G026350 Rw5G006440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	275
AciI	CCGC	3 cut(s)	621, 1039, 1060
AclWI	GGATC	2 cut(s)	261, 950
AcsI	RAATTY	4 cut(s)	101, 534, 880, 978
AcuI	CTGAAG	4 cut(s)	93, 372, 414, 429
AfiI	CCNNNNNNNGG	1 cut(s)	145
AgsI	TTSAA	3 cut(s)	338, 483, 925
AhlI	ACTAGT	1 cut(s)	362
AleI	CACNNNNGTG	1 cut(s)	807
AluBI	AGCT	4 cut(s)	42, 212, 392, 558
AluI	AGCT	4 cut(s)	42, 212, 392, 558
Alw21I	GWGCWC	2 cut(s)	560, 592
Alw26I	GTCTC	2 cut(s)	217, 394
AlwI	GGATC	2 cut(s)	261, 950
AoxI	GGCC	3 cut(s)	416, 577, 782
ApeKI	GCWGC	3 cut(s)	627, 760, 763
ApoI	RAATTY	4 cut(s)	101, 534, 880, 978
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	2 cut(s)	577, 1036
AsuC2I	CCSGG	3 cut(s)	543, 581, 604
AsuHPI	GGTGA	3 cut(s)	531, 761, 899
AvaII	GGWCC	1 cut(s)	1036
BaeGI	GKGCMC	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	560
BbsI	GAAGAC	2 cut(s)	345, 439
Bbv12I	GWGCWC	2 cut(s)	560, 592
BbvI	GCAGC	3 cut(s)	639, 772, 775
BccI	CCATC	2 cut(s)	53, 919
BceAI	ACGGC	1 cut(s)	440
BclI	TGATCA	1 cut(s)	904
BcnI	CCSGG	3 cut(s)	543, 581, 604
BcoDI	GTCTC	2 cut(s)	217, 394
BcuI	ACTAGT	1 cut(s)	362
BfaI	CTAG	3 cut(s)	363, 1049, 1072
BfmI	CTRYAG	1 cut(s)	778
BglI	GCCNNNNNGGC	1 cut(s)	424
BglII	AGATCT	1 cut(s)	1068
BisI	GCNGC	3 cut(s)	628, 761, 764
BlsI	GCNGC	3 cut(s)	629, 762, 765
Bme1390I	CCNGG	3 cut(s)	543, 581, 604
Bme18I	GGWCC	1 cut(s)	1036
BmgT120I	GGNCC	2 cut(s)	577, 1036
BmiI	GGNNCC	3 cut(s)	578, 683, 1037
BmrFI	CCNGG	3 cut(s)	543, 581, 604
BmsI	GCATC	4 cut(s)	185, 241, 482, 734
BpiI	GAAGAC	2 cut(s)	345, 439
BplI	GAGNNNNNCTC	2 cut(s)	845, 877
BpuEI	CTTGAG	2 cut(s)	297, 671
BpuMI	CCSGG	3 cut(s)	543, 581, 604
BsaBI	GATNNNNATC	2 cut(s)	448, 714
BsaJI	CCNNGG	2 cut(s)	328, 580
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse1I	ACTGG	1 cut(s)	1029
Bse3DI	GCAATG	1 cut(s)	612
Bse8I	GATNNNNATC	2 cut(s)	448, 714
BseDI	CCNNGG	2 cut(s)	328, 580
BseGI	GGATG	2 cut(s)	355, 497
BseJI	GATNNNNATC	2 cut(s)	448, 714
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMI	GCAATG	1 cut(s)	612
BseMII	CTCAG	2 cut(s)	470, 876
BseNI	ACTGG	1 cut(s)	1029
BseRI	GAGGAG	1 cut(s)	161
BseSI	GKGCMC	1 cut(s)	377
BseXI	GCAGC	3 cut(s)	639, 772, 775
BshFI	GGCC	3 cut(s)	418, 579, 784
BsiHKAI	GWGCWC	2 cut(s)	560, 592
BsiSI	CCGG	3 cut(s)	542, 580, 604
BslFI	GGGAC	1 cut(s)	1049
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	2 cut(s)	217, 394
BsmBI	CGTCTC	1 cut(s)	217
BsmFI	GGGAC	1 cut(s)	1049
BsnI	GGCC	3 cut(s)	418, 579, 784
Bsp1286I	GDGCHC	3 cut(s)	377, 560, 592
Bsp143I	GATC	6 cut(s)	266, 449, 904, 928, 955, 1068
BspACI	CCGC	3 cut(s)	621, 1039, 1060
BspANI	GGCC	3 cut(s)	418, 579, 784
BspCNI	CTCAG	2 cut(s)	469, 875
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	3 cut(s)	578, 683, 1037
BspPI	GGATC	2 cut(s)	261, 950
BsrDI	GCAATG	1 cut(s)	612
BsrI	ACTGG	1 cut(s)	1029
BssECI	CCNNGG	2 cut(s)	328, 580
BssMI	GATC	6 cut(s)	266, 449, 904, 928, 955, 1068
BssT1I	CCWWGG	1 cut(s)	328
Bst6I	CTCTTC	2 cut(s)	138, 390
BstAPI	GCANNNNNTGC	2 cut(s)	182, 982
BstC8I	GCNNGC	4 cut(s)	570, 619, 840, 987
BstDEI	CTNAG	4 cut(s)	124, 428, 456, 862
BstF5I	GGATG	2 cut(s)	355, 497
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	6 cut(s)	269, 452, 907, 931, 958, 1071
BstMAI	GTCTC	2 cut(s)	217, 394
BstMBI	GATC	6 cut(s)	266, 449, 904, 928, 955, 1068
BstMWI	GCNNNNNNNGC	6 cut(s)	182, 234, 424, 618, 627, 982
BstSCI	CCNGG	3 cut(s)	541, 579, 602
BstSFI	CTRYAG	1 cut(s)	778
BstSLI	GKGCMC	1 cut(s)	377
BstV1I	GCAGC	3 cut(s)	639, 772, 775
BstV2I	GAAGAC	2 cut(s)	345, 439
BstX2I	RGATCY	2 cut(s)	266, 1068
BstYI	RGATCY	2 cut(s)	266, 1068
BsuRI	GGCC	3 cut(s)	418, 579, 784
BtsCI	GGATG	2 cut(s)	355, 497
BtsIMutI	CAGTG	2 cut(s)	318, 495
Cac8I	GCNNGC	4 cut(s)	570, 619, 840, 987
CciI	TCATGA	1 cut(s)	49
CfoI	GCGC	1 cut(s)	276
Cfr13I	GGNCC	2 cut(s)	577, 1036
CseI	GACGC	1 cut(s)	234
CviAII	CATG	6 cut(s)	50, 140, 370, 608, 721, 960
DdeI	CTNAG	4 cut(s)	124, 428, 456, 862
DpnI	GATC	6 cut(s)	268, 451, 906, 930, 957, 1070
DpnII	GATC	6 cut(s)	266, 449, 904, 928, 955, 1068
Eam1104I	CTCTTC	2 cut(s)	138, 390
EarI	CTCTTC	2 cut(s)	138, 390
Ecl136II	GAGCTC	1 cut(s)	558
Eco130I	CCWWGG	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	560
Eco47I	GGWCC	1 cut(s)	1036
Eco53kI	GAGCTC	1 cut(s)	558
Eco57I	CTGAAG	4 cut(s)	93, 372, 414, 429
EcoICRI	GAGCTC	1 cut(s)	558
EcoRI	GAATTC	1 cut(s)	880
EcoT14I	CCWWGG	1 cut(s)	328
EcoT22I	ATGCAT	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	560
ErhI	CCWWGG	1 cut(s)	328
Esp3I	CGTCTC	1 cut(s)	217
FaeI	CATG	6 cut(s)	53, 143, 373, 611, 724, 963
FaqI	GGGAC	1 cut(s)	1049
FatI	CATG	6 cut(s)	49, 139, 369, 607, 720, 959
FbaI	TGATCA	1 cut(s)	904
Fnu4HI	GCNGC	3 cut(s)	628, 761, 764
FokI	GGATG	2 cut(s)	362, 504
FriOI	GRGCYC	1 cut(s)	560
Fsp4HI	GCNGC	3 cut(s)	628, 761, 764
FspBI	CTAG	3 cut(s)	363, 1049, 1072
FspI	TGCGCA	1 cut(s)	275
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	3 cut(s)	628, 761, 764
HaeIII	GGCC	3 cut(s)	418, 579, 784
HapII	CCGG	3 cut(s)	542, 580, 604
HgaI	GACGC	1 cut(s)	234
HhaI	GCGC	1 cut(s)	276
Hin1II	CATG	6 cut(s)	53, 143, 373, 611, 724, 963
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	4 cut(s)	154, 595, 935, 1045
HpaII	CCGG	3 cut(s)	542, 580, 604
HphI	GGTGA	3 cut(s)	531, 761, 899
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	6 cut(s)	208, 285, 296, 562, 594, 681
Hpy188III	TCNNGA	4 cut(s)	50, 220, 642, 932
Hpy8I	GTNNAC	1 cut(s)	89
HpyAV	CCTTC	6 cut(s)	68, 291, 396, 471, 686, 1057
HpyCH4IV	ACGT	1 cut(s)	113
HpyF10VI	GCNNNNNNNGC	6 cut(s)	182, 234, 424, 618, 627, 982
HpyF3I	CTNAG	4 cut(s)	124, 428, 456, 862
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	6 cut(s)	53, 143, 373, 611, 724, 963
HspAI	GCGC	1 cut(s)	274
Ksp22I	TGATCA	1 cut(s)	904
Kzo9I	GATC	6 cut(s)	266, 449, 904, 928, 955, 1068
LmnI	GCTCC	1 cut(s)	555
Lsp1109I	GCAGC	3 cut(s)	639, 772, 775
LweI	GCATC	4 cut(s)	185, 241, 482, 734
MaeI	CTAG	3 cut(s)	363, 1049, 1072
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	4 cut(s)	114, 365, 472, 596
MalI	GATC	6 cut(s)	268, 451, 906, 930, 957, 1070
MboI	GATC	6 cut(s)	266, 449, 904, 928, 955, 1068
MboII	GAAGA	7 cut(s)	155, 315, 350, 407, 444, 857, 1004
MfeI	CAATTG	2 cut(s)	180, 1018
MflI	RGATCY	2 cut(s)	266, 1068
MhlI	GDGCHC	3 cut(s)	377, 560, 592
MluCI	AATT	9 cut(s)	101, 128, 180, 478, 534, 880, 896, 978, 1018
MlyI	GAGTC	2 cut(s)	148, 604
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	8 cut(s)	116, 139, 144, 340, 408, 482, 695, 777
Mph1103I	ATGCAT	1 cut(s)	256
MseI	TTAA	5 cut(s)	14, 44, 215, 867, 1011
MslI	CAYNNNNRTG	1 cut(s)	807
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	3 cut(s)	542, 580, 604
MspR9I	CCNGG	3 cut(s)	543, 581, 604
MunI	CAATTG	2 cut(s)	180, 1018
MwoI	GCNNNNNNNGC	6 cut(s)	182, 234, 424, 618, 627, 982
NciI	CCSGG	3 cut(s)	543, 581, 604
NdeII	GATC	6 cut(s)	266, 449, 904, 928, 955, 1068
NlaIII	CATG	6 cut(s)	53, 143, 373, 611, 724, 963
NlaIV	GGNNCC	3 cut(s)	578, 683, 1037
NmeAIII	GCCGAG	2 cut(s)	545, 810
NmuCI	GTSAC	3 cut(s)	114, 472, 596
NsbI	TGCGCA	1 cut(s)	275
NsiI	ATGCAT	1 cut(s)	256
OliI	CACNNNNGTG	1 cut(s)	807
PagI	TCATGA	1 cut(s)	49
PfeI	GAWTC	2 cut(s)	935, 1045
PkrI	GCNGC	3 cut(s)	629, 762, 765
PleI	GAGTC	2 cut(s)	148, 603
PpsI	GAGTC	2 cut(s)	148, 603
Psp124BI	GAGCTC	1 cut(s)	560
PspN4I	GGNNCC	3 cut(s)	578, 683, 1037
PspPI	GGNCC	2 cut(s)	577, 1036
PsuI	RGATCY	2 cut(s)	266, 1068
PvuII	CAGCTG	1 cut(s)	392
RseI	CAYNNNNRTG	1 cut(s)	807
SacI	GAGCTC	1 cut(s)	560
SaqAI	TTAA	5 cut(s)	14, 44, 215, 867, 1011
SatI	GCNGC	3 cut(s)	628, 761, 764
Sau3AI	GATC	6 cut(s)	266, 449, 904, 928, 955, 1068
Sau96I	GGNCC	2 cut(s)	577, 1036
SchI	GAGTC	2 cut(s)	148, 604
ScrFI	CCNGG	3 cut(s)	543, 581, 604
SduI	GDGCHC	3 cut(s)	377, 560, 592
SfaNI	GCATC	4 cut(s)	185, 241, 482, 734
SfcI	CTRYAG	1 cut(s)	778
SinI	GGWCC	1 cut(s)	1036
SmiMI	CAYNNNNRTG	1 cut(s)	807
SmlI	CTYRAG	2 cut(s)	312, 686
SmoI	CTYRAG	2 cut(s)	312, 686
SpeI	ACTAGT	1 cut(s)	362
Sse9I	AATT	9 cut(s)	101, 128, 180, 478, 534, 880, 896, 978, 1018
SsiI	CCGC	3 cut(s)	621, 1039, 1060
SspI	AATATT	1 cut(s)	192
SspMI	CTAG	3 cut(s)	363, 1049, 1072
SstI	GAGCTC	1 cut(s)	560
StyD4I	CCNGG	3 cut(s)	541, 579, 602
StyI	CCWWGG	1 cut(s)	328
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	4 cut(s)	157, 448, 643, 669
TasI	AATT	9 cut(s)	101, 128, 180, 478, 534, 880, 896, 978, 1018
TfiI	GAWTC	2 cut(s)	935, 1045
Tru1I	TTAA	5 cut(s)	14, 44, 215, 867, 1011
Tru9I	TTAA	5 cut(s)	14, 44, 215, 867, 1011
TscAI	CASTG	2 cut(s)	325, 502
TseFI	GTSAC	3 cut(s)	114, 472, 596
TseI	GCWGC	3 cut(s)	627, 760, 763
Tsp45I	GTSAC	3 cut(s)	114, 472, 596
TspDTI	ATGAA	5 cut(s)	66, 156, 366, 453, 704
TspGWI	ACGGA	2 cut(s)	106, 451
TspRI	CASTG	2 cut(s)	325, 502
VpaK11BI	GGWCC	1 cut(s)	1036
XapI	RAATTY	4 cut(s)	101, 534, 880, 978
XspI	CTAG	3 cut(s)	363, 1049, 1072
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.