pycom10g24370

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
26242686 .. 26247607
4922 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g24370.11

Sequence Viewer

Length: 1542 bp
ATGATTGTATTGTTAAATAGCAACCTCTACCCCTCCGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGGTCAGCCACACTCCACCACCACCACCACCCACCACCGCCACCTTCATCCTTCTCTCTCTCCTCTCTCCGAGACCACCACAATCAGCTCACAATTTCACTCTCACACGCAACCGTTTCGTTCCTTGCTAAATTTCCGCCGCAAACCAGAGCAATGCCGGCACAGAAGCGCACCCACGAGGCCATGGAAGATGATCTTCCGCAGAACTACCGAGAAAACAGCCACGAAACGCCGCAAGACGAAGAGGAGTCCGATCGAAGACCGTTACAGAGCACCGAAGAGAAAGACGAATTTGTCATAGTGAAATTGGCAGAAATTCGGAAAGAAGTCCAGTGCCCTATCTGTTTAGGGATCATTCGGAAAACAAGGACCGTGATGGAATGCCTGCATCGCTTCTGCAGGGAATGCATTGACAAGTCCATGCGCCTGGGGAACAATGAATGCCCTGCATGCCGCACCCATTGTGCTAGTCGCCGCTCTTTGAGAGATGACCCAAACTATGACGCCTTAATTGCAGCTATATATCCAGATATTGACAAGTATGAGGAAGAGGAATTGGCCTTTCATGAAGAAGAGAAGGCTCGCAATAAGCAGATCCAAGCTTCCATTGCCCAGACATTTCAACGACAAACCGAGGCACTAGGAAGGAAACGAACAACAGCTAAAGCCACTGCAGCTGCATTTATGAGGAGATCACGGGGTAGCTATCGAAATGCGAGGGGGAGAAGGAACTATAGAAATGTTGCTGAACATCATGGGTCCGATGACAATGAGGATGTAAATGGTAATGATGGCGGTAGAGATTTGTCTTCTGGTGATGAGCACACAGAACCAAGACCAAAGAGATCCAAAAGATGGAGAGGAGGTCGATATTATCAGCCCTCGTCGGCAGCTGCTAATGCAGATAGTGATGATGAAAATGATTATGAAATGAACAGATCAGAGATTCTGGGTGCTTCTGTGGGGCGTGTTGGCAGCTCAGAGAGGCTTTCCTGGGGAAAAGGTGGCATGCGGAGTCATACACGGTATGGCAGTTCAAGTGGTGGCAATGGTAAAAATGCCAGGAACATCCGCCTCTCTAGGTTGGTAGAGTATCTTCGGAACTCGGGAGATAACGATGACGAGTTGGACATCCACCTCCTGCTTGTTTCTTTCGATGAGCAAAGAATACCAAGTTTGCAGCGGCCATATCTTTGCTGCCGGTCTACCCTTTCAGTTGGACATTTATGTCAGTATGTAGCTCTCCGAACCGCTTCTCAAGCCGAAGAAATTGAAATATACTTGGTGAAAGAGCTGCATGCCGAATTCGGTCATTCAACTGCCACCAATATTAAAATTTCCAAGTCTCTTGTTCTGGATTCAAGCAAAGAAAACCTGCAACTTTTAAAGGAGGAAGAAACTTTGGCAGAACTTAGAACTCACAATCTCATTCCGGGCTATCTGATTTTGGCATATCAGAAGAAATGGAACTGA

Protein Analysis

514

Amino Acids

58.29

Weight (kDa)

7.08

Isoelectric Point (pI)

60.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 362, 1296
Acc36I ACCTGC 1 cut(s) 1452
AccB7I CCANNNNNTGG 1 cut(s) 924
AccBSI CCGCTC 1 cut(s) 546
AccI GTMKAC 1 cut(s) 1274
AclWI GGATC 3 cut(s) 428, 658, 909
AcoI YGGCCR 1 cut(s) 1253
AcsI RAATTY 5 cut(s) 200, 359, 384, 1373, 1404
AcyI GRCGYC 1 cut(s) 573
AfiI CCNNNNNNNGG 1 cut(s) 924
AgsI TTSAA 5 cut(s) 692, 1107, 1343, 1386, 1431
AjnI CCWGG 3 cut(s) 495, 1061, 1130
Alw21I GWGCWC 2 cut(s) 344, 894
Alw26I GTCTC 2 cut(s) 135, 1419
AlwI GGATC 3 cut(s) 428, 658, 909
Ama87I CYCGRG 1 cut(s) 1174
AoxI GGCC 3 cut(s) 249, 627, 1253
ApeKI GCWGC 9 cut(s) 584, 743, 746, 959, 962, 1044, 1249, 1266, 1363
ApoI RAATTY 5 cut(s) 200, 359, 384, 1373, 1404
Asp700I GAANNNNTTC 1 cut(s) 1321
AspLEI GCGC 2 cut(s) 240, 495
AspS9I GGNCC 2 cut(s) 438, 828
AsuC2I CCSGG 1 cut(s) 1503
AsuHPI GGTGA 2 cut(s) 896, 1366
AvaI CYCGRG 1 cut(s) 1174
AvaII GGWCC 2 cut(s) 438, 828
BaeGI GKGCMC 1 cut(s) 407
BarI GAAGNNNNNNTAC 2 cut(s) 1149, 1181
BauI CACGAG 1 cut(s) 245
BbsI GAAGAC 2 cut(s) 334, 870
Bbv12I GWGCWC 2 cut(s) 344, 894
BbvI GCAGC 9 cut(s) 596, 733, 755, 949, 971, 1056, 1253, 1261, 1350
BccI CCATC 3 cut(s) 439, 854, 918
BcgI CGANNNNNNTGC 2 cut(s) 168, 202
BciT130I CCWGG 3 cut(s) 497, 1063, 1132
BcnI CCSGG 1 cut(s) 1503
BcoDI GTCTC 2 cut(s) 135, 1419
BfaI CTAG 3 cut(s) 537, 710, 1149
BfmI CTRYAG 3 cut(s) 466, 741, 802
BfuAI ACCTGC 1 cut(s) 1452
Bme1390I CCNGG 4 cut(s) 497, 1063, 1132, 1503
Bme18I GGWCC 2 cut(s) 438, 828
BmeT110I CYCGRG 1 cut(s) 1174
BmgT120I GGNCC 2 cut(s) 438, 828
BmiI GGNNCC 1 cut(s) 829
BmrFI CCNGG 4 cut(s) 497, 1063, 1132, 1503
BmsI GCATC 1 cut(s) 466
BpiI GAAGAC 2 cut(s) 334, 870
BpuEI CTTGAG 1 cut(s) 1311
BpuMI CCSGG 1 cut(s) 1503
BsaHI GRCGYC 1 cut(s) 573
BsaI GGTCTC 1 cut(s) 135
BsaJI CCNNGG 4 cut(s) 252, 496, 702, 1062
BsaXI ACNNNNNCTCC 2 cut(s) 919, 949
Bsc4I CCNNNNNNNGG 1 cut(s) 924
Bse118I RCCGGY 2 cut(s) 226, 1269
Bse1I ACTGG 1 cut(s) 400
Bse3DI GCAATG 3 cut(s) 228, 675, 1123
BseBI CCWGG 3 cut(s) 497, 1063, 1132
BseDI CCNNGG 4 cut(s) 252, 496, 702, 1062
BseGI GGATG 4 cut(s) 116, 850, 1137, 1200
BseLI CCNNNNNNNGG 1 cut(s) 924
BseMI GCAATG 3 cut(s) 228, 675, 1123
BseMII CTCAG 1 cut(s) 1062
BseNI ACTGG 1 cut(s) 400
BseRI GAGGAG 4 cut(s) 121, 329, 772, 945
BseSI GKGCMC 1 cut(s) 407
BseXI GCAGC 9 cut(s) 596, 733, 755, 949, 971, 1056, 1253, 1261, 1350
Bsh1285I CGRYCG 1 cut(s) 325
BshFI GGCC 3 cut(s) 251, 629, 1255
BsiEI CGRYCG 1 cut(s) 325
BsiHKAI GWGCWC 2 cut(s) 344, 894
BsiHKCI CYCGRG 1 cut(s) 1174
BsiSI CCGG 3 cut(s) 227, 1270, 1502
BslI CCNNNNNNNGG 1 cut(s) 924
BsmAI GTCTC 2 cut(s) 135, 1419
BsmI GAATGC 3 cut(s) 455, 479, 515
BsnI GGCC 3 cut(s) 251, 629, 1255
Bso31I GGTCTC 1 cut(s) 135
BsoBI CYCGRG 1 cut(s) 1174
Bsp1286I GDGCHC 3 cut(s) 344, 407, 894
Bsp143I GATC 7 cut(s) 262, 322, 420, 663, 761, 914, 1007
Bsp19I CCATGG 1 cut(s) 252
BspANI GGCC 3 cut(s) 251, 629, 1255
BspCNI CTCAG 1 cut(s) 1061
BspHI TCATGA 1 cut(s) 634
BspLI GGNNCC 1 cut(s) 829
BspMAI CTGCAG 2 cut(s) 470, 745
BspMI ACCTGC 1 cut(s) 1452
BspPI GGATC 3 cut(s) 428, 658, 909
BspTNI GGTCTC 1 cut(s) 135
BsrBI CCGCTC 1 cut(s) 546
BsrDI GCAATG 3 cut(s) 228, 675, 1123
BsrFI RCCGGY 2 cut(s) 226, 1269
BsrI ACTGG 1 cut(s) 400
BssAI RCCGGY 2 cut(s) 226, 1269
BssECI CCNNGG 4 cut(s) 252, 496, 702, 1062
BssMI GATC 7 cut(s) 262, 322, 420, 663, 761, 914, 1007
BssNI GRCGYC 1 cut(s) 573
BssSI CACGAG 1 cut(s) 245
BssT1I CCWWGG 1 cut(s) 252
Bst2BI CACGAG 1 cut(s) 245
Bst2UI CCWGG 3 cut(s) 497, 1063, 1132
Bst4CI ACNGT 4 cut(s) 184, 333, 442, 1095
Bst6I CTCTTC 4 cut(s) 306, 342, 612, 636
BstACI GRCGYC 1 cut(s) 573
BstAPI GCANNNNNTGC 1 cut(s) 474
BstC8I GCNNGC 6 cut(s) 228, 455, 520, 652, 1079, 1368
BstDEI CTNAG 2 cut(s) 1048, 1481
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 4 cut(s) 116, 850, 1137, 1200
BstHHI GCGC 2 cut(s) 240, 495
BstKTI GATC 7 cut(s) 265, 325, 423, 666, 764, 917, 1010
BstMAI GTCTC 2 cut(s) 135, 1419
BstMBI GATC 7 cut(s) 262, 322, 420, 663, 761, 914, 1007
BstMCI CGRYCG 1 cut(s) 325
BstMWI GCNNNNNNNGC 9 cut(s) 227, 459, 474, 519, 581, 677, 743, 968, 1328
BstNI CCWGG 3 cut(s) 497, 1063, 1132
BstNSI RCATGY 3 cut(s) 522, 1081, 1370
BstSCI CCNGG 4 cut(s) 495, 1061, 1130, 1501
BstSFI CTRYAG 3 cut(s) 466, 741, 802
BstSLI GKGCMC 1 cut(s) 407
BstV1I GCAGC 9 cut(s) 596, 733, 755, 949, 971, 1056, 1253, 1261, 1350
BstV2I GAAGAC 2 cut(s) 334, 870
BstX2I RGATCY 2 cut(s) 663, 914
BstXI CCANNNNNNTGG 1 cut(s) 496
BstYI RGATCY 2 cut(s) 663, 914
BsuRI GGCC 3 cut(s) 251, 629, 1255
BtgI CCRYGG 1 cut(s) 252
BtgZI GCGATG 1 cut(s) 443
BtsCI GGATG 4 cut(s) 116, 850, 1137, 1200
BtsI GCAGTG 1 cut(s) 738
BtsIMutI CAGTG 2 cut(s) 407, 738
BveI ACCTGC 1 cut(s) 1452
Cac8I GCNNGC 6 cut(s) 228, 455, 520, 652, 1079, 1368
CciI TCATGA 1 cut(s) 634
CfoI GCGC 2 cut(s) 240, 495
Cfr10I RCCGGY 2 cut(s) 226, 1269
Cfr13I GGNCC 2 cut(s) 438, 828
CseI GACGC 1 cut(s) 581
CviAII CATG 7 cut(s) 253, 490, 519, 635, 824, 1078, 1367
DdeI CTNAG 2 cut(s) 1048, 1481
DpnI GATC 7 cut(s) 264, 324, 422, 665, 763, 916, 1009
DpnII GATC 7 cut(s) 262, 322, 420, 663, 761, 914, 1007
DraI TTTAAA 1 cut(s) 1455
DrdI GACNNNNNNGTC 2 cut(s) 362, 1296
DseDI GACNNNNNNGTC 2 cut(s) 362, 1296
EaeI YGGCCR 1 cut(s) 1253
Eam1104I CTCTTC 4 cut(s) 306, 342, 612, 636
EarI CTCTTC 4 cut(s) 306, 342, 612, 636
EciI GGCGGA 3 cut(s) 25, 195, 1130
Eco130I CCWWGG 1 cut(s) 252
Eco31I GGTCTC 1 cut(s) 135
Eco47I GGWCC 2 cut(s) 438, 828
Eco88I CYCGRG 1 cut(s) 1174
EcoRI GAATTC 1 cut(s) 1373
EcoRII CCWGG 3 cut(s) 495, 1061, 1130
EcoT14I CCWWGG 1 cut(s) 252
EcoT22I ATGCAT 1 cut(s) 479
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 7 cut(s) 256, 493, 522, 638, 827, 1081, 1370
FalI AAGNNNNNCTT 2 cut(s) 249, 281
FatI CATG 7 cut(s) 252, 489, 518, 634, 823, 1077, 1366
FblI GTMKAC 1 cut(s) 1274
FokI GGATG 4 cut(s) 103, 857, 1124, 1187
FspBI CTAG 3 cut(s) 537, 710, 1149
GlaI GCGC 2 cut(s) 239, 494
HaeIII GGCC 3 cut(s) 251, 629, 1255
HapII CCGG 3 cut(s) 227, 1270, 1502
HgaI GACGC 1 cut(s) 581
HhaI GCGC 2 cut(s) 240, 495
Hin1I GRCGYC 1 cut(s) 573
Hin1II CATG 7 cut(s) 256, 493, 522, 638, 827, 1081, 1370
Hin6I GCGC 2 cut(s) 238, 493
HinP1I GCGC 2 cut(s) 238, 493
HindIII AAGCTT 1 cut(s) 669
HinfI GANTC 4 cut(s) 317, 1015, 1084, 1427
HpaII CCGG 3 cut(s) 227, 1270, 1502
HphI GGTGA 2 cut(s) 896, 1366
Hpy166II GTNNAC 1 cut(s) 1275
Hpy188III TCNNGA 4 cut(s) 596, 635, 1176, 1424
Hpy8I GTNNAC 1 cut(s) 1275
Hpy99I CGWCG 1 cut(s) 958
HpyAV CCTTC 5 cut(s) 123, 130, 640, 708, 789
HpyCH4III ACNGT 4 cut(s) 184, 333, 442, 1095
HpyF10VI GCNNNNNNNGC 9 cut(s) 227, 459, 474, 519, 581, 677, 743, 968, 1328
HpyF3I CTNAG 2 cut(s) 1048, 1481
Hsp92I GRCGYC 1 cut(s) 573
Hsp92II CATG 7 cut(s) 256, 493, 522, 638, 827, 1081, 1370
HspAI GCGC 2 cut(s) 238, 493
KroI GCCGGC 1 cut(s) 226
KroNI GCCGGC 1 cut(s) 228
Kzo9I GATC 7 cut(s) 262, 322, 420, 663, 761, 914, 1007
Lsp1109I GCAGC 9 cut(s) 596, 733, 755, 949, 971, 1056, 1253, 1261, 1350
LweI GCATC 1 cut(s) 466
MaeI CTAG 3 cut(s) 537, 710, 1149
MaeIII GTNAC 1 cut(s) 333
MalI GATC 7 cut(s) 264, 324, 422, 665, 763, 916, 1009
MbiI CCGCTC 1 cut(s) 546
MboI GATC 7 cut(s) 262, 322, 420, 663, 761, 914, 1007
MflI RGATCY 2 cut(s) 663, 914
MhlI GDGCHC 3 cut(s) 344, 407, 894
MlyI GAGTC 2 cut(s) 326, 1093
MmeI TCCRAC 2 cut(s) 1176, 1267
Mph1103I ATGCAT 1 cut(s) 479
MroNI GCCGGC 1 cut(s) 226
MroXI GAANNNNTTC 1 cut(s) 1321
MseI TTAA 4 cut(s) 14, 578, 1401, 1454
MspA1I CMGCKG 3 cut(s) 746, 962, 1252
MspI CCGG 3 cut(s) 227, 1270, 1502
MspR9I CCNGG 4 cut(s) 497, 1063, 1132, 1503
Mva1269I GAATGC 3 cut(s) 455, 479, 515
MvaI CCWGG 3 cut(s) 497, 1063, 1132
MwoI GCNNNNNNNGC 9 cut(s) 227, 459, 474, 519, 581, 677, 743, 968, 1328
NaeI GCCGGC 1 cut(s) 228
NciI CCSGG 1 cut(s) 1503
NcoI CCATGG 1 cut(s) 252
NdeII GATC 7 cut(s) 262, 322, 420, 663, 761, 914, 1007
NgoMIV GCCGGC 1 cut(s) 226
NlaIII CATG 7 cut(s) 256, 493, 522, 638, 827, 1081, 1370
NlaIV GGNNCC 1 cut(s) 829
NsiI ATGCAT 1 cut(s) 479
NspI RCATGY 3 cut(s) 522, 1081, 1370
PaeI GCATGC 3 cut(s) 522, 1081, 1370
PagI TCATGA 1 cut(s) 634
PctI GAATGC 3 cut(s) 455, 479, 515
PdiI GCCGGC 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 1321
PfeI GAWTC 2 cut(s) 1015, 1427
PflMI CCANNNNNTGG 1 cut(s) 924
Ple19I CGATCG 1 cut(s) 325
PleI GAGTC 2 cut(s) 325, 1092
PpsI GAGTC 2 cut(s) 325, 1092
Psp6I CCWGG 3 cut(s) 495, 1061, 1130
PspGI CCWGG 3 cut(s) 495, 1061, 1130
PspN4I GGNNCC 1 cut(s) 829
PspPI GGNCC 2 cut(s) 438, 828
PstI CTGCAG 2 cut(s) 470, 745
PsuI RGATCY 2 cut(s) 663, 914
PvuI CGATCG 1 cut(s) 325
PvuII CAGCTG 2 cut(s) 746, 962
SaqAI TTAA 4 cut(s) 14, 578, 1401, 1454
Sau3AI GATC 7 cut(s) 262, 322, 420, 663, 761, 914, 1007
Sau96I GGNCC 2 cut(s) 438, 828
SchI GAGTC 2 cut(s) 326, 1093
ScrFI CCNGG 4 cut(s) 497, 1063, 1132, 1503
SduI GDGCHC 3 cut(s) 344, 407, 894
SfaNI GCATC 1 cut(s) 466
SfcI CTRYAG 3 cut(s) 466, 741, 802
SinI GGWCC 2 cut(s) 438, 828
SmlI CTYRAG 1 cut(s) 1326
SmoI CTYRAG 1 cut(s) 1326
SphI GCATGC 3 cut(s) 522, 1081, 1370
SspI AATATT 1 cut(s) 1399
SspMI CTAG 3 cut(s) 537, 710, 1149
StyD4I CCNGG 4 cut(s) 495, 1061, 1130, 1501
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 4 cut(s) 184, 333, 442, 1095
TaqI TCGA 4 cut(s) 325, 778, 937, 1224
TaqII GACCGA 1 cut(s) 1367
TauI GCSGC 5 cut(s) 211, 304, 525, 546, 1255
TfiI GAWTC 2 cut(s) 1015, 1427
Tru1I TTAA 4 cut(s) 14, 578, 1401, 1454
Tru9I TTAA 4 cut(s) 14, 578, 1401, 1454
TscAI CASTG 2 cut(s) 407, 745
TseI GCWGC 9 cut(s) 584, 743, 746, 959, 962, 1044, 1249, 1266, 1363
TspDTI ATGAA 7 cut(s) 105, 522, 623, 651, 999, 1011, 1016
TspRI CASTG 2 cut(s) 407, 745
Van91I CCANNNNNTGG 1 cut(s) 924
VpaK11BI GGWCC 2 cut(s) 438, 828
XapI RAATTY 5 cut(s) 200, 359, 384, 1373, 1404
XceI RCATGY 3 cut(s) 522, 1081, 1370
XmiI GTMKAC 1 cut(s) 1274
XmnI GAANNNNTTC 1 cut(s) 1321
XspI CTAG 3 cut(s) 537, 710, 1149
Zsp2I ATGCAT 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.