E3 ubiquitin-protein ligase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 362, 1296 |
| Acc36I | ACCTGC | 1 cut(s) | 1452 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 924 |
| AccBSI | CCGCTC | 1 cut(s) | 546 |
| AccI | GTMKAC | 1 cut(s) | 1274 |
| AclWI | GGATC | 3 cut(s) | 428, 658, 909 |
| AcoI | YGGCCR | 1 cut(s) | 1253 |
| AcsI | RAATTY | 5 cut(s) | 200, 359, 384, 1373, 1404 |
| AcyI | GRCGYC | 1 cut(s) | 573 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 924 |
| AgsI | TTSAA | 5 cut(s) | 692, 1107, 1343, 1386, 1431 |
| AjnI | CCWGG | 3 cut(s) | 495, 1061, 1130 |
| Alw21I | GWGCWC | 2 cut(s) | 344, 894 |
| Alw26I | GTCTC | 2 cut(s) | 135, 1419 |
| AlwI | GGATC | 3 cut(s) | 428, 658, 909 |
| Ama87I | CYCGRG | 1 cut(s) | 1174 |
| AoxI | GGCC | 3 cut(s) | 249, 627, 1253 |
| ApeKI | GCWGC | 9 cut(s) | 584, 743, 746, 959, 962, 1044, 1249, 1266, 1363 |
| ApoI | RAATTY | 5 cut(s) | 200, 359, 384, 1373, 1404 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1321 |
| AspLEI | GCGC | 2 cut(s) | 240, 495 |
| AspS9I | GGNCC | 2 cut(s) | 438, 828 |
| AsuC2I | CCSGG | 1 cut(s) | 1503 |
| AsuHPI | GGTGA | 2 cut(s) | 896, 1366 |
| AvaI | CYCGRG | 1 cut(s) | 1174 |
| AvaII | GGWCC | 2 cut(s) | 438, 828 |
| BaeGI | GKGCMC | 1 cut(s) | 407 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1149, 1181 |
| BauI | CACGAG | 1 cut(s) | 245 |
| BbsI | GAAGAC | 2 cut(s) | 334, 870 |
| Bbv12I | GWGCWC | 2 cut(s) | 344, 894 |
| BbvI | GCAGC | 9 cut(s) | 596, 733, 755, 949, 971, 1056, 1253, 1261, 1350 |
| BccI | CCATC | 3 cut(s) | 439, 854, 918 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 168, 202 |
| BciT130I | CCWGG | 3 cut(s) | 497, 1063, 1132 |
| BcnI | CCSGG | 1 cut(s) | 1503 |
| BcoDI | GTCTC | 2 cut(s) | 135, 1419 |
| BfaI | CTAG | 3 cut(s) | 537, 710, 1149 |
| BfmI | CTRYAG | 3 cut(s) | 466, 741, 802 |
| BfuAI | ACCTGC | 1 cut(s) | 1452 |
| Bme1390I | CCNGG | 4 cut(s) | 497, 1063, 1132, 1503 |
| Bme18I | GGWCC | 2 cut(s) | 438, 828 |
| BmeT110I | CYCGRG | 1 cut(s) | 1174 |
| BmgT120I | GGNCC | 2 cut(s) | 438, 828 |
| BmiI | GGNNCC | 1 cut(s) | 829 |
| BmrFI | CCNGG | 4 cut(s) | 497, 1063, 1132, 1503 |
| BmsI | GCATC | 1 cut(s) | 466 |
| BpiI | GAAGAC | 2 cut(s) | 334, 870 |
| BpuEI | CTTGAG | 1 cut(s) | 1311 |
| BpuMI | CCSGG | 1 cut(s) | 1503 |
| BsaHI | GRCGYC | 1 cut(s) | 573 |
| BsaI | GGTCTC | 1 cut(s) | 135 |
| BsaJI | CCNNGG | 4 cut(s) | 252, 496, 702, 1062 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 919, 949 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 924 |
| Bse118I | RCCGGY | 2 cut(s) | 226, 1269 |
| Bse1I | ACTGG | 1 cut(s) | 400 |
| Bse3DI | GCAATG | 3 cut(s) | 228, 675, 1123 |
| BseBI | CCWGG | 3 cut(s) | 497, 1063, 1132 |
| BseDI | CCNNGG | 4 cut(s) | 252, 496, 702, 1062 |
| BseGI | GGATG | 4 cut(s) | 116, 850, 1137, 1200 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 924 |
| BseMI | GCAATG | 3 cut(s) | 228, 675, 1123 |
| BseMII | CTCAG | 1 cut(s) | 1062 |
| BseNI | ACTGG | 1 cut(s) | 400 |
| BseRI | GAGGAG | 4 cut(s) | 121, 329, 772, 945 |
| BseSI | GKGCMC | 1 cut(s) | 407 |
| BseXI | GCAGC | 9 cut(s) | 596, 733, 755, 949, 971, 1056, 1253, 1261, 1350 |
| Bsh1285I | CGRYCG | 1 cut(s) | 325 |
| BshFI | GGCC | 3 cut(s) | 251, 629, 1255 |
| BsiEI | CGRYCG | 1 cut(s) | 325 |
| BsiHKAI | GWGCWC | 2 cut(s) | 344, 894 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1174 |
| BsiSI | CCGG | 3 cut(s) | 227, 1270, 1502 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 924 |
| BsmAI | GTCTC | 2 cut(s) | 135, 1419 |
| BsmI | GAATGC | 3 cut(s) | 455, 479, 515 |
| BsnI | GGCC | 3 cut(s) | 251, 629, 1255 |
| Bso31I | GGTCTC | 1 cut(s) | 135 |
| BsoBI | CYCGRG | 1 cut(s) | 1174 |
| Bsp1286I | GDGCHC | 3 cut(s) | 344, 407, 894 |
| Bsp143I | GATC | 7 cut(s) | 262, 322, 420, 663, 761, 914, 1007 |
| Bsp19I | CCATGG | 1 cut(s) | 252 |
| BspANI | GGCC | 3 cut(s) | 251, 629, 1255 |
| BspCNI | CTCAG | 1 cut(s) | 1061 |
| BspHI | TCATGA | 1 cut(s) | 634 |
| BspLI | GGNNCC | 1 cut(s) | 829 |
| BspMAI | CTGCAG | 2 cut(s) | 470, 745 |
| BspMI | ACCTGC | 1 cut(s) | 1452 |
| BspPI | GGATC | 3 cut(s) | 428, 658, 909 |
| BspTNI | GGTCTC | 1 cut(s) | 135 |
| BsrBI | CCGCTC | 1 cut(s) | 546 |
| BsrDI | GCAATG | 3 cut(s) | 228, 675, 1123 |
| BsrFI | RCCGGY | 2 cut(s) | 226, 1269 |
| BsrI | ACTGG | 1 cut(s) | 400 |
| BssAI | RCCGGY | 2 cut(s) | 226, 1269 |
| BssECI | CCNNGG | 4 cut(s) | 252, 496, 702, 1062 |
| BssMI | GATC | 7 cut(s) | 262, 322, 420, 663, 761, 914, 1007 |
| BssNI | GRCGYC | 1 cut(s) | 573 |
| BssSI | CACGAG | 1 cut(s) | 245 |
| BssT1I | CCWWGG | 1 cut(s) | 252 |
| Bst2BI | CACGAG | 1 cut(s) | 245 |
| Bst2UI | CCWGG | 3 cut(s) | 497, 1063, 1132 |
| Bst4CI | ACNGT | 4 cut(s) | 184, 333, 442, 1095 |
| Bst6I | CTCTTC | 4 cut(s) | 306, 342, 612, 636 |
| BstACI | GRCGYC | 1 cut(s) | 573 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 474 |
| BstC8I | GCNNGC | 6 cut(s) | 228, 455, 520, 652, 1079, 1368 |
| BstDEI | CTNAG | 2 cut(s) | 1048, 1481 |
| BstDSI | CCRYGG | 1 cut(s) | 252 |
| BstF5I | GGATG | 4 cut(s) | 116, 850, 1137, 1200 |
| BstHHI | GCGC | 2 cut(s) | 240, 495 |
| BstKTI | GATC | 7 cut(s) | 265, 325, 423, 666, 764, 917, 1010 |
| BstMAI | GTCTC | 2 cut(s) | 135, 1419 |
| BstMBI | GATC | 7 cut(s) | 262, 322, 420, 663, 761, 914, 1007 |
| BstMCI | CGRYCG | 1 cut(s) | 325 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 227, 459, 474, 519, 581, 677, 743, 968, 1328 |
| BstNI | CCWGG | 3 cut(s) | 497, 1063, 1132 |
| BstNSI | RCATGY | 3 cut(s) | 522, 1081, 1370 |
| BstSCI | CCNGG | 4 cut(s) | 495, 1061, 1130, 1501 |
| BstSFI | CTRYAG | 3 cut(s) | 466, 741, 802 |
| BstSLI | GKGCMC | 1 cut(s) | 407 |
| BstV1I | GCAGC | 9 cut(s) | 596, 733, 755, 949, 971, 1056, 1253, 1261, 1350 |
| BstV2I | GAAGAC | 2 cut(s) | 334, 870 |
| BstX2I | RGATCY | 2 cut(s) | 663, 914 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 496 |
| BstYI | RGATCY | 2 cut(s) | 663, 914 |
| BsuRI | GGCC | 3 cut(s) | 251, 629, 1255 |
| BtgI | CCRYGG | 1 cut(s) | 252 |
| BtgZI | GCGATG | 1 cut(s) | 443 |
| BtsCI | GGATG | 4 cut(s) | 116, 850, 1137, 1200 |
| BtsI | GCAGTG | 1 cut(s) | 738 |
| BtsIMutI | CAGTG | 2 cut(s) | 407, 738 |
| BveI | ACCTGC | 1 cut(s) | 1452 |
| Cac8I | GCNNGC | 6 cut(s) | 228, 455, 520, 652, 1079, 1368 |
| CciI | TCATGA | 1 cut(s) | 634 |
| CfoI | GCGC | 2 cut(s) | 240, 495 |
| Cfr10I | RCCGGY | 2 cut(s) | 226, 1269 |
| Cfr13I | GGNCC | 2 cut(s) | 438, 828 |
| CseI | GACGC | 1 cut(s) | 581 |
| CviAII | CATG | 7 cut(s) | 253, 490, 519, 635, 824, 1078, 1367 |
| DdeI | CTNAG | 2 cut(s) | 1048, 1481 |
| DpnI | GATC | 7 cut(s) | 264, 324, 422, 665, 763, 916, 1009 |
| DpnII | GATC | 7 cut(s) | 262, 322, 420, 663, 761, 914, 1007 |
| DraI | TTTAAA | 1 cut(s) | 1455 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 362, 1296 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 362, 1296 |
| EaeI | YGGCCR | 1 cut(s) | 1253 |
| Eam1104I | CTCTTC | 4 cut(s) | 306, 342, 612, 636 |
| EarI | CTCTTC | 4 cut(s) | 306, 342, 612, 636 |
| EciI | GGCGGA | 3 cut(s) | 25, 195, 1130 |
| Eco130I | CCWWGG | 1 cut(s) | 252 |
| Eco31I | GGTCTC | 1 cut(s) | 135 |
| Eco47I | GGWCC | 2 cut(s) | 438, 828 |
| Eco88I | CYCGRG | 1 cut(s) | 1174 |
| EcoRI | GAATTC | 1 cut(s) | 1373 |
| EcoRII | CCWGG | 3 cut(s) | 495, 1061, 1130 |
| EcoT14I | CCWWGG | 1 cut(s) | 252 |
| EcoT22I | ATGCAT | 1 cut(s) | 479 |
| ErhI | CCWWGG | 1 cut(s) | 252 |
| FaeI | CATG | 7 cut(s) | 256, 493, 522, 638, 827, 1081, 1370 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 249, 281 |
| FatI | CATG | 7 cut(s) | 252, 489, 518, 634, 823, 1077, 1366 |
| FblI | GTMKAC | 1 cut(s) | 1274 |
| FokI | GGATG | 4 cut(s) | 103, 857, 1124, 1187 |
| FspBI | CTAG | 3 cut(s) | 537, 710, 1149 |
| GlaI | GCGC | 2 cut(s) | 239, 494 |
| HaeIII | GGCC | 3 cut(s) | 251, 629, 1255 |
| HapII | CCGG | 3 cut(s) | 227, 1270, 1502 |
| HgaI | GACGC | 1 cut(s) | 581 |
| HhaI | GCGC | 2 cut(s) | 240, 495 |
| Hin1I | GRCGYC | 1 cut(s) | 573 |
| Hin1II | CATG | 7 cut(s) | 256, 493, 522, 638, 827, 1081, 1370 |
| Hin6I | GCGC | 2 cut(s) | 238, 493 |
| HinP1I | GCGC | 2 cut(s) | 238, 493 |
| HindIII | AAGCTT | 1 cut(s) | 669 |
| HinfI | GANTC | 4 cut(s) | 317, 1015, 1084, 1427 |
| HpaII | CCGG | 3 cut(s) | 227, 1270, 1502 |
| HphI | GGTGA | 2 cut(s) | 896, 1366 |
| Hpy166II | GTNNAC | 1 cut(s) | 1275 |
| Hpy188III | TCNNGA | 4 cut(s) | 596, 635, 1176, 1424 |
| Hpy8I | GTNNAC | 1 cut(s) | 1275 |
| Hpy99I | CGWCG | 1 cut(s) | 958 |
| HpyAV | CCTTC | 5 cut(s) | 123, 130, 640, 708, 789 |
| HpyCH4III | ACNGT | 4 cut(s) | 184, 333, 442, 1095 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 227, 459, 474, 519, 581, 677, 743, 968, 1328 |
| HpyF3I | CTNAG | 2 cut(s) | 1048, 1481 |
| Hsp92I | GRCGYC | 1 cut(s) | 573 |
| Hsp92II | CATG | 7 cut(s) | 256, 493, 522, 638, 827, 1081, 1370 |
| HspAI | GCGC | 2 cut(s) | 238, 493 |
| KroI | GCCGGC | 1 cut(s) | 226 |
| KroNI | GCCGGC | 1 cut(s) | 228 |
| Kzo9I | GATC | 7 cut(s) | 262, 322, 420, 663, 761, 914, 1007 |
| Lsp1109I | GCAGC | 9 cut(s) | 596, 733, 755, 949, 971, 1056, 1253, 1261, 1350 |
| LweI | GCATC | 1 cut(s) | 466 |
| MaeI | CTAG | 3 cut(s) | 537, 710, 1149 |
| MaeIII | GTNAC | 1 cut(s) | 333 |
| MalI | GATC | 7 cut(s) | 264, 324, 422, 665, 763, 916, 1009 |
| MbiI | CCGCTC | 1 cut(s) | 546 |
| MboI | GATC | 7 cut(s) | 262, 322, 420, 663, 761, 914, 1007 |
| MflI | RGATCY | 2 cut(s) | 663, 914 |
| MhlI | GDGCHC | 3 cut(s) | 344, 407, 894 |
| MlyI | GAGTC | 2 cut(s) | 326, 1093 |
| MmeI | TCCRAC | 2 cut(s) | 1176, 1267 |
| Mph1103I | ATGCAT | 1 cut(s) | 479 |
| MroNI | GCCGGC | 1 cut(s) | 226 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1321 |
| MseI | TTAA | 4 cut(s) | 14, 578, 1401, 1454 |
| MspA1I | CMGCKG | 3 cut(s) | 746, 962, 1252 |
| MspI | CCGG | 3 cut(s) | 227, 1270, 1502 |
| MspR9I | CCNGG | 4 cut(s) | 497, 1063, 1132, 1503 |
| Mva1269I | GAATGC | 3 cut(s) | 455, 479, 515 |
| MvaI | CCWGG | 3 cut(s) | 497, 1063, 1132 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 227, 459, 474, 519, 581, 677, 743, 968, 1328 |
| NaeI | GCCGGC | 1 cut(s) | 228 |
| NciI | CCSGG | 1 cut(s) | 1503 |
| NcoI | CCATGG | 1 cut(s) | 252 |
| NdeII | GATC | 7 cut(s) | 262, 322, 420, 663, 761, 914, 1007 |
| NgoMIV | GCCGGC | 1 cut(s) | 226 |
| NlaIII | CATG | 7 cut(s) | 256, 493, 522, 638, 827, 1081, 1370 |
| NlaIV | GGNNCC | 1 cut(s) | 829 |
| NsiI | ATGCAT | 1 cut(s) | 479 |
| NspI | RCATGY | 3 cut(s) | 522, 1081, 1370 |
| PaeI | GCATGC | 3 cut(s) | 522, 1081, 1370 |
| PagI | TCATGA | 1 cut(s) | 634 |
| PctI | GAATGC | 3 cut(s) | 455, 479, 515 |
| PdiI | GCCGGC | 1 cut(s) | 228 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1321 |
| PfeI | GAWTC | 2 cut(s) | 1015, 1427 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 924 |
| Ple19I | CGATCG | 1 cut(s) | 325 |
| PleI | GAGTC | 2 cut(s) | 325, 1092 |
| PpsI | GAGTC | 2 cut(s) | 325, 1092 |
| Psp6I | CCWGG | 3 cut(s) | 495, 1061, 1130 |
| PspGI | CCWGG | 3 cut(s) | 495, 1061, 1130 |
| PspN4I | GGNNCC | 1 cut(s) | 829 |
| PspPI | GGNCC | 2 cut(s) | 438, 828 |
| PstI | CTGCAG | 2 cut(s) | 470, 745 |
| PsuI | RGATCY | 2 cut(s) | 663, 914 |
| PvuI | CGATCG | 1 cut(s) | 325 |
| PvuII | CAGCTG | 2 cut(s) | 746, 962 |
| SaqAI | TTAA | 4 cut(s) | 14, 578, 1401, 1454 |
| Sau3AI | GATC | 7 cut(s) | 262, 322, 420, 663, 761, 914, 1007 |
| Sau96I | GGNCC | 2 cut(s) | 438, 828 |
| SchI | GAGTC | 2 cut(s) | 326, 1093 |
| ScrFI | CCNGG | 4 cut(s) | 497, 1063, 1132, 1503 |
| SduI | GDGCHC | 3 cut(s) | 344, 407, 894 |
| SfaNI | GCATC | 1 cut(s) | 466 |
| SfcI | CTRYAG | 3 cut(s) | 466, 741, 802 |
| SinI | GGWCC | 2 cut(s) | 438, 828 |
| SmlI | CTYRAG | 1 cut(s) | 1326 |
| SmoI | CTYRAG | 1 cut(s) | 1326 |
| SphI | GCATGC | 3 cut(s) | 522, 1081, 1370 |
| SspI | AATATT | 1 cut(s) | 1399 |
| SspMI | CTAG | 3 cut(s) | 537, 710, 1149 |
| StyD4I | CCNGG | 4 cut(s) | 495, 1061, 1130, 1501 |
| StyI | CCWWGG | 1 cut(s) | 252 |
| TaaI | ACNGT | 4 cut(s) | 184, 333, 442, 1095 |
| TaqI | TCGA | 4 cut(s) | 325, 778, 937, 1224 |
| TaqII | GACCGA | 1 cut(s) | 1367 |
| TauI | GCSGC | 5 cut(s) | 211, 304, 525, 546, 1255 |
| TfiI | GAWTC | 2 cut(s) | 1015, 1427 |
| Tru1I | TTAA | 4 cut(s) | 14, 578, 1401, 1454 |
| Tru9I | TTAA | 4 cut(s) | 14, 578, 1401, 1454 |
| TscAI | CASTG | 2 cut(s) | 407, 745 |
| TseI | GCWGC | 9 cut(s) | 584, 743, 746, 959, 962, 1044, 1249, 1266, 1363 |
| TspDTI | ATGAA | 7 cut(s) | 105, 522, 623, 651, 999, 1011, 1016 |
| TspRI | CASTG | 2 cut(s) | 407, 745 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 924 |
| VpaK11BI | GGWCC | 2 cut(s) | 438, 828 |
| XapI | RAATTY | 5 cut(s) | 200, 359, 384, 1373, 1404 |
| XceI | RCATGY | 3 cut(s) | 522, 1081, 1370 |
| XmiI | GTMKAC | 1 cut(s) | 1274 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1321 |
| XspI | CTAG | 3 cut(s) | 537, 710, 1149 |
| Zsp2I | ATGCAT | 1 cut(s) | 479 |