FvH4_3g08840

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
5159236 .. 5164540
5305 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08840.t4

Sequence Viewer

Length: 1275 bp
ATGCCGGCGCAGAAGCGTGGCTTCGAGGAGGCCGTCGAGGACGGTGATGATCCTGCTGCGAAACTCCACGAGAACGGCCACGAGGAGCCGCCGGAAGAAGAAGAGTCCGATCGGAGCCGGAGCCCGGAGCCGAGTGAGGACGAGAAGGACGACGAGAAAGACGAAAGAACAGTGATGGAATGCCTGCACCGCTTCTGCAGGGAATGCATTGACAAGTCCATGCGGCTTGGGAACAATGAATGCCCTGCATGCCGCACACATTGTGCGAGTCGTCGCTCTTTGAGAGATGACCCAAAGTATGATGCCTTAATTGCAGCTATATATCCAGATATTGACAAGTATGAGGAAGAGGAATTAGCTTTTCATGAAGAAGAGAAGGCTCGCAATAAGCAGATCCAAGCTTCCATTGCCCAGACATTTCGACGACAATCCGAAGCACTTGGTAGGAAGCGAACTACAGCAAAAGCCACTGCCGCTGCATTTATGAGGAAATCCCAAGGTAACTACAAAAATTTGAGGCGGAGAAGGAATAATAAAAATGCTGTTGAAATTCAAGGATCTGATGATAATGAGGAGGCAAATGGTAATGATGGAGGGAAAGATTCATCTTCTGATGAGCGCACAGAACCAAGACCAAAAAGACCCAAAAGATGGACAGGAGCTCGATATTATCAGCGTTCACCAGCAACTGCGAATGCAGATGGTGATTATGAAAATGATTATGAGGTAAATAGAGAAGTTATGGGTTCATCTGTGGGGTTTGTTGGCAGTCCAGAAAGGCTTGCATGGGGTAAAGGTGGCTTGCGTAGTCATACAAGATATGGAAGTTCTAGTGGTGCCAATGGTAAGAATGCCAGGAGCCGCATTTCTAAGTTGGTGGATTATCTCCGCAACTTGGAAGCTAATGATAAAGGGTTGGATATCCACCTCCTACTGGTTTCTTTTGATGAACAAAGAATACCTAGTTTGCAGAGGCGGTATCTTTGCTGCAGGCCCACCCTGTCAGTTGGACAACTATGTCAGTATGTTGCTGAGCAAACTGCACTGCAACCTGATGAAGTGGAAATATACTTAATAAAGGAAGTACAAGCCAAAGTTAGCCCATCAGACCCTACAGATGCTCTGGTTTCTACTTCTGGTGTTTTAGATTCAAGCAATAACACACTTCTTCTGTTAAGAGACGATGAATCATTGGCAGAAGTTCAAGCGCGTCATCTCACTCGTGGCCATCTGCTTTTGGCATATCAGAAGAAGTGGAACTTAAACCGTGGCTGA

Protein Analysis

425

Amino Acids

47.98

Weight (kDa)

5.78

Isoelectric Point (pI)

66.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_2 PF13923 69 - 109 9.4e-12 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 69 - 110 9.1e-08 Ring finger domain
zf-C3HC4 PF00097 70 - 109 6.8e-10 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1017
AccB1I GGYRCC 1 cut(s) 836
AccB7I CCANNNNNTGG 1 cut(s) 651
AccII CGCG 1 cut(s) 1210
AciI CCGC 9 cut(s) 89, 190, 223, 253, 474, 520, 862, 889, 976
AclWI GGATC 3 cut(s) 44, 388, 565
AcoI YGGCCR 2 cut(s) 76, 1225
AcsI RAATTY 2 cut(s) 511, 549
AdeI CACNNNGTG 1 cut(s) 263
AfaI GTAC 1 cut(s) 1086
AfiI CCNNNNNNNGG 4 cut(s) 124, 651, 895, 934
AgsI TTSAA 4 cut(s) 548, 554, 1152, 1205
AjnI CCWGG 1 cut(s) 854
AluBI AGCT 5 cut(s) 317, 359, 401, 662, 902
AluI AGCT 5 cut(s) 317, 359, 401, 662, 902
Alw21I GWGCWC 1 cut(s) 664
Alw26I GTCTC 1 cut(s) 1173
AlwI GGATC 3 cut(s) 44, 388, 565
AlwNI CAGNNNCTG 1 cut(s) 689
AoxI GGCC 4 cut(s) 30, 76, 992, 1225
ApeKI GCWGC 4 cut(s) 56, 314, 476, 987
ApoI RAATTY 2 cut(s) 511, 549
AspLEI GCGC 3 cut(s) 10, 621, 1210
AspS9I GGNCC 1 cut(s) 993
AsuC2I CCSGG 1 cut(s) 125
AsuHPI GGTGA 3 cut(s) 56, 672, 716
BalI TGGCCA 1 cut(s) 1227
BanI GGYRCC 1 cut(s) 836
BanII GRGCYC 2 cut(s) 125, 664
BauI CACGAG 3 cut(s) 68, 80, 1221
Bbv12I GWGCWC 1 cut(s) 664
BbvI GCAGC 4 cut(s) 43, 326, 463, 974
BccI CCATC 6 cut(s) 169, 584, 645, 695, 1111, 1236
BceAI ACGGC 2 cut(s) 17, 91
BciT130I CCWGG 1 cut(s) 856
BcnI CCSGG 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 1173
BfaI CTAG 2 cut(s) 831, 963
BfmI CTRYAG 4 cut(s) 196, 456, 988, 1113
BisI GCNGC 9 cut(s) 57, 89, 224, 253, 315, 474, 477, 862, 988
BlpI GCTNAGC 1 cut(s) 1032
BlsI GCNGC 9 cut(s) 58, 90, 225, 254, 316, 475, 478, 863, 989
Bme1390I CCNGG 2 cut(s) 125, 856
BmgT120I GGNCC 1 cut(s) 993
BmiI GGNNCC 6 cut(s) 87, 116, 122, 129, 838, 860
BmrFI CCNGG 2 cut(s) 125, 856
BmsI GCATC 2 cut(s) 292, 1108
Bpu1102I GCTNAGC 1 cut(s) 1032
BpuMI CCSGG 1 cut(s) 125
BsaJI CCNNGG 2 cut(s) 496, 1267
Bsc4I CCNNNNNNNGG 4 cut(s) 124, 651, 895, 934
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 939
Bse3DI GCAATG 1 cut(s) 405
BseBI CCWGG 1 cut(s) 856
BseDI CCNNGG 2 cut(s) 496, 1267
BseLI CCNNNNNNNGG 4 cut(s) 124, 651, 895, 934
BseMI GCAATG 1 cut(s) 405
BseMII CTCAG 1 cut(s) 1023
BseNI ACTGG 1 cut(s) 939
BseRI GAGGAG 3 cut(s) 41, 98, 587
BseXI GCAGC 4 cut(s) 43, 326, 463, 974
BsgI GTGCAG 2 cut(s) 170, 1026
Bsh1236I CGCG 1 cut(s) 1210
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 4 cut(s) 32, 78, 994, 1227
BshNI GGYRCC 1 cut(s) 836
BsiEI CGRYCG 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 664
BsiSI CCGG 4 cut(s) 5, 92, 118, 125
BslI CCNNNNNNNGG 4 cut(s) 124, 651, 895, 934
BsmAI GTCTC 1 cut(s) 1173
BsmBI CGTCTC 1 cut(s) 1173
BsmI GAATGC 5 cut(s) 185, 209, 245, 700, 856
BsnI GGCC 4 cut(s) 32, 78, 994, 1227
Bsp1286I GDGCHC 2 cut(s) 125, 664
Bsp143I GATC 4 cut(s) 49, 109, 393, 557
Bsp1720I GCTNAGC 1 cut(s) 1032
BspACI CCGC 9 cut(s) 89, 190, 223, 253, 474, 520, 862, 889, 976
BspANI GGCC 4 cut(s) 32, 78, 994, 1227
BspCNI CTCAG 1 cut(s) 1024
BspFNI CGCG 1 cut(s) 1210
BspHI TCATGA 1 cut(s) 364
BspLI GGNNCC 6 cut(s) 87, 116, 122, 129, 838, 860
BspMAI CTGCAG 2 cut(s) 200, 992
BspPI GGATC 3 cut(s) 44, 388, 565
BspT107I GGYRCC 1 cut(s) 836
BsrDI GCAATG 1 cut(s) 405
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 1 cut(s) 939
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 2 cut(s) 496, 1267
BssMI GATC 4 cut(s) 49, 109, 393, 557
BssSI CACGAG 3 cut(s) 68, 80, 1221
BssT1I CCWWGG 1 cut(s) 496
Bst2BI CACGAG 3 cut(s) 68, 80, 1221
Bst2UI CCWGG 1 cut(s) 856
Bst4CI ACNGT 3 cut(s) 44, 172, 1268
Bst6I CTCTTC 3 cut(s) 96, 342, 366
BstAPI GCANNNNNTGC 1 cut(s) 204
BstC8I GCNNGC 7 cut(s) 6, 185, 250, 382, 783, 803, 992
BstDEI CTNAG 2 cut(s) 870, 1032
BstDSI CCRYGG 1 cut(s) 1267
BstFNI CGCG 1 cut(s) 1210
BstHHI GCGC 3 cut(s) 10, 621, 1210
BstKTI GATC 4 cut(s) 52, 112, 396, 560
BstMAI GTCTC 1 cut(s) 1173
BstMBI GATC 4 cut(s) 49, 109, 393, 557
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 6 cut(s) 189, 204, 249, 311, 407, 473
BstNI CCWGG 1 cut(s) 856
BstNSI RCATGY 1 cut(s) 252
BstSCI CCNGG 2 cut(s) 123, 854
BstSFI CTRYAG 4 cut(s) 196, 456, 988, 1113
BstUI CGCG 1 cut(s) 1210
BstV1I GCAGC 4 cut(s) 43, 326, 463, 974
BstX2I RGATCY 2 cut(s) 393, 557
BstYI RGATCY 2 cut(s) 393, 557
BsuRI GGCC 4 cut(s) 32, 78, 994, 1227
BtgI CCRYGG 1 cut(s) 1267
BtsI GCAGTG 2 cut(s) 468, 1043
BtsIMutI CAGTG 3 cut(s) 177, 468, 1043
Cac8I GCNNGC 7 cut(s) 6, 185, 250, 382, 783, 803, 992
CaiI CAGNNNCTG 1 cut(s) 689
CciI TCATGA 1 cut(s) 364
CfoI GCGC 3 cut(s) 10, 621, 1210
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 1 cut(s) 993
CseI GACGC 1 cut(s) 1199
Csp6I GTAC 1 cut(s) 1085
CviAII CATG 4 cut(s) 220, 249, 365, 786
CviQI GTAC 1 cut(s) 1085
DdeI CTNAG 2 cut(s) 870, 1032
DpnI GATC 4 cut(s) 51, 111, 395, 559
DpnII GATC 4 cut(s) 49, 109, 393, 557
DraIII CACNNNGTG 1 cut(s) 263
DrdI GACNNNNNNGTC 1 cut(s) 1017
DseDI GACNNNNNNGTC 1 cut(s) 1017
EaeI YGGCCR 2 cut(s) 76, 1225
Eam1104I CTCTTC 3 cut(s) 96, 342, 366
EarI CTCTTC 3 cut(s) 96, 342, 366
EciI GGCGGA 1 cut(s) 535
Ecl136II GAGCTC 1 cut(s) 662
Eco130I CCWWGG 1 cut(s) 496
Eco24I GRGCYC 2 cut(s) 125, 664
Eco32I GATATC 1 cut(s) 922
Eco53kI GAGCTC 1 cut(s) 662
EcoICRI GAGCTC 1 cut(s) 662
EcoRII CCWGG 1 cut(s) 854
EcoRV GATATC 1 cut(s) 922
EcoT14I CCWWGG 1 cut(s) 496
EcoT22I ATGCAT 1 cut(s) 209
EcoT38I GRGCYC 2 cut(s) 125, 664
ErhI CCWWGG 1 cut(s) 496
Esp3I CGTCTC 1 cut(s) 1173
FaeI CATG 4 cut(s) 223, 252, 368, 789
FalI AAGNNNNNCTT 2 cut(s) 37, 1244
FatI CATG 4 cut(s) 219, 248, 364, 785
Fnu4HI GCNGC 9 cut(s) 57, 89, 224, 253, 315, 474, 477, 862, 988
FriOI GRGCYC 2 cut(s) 125, 664
Fsp4HI GCNGC 9 cut(s) 57, 89, 224, 253, 315, 474, 477, 862, 988
FspBI CTAG 2 cut(s) 831, 963
GlaI GCGC 3 cut(s) 9, 620, 1209
GluI GCNGC 9 cut(s) 57, 89, 224, 253, 315, 474, 477, 862, 988
HaeIII GGCC 4 cut(s) 32, 78, 994, 1227
HapII CCGG 4 cut(s) 5, 92, 118, 125
HgaI GACGC 1 cut(s) 1199
HhaI GCGC 3 cut(s) 10, 621, 1210
Hin1II CATG 4 cut(s) 223, 252, 368, 789
Hin6I GCGC 3 cut(s) 8, 619, 1208
HinP1I GCGC 3 cut(s) 8, 619, 1208
HindIII AAGCTT 1 cut(s) 399
HinfI GANTC 5 cut(s) 104, 268, 602, 1148, 1187
HpaII CCGG 4 cut(s) 5, 92, 118, 125
HphI GGTGA 3 cut(s) 56, 672, 716
Hpy166II GTNNAC 1 cut(s) 680
Hpy188I TCNGA 7 cut(s) 109, 114, 433, 562, 613, 1108, 1248
Hpy188III TCNNGA 3 cut(s) 326, 365, 773
Hpy8I GTNNAC 1 cut(s) 680
Hpy99I CGWCG 4 cut(s) 38, 155, 276, 426
HpyAV CCTTC 3 cut(s) 139, 370, 519
HpyCH4III ACNGT 3 cut(s) 44, 172, 1268
HpyF10VI GCNNNNNNNGC 6 cut(s) 189, 204, 249, 311, 407, 473
HpyF3I CTNAG 2 cut(s) 870, 1032
Hsp92II CATG 4 cut(s) 223, 252, 368, 789
HspAI GCGC 3 cut(s) 8, 619, 1208
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 4 cut(s) 49, 109, 393, 557
LmnI GCTCC 6 cut(s) 85, 114, 120, 127, 659, 858
Lsp1109I GCAGC 4 cut(s) 43, 326, 463, 974
LweI GCATC 2 cut(s) 292, 1108
MaeI CTAG 2 cut(s) 831, 963
MaeIII GTNAC 1 cut(s) 500
MalI GATC 4 cut(s) 51, 111, 395, 559
MboI GATC 4 cut(s) 49, 109, 393, 557
MboII GAAGA 9 cut(s) 107, 110, 113, 359, 380, 383, 600, 1160, 1261
MflI RGATCY 2 cut(s) 393, 557
MhlI GDGCHC 2 cut(s) 125, 664
MlsI TGGCCA 1 cut(s) 1227
MluCI AATT 4 cut(s) 309, 353, 511, 549
MluNI TGGCCA 1 cut(s) 1227
MlyI GAGTC 2 cut(s) 113, 277
MmeI TCCRAC 2 cut(s) 897, 988
Mox20I TGGCCA 1 cut(s) 1227
Mph1103I ATGCAT 1 cut(s) 209
MroNI GCCGGC 1 cut(s) 4
MscI TGGCCA 1 cut(s) 1227
MseI TTAA 4 cut(s) 308, 1073, 1175, 1262
Msp20I TGGCCA 1 cut(s) 1227
MspA1I CMGCKG 1 cut(s) 476
MspI CCGG 4 cut(s) 5, 92, 118, 125
MspR9I CCNGG 2 cut(s) 125, 856
Mva1269I GAATGC 5 cut(s) 185, 209, 245, 700, 856
MvaI CCWGG 1 cut(s) 856
MvnI CGCG 1 cut(s) 1210
MwoI GCNNNNNNNGC 6 cut(s) 189, 204, 249, 311, 407, 473
NaeI GCCGGC 1 cut(s) 6
NciI CCSGG 1 cut(s) 125
NdeII GATC 4 cut(s) 49, 109, 393, 557
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 4 cut(s) 223, 252, 368, 789
NlaIV GGNNCC 6 cut(s) 87, 116, 122, 129, 838, 860
NmeAIII GCCGAG 1 cut(s) 156
NsiI ATGCAT 1 cut(s) 209
NspI RCATGY 1 cut(s) 252
PaeI GCATGC 1 cut(s) 252
PagI TCATGA 1 cut(s) 364
PcsI WCGNNNNNNNCGW 3 cut(s) 30, 147, 159
PctI GAATGC 5 cut(s) 185, 209, 245, 700, 856
PdiI GCCGGC 1 cut(s) 6
PfeI GAWTC 3 cut(s) 602, 1148, 1187
PflMI CCANNNNNTGG 1 cut(s) 651
PkrI GCNGC 9 cut(s) 58, 90, 225, 254, 316, 475, 478, 863, 989
Ple19I CGATCG 1 cut(s) 112
PleI GAGTC 2 cut(s) 112, 276
PpsI GAGTC 2 cut(s) 112, 276
Psp124BI GAGCTC 1 cut(s) 664
Psp6I CCWGG 1 cut(s) 854
PspGI CCWGG 1 cut(s) 854
PspN4I GGNNCC 6 cut(s) 87, 116, 122, 129, 838, 860
PspPI GGNCC 1 cut(s) 993
PsrI GAACNNNNNNTAC 2 cut(s) 942, 974
PstI CTGCAG 2 cut(s) 200, 992
PstNI CAGNNNCTG 1 cut(s) 689
PsuI RGATCY 2 cut(s) 393, 557
PvuI CGATCG 1 cut(s) 112
RsaI GTAC 1 cut(s) 1086
RsaNI GTAC 1 cut(s) 1085
SacI GAGCTC 1 cut(s) 664
SaqAI TTAA 4 cut(s) 308, 1073, 1175, 1262
SatI GCNGC 9 cut(s) 57, 89, 224, 253, 315, 474, 477, 862, 988
Sau3AI GATC 4 cut(s) 49, 109, 393, 557
Sau96I GGNCC 1 cut(s) 993
SchI GAGTC 2 cut(s) 113, 277
ScrFI CCNGG 2 cut(s) 125, 856
SduI GDGCHC 2 cut(s) 125, 664
SfaNI GCATC 2 cut(s) 292, 1108
SfcI CTRYAG 4 cut(s) 196, 456, 988, 1113
SphI GCATGC 1 cut(s) 252
Sse9I AATT 4 cut(s) 309, 353, 511, 549
SsiI CCGC 9 cut(s) 89, 190, 223, 253, 474, 520, 862, 889, 976
SspMI CTAG 2 cut(s) 831, 963
SstI GAGCTC 1 cut(s) 664
StyD4I CCNGG 2 cut(s) 123, 854
StyI CCWWGG 1 cut(s) 496
TaaI ACNGT 3 cut(s) 44, 172, 1268
TaqI TCGA 4 cut(s) 24, 36, 421, 664
TasI AATT 4 cut(s) 309, 353, 511, 549
TatI WGTACW 1 cut(s) 1084
TauI GCSGC 5 cut(s) 91, 226, 255, 476, 864
TfiI GAWTC 3 cut(s) 602, 1148, 1187
Tru1I TTAA 4 cut(s) 308, 1073, 1175, 1262
Tru9I TTAA 4 cut(s) 308, 1073, 1175, 1262
TscAI CASTG 3 cut(s) 177, 475, 1050
TseI GCWGC 4 cut(s) 56, 314, 476, 987
TspDTI ATGAA 9 cut(s) 252, 353, 381, 594, 726, 738, 963, 1071, 1200
TspRI CASTG 3 cut(s) 177, 475, 1050
Van91I CCANNNNNTGG 1 cut(s) 651
XapI RAATTY 2 cut(s) 511, 549
XceI RCATGY 1 cut(s) 252
XspI CTAG 2 cut(s) 831, 963
Zsp2I ATGCAT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.