E3 ubiquitin-protein ligase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1017 |
| AccB1I | GGYRCC | 1 cut(s) | 836 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 651 |
| AccII | CGCG | 1 cut(s) | 1210 |
| AciI | CCGC | 9 cut(s) | 89, 190, 223, 253, 474, 520, 862, 889, 976 |
| AclWI | GGATC | 3 cut(s) | 44, 388, 565 |
| AcoI | YGGCCR | 2 cut(s) | 76, 1225 |
| AcsI | RAATTY | 2 cut(s) | 511, 549 |
| AdeI | CACNNNGTG | 1 cut(s) | 263 |
| AfaI | GTAC | 1 cut(s) | 1086 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 124, 651, 895, 934 |
| AgsI | TTSAA | 4 cut(s) | 548, 554, 1152, 1205 |
| AjnI | CCWGG | 1 cut(s) | 854 |
| AluBI | AGCT | 5 cut(s) | 317, 359, 401, 662, 902 |
| AluI | AGCT | 5 cut(s) | 317, 359, 401, 662, 902 |
| Alw21I | GWGCWC | 1 cut(s) | 664 |
| Alw26I | GTCTC | 1 cut(s) | 1173 |
| AlwI | GGATC | 3 cut(s) | 44, 388, 565 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 689 |
| AoxI | GGCC | 4 cut(s) | 30, 76, 992, 1225 |
| ApeKI | GCWGC | 4 cut(s) | 56, 314, 476, 987 |
| ApoI | RAATTY | 2 cut(s) | 511, 549 |
| AspLEI | GCGC | 3 cut(s) | 10, 621, 1210 |
| AspS9I | GGNCC | 1 cut(s) | 993 |
| AsuC2I | CCSGG | 1 cut(s) | 125 |
| AsuHPI | GGTGA | 3 cut(s) | 56, 672, 716 |
| BalI | TGGCCA | 1 cut(s) | 1227 |
| BanI | GGYRCC | 1 cut(s) | 836 |
| BanII | GRGCYC | 2 cut(s) | 125, 664 |
| BauI | CACGAG | 3 cut(s) | 68, 80, 1221 |
| Bbv12I | GWGCWC | 1 cut(s) | 664 |
| BbvI | GCAGC | 4 cut(s) | 43, 326, 463, 974 |
| BccI | CCATC | 6 cut(s) | 169, 584, 645, 695, 1111, 1236 |
| BceAI | ACGGC | 2 cut(s) | 17, 91 |
| BciT130I | CCWGG | 1 cut(s) | 856 |
| BcnI | CCSGG | 1 cut(s) | 125 |
| BcoDI | GTCTC | 1 cut(s) | 1173 |
| BfaI | CTAG | 2 cut(s) | 831, 963 |
| BfmI | CTRYAG | 4 cut(s) | 196, 456, 988, 1113 |
| BisI | GCNGC | 9 cut(s) | 57, 89, 224, 253, 315, 474, 477, 862, 988 |
| BlpI | GCTNAGC | 1 cut(s) | 1032 |
| BlsI | GCNGC | 9 cut(s) | 58, 90, 225, 254, 316, 475, 478, 863, 989 |
| Bme1390I | CCNGG | 2 cut(s) | 125, 856 |
| BmgT120I | GGNCC | 1 cut(s) | 993 |
| BmiI | GGNNCC | 6 cut(s) | 87, 116, 122, 129, 838, 860 |
| BmrFI | CCNGG | 2 cut(s) | 125, 856 |
| BmsI | GCATC | 2 cut(s) | 292, 1108 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1032 |
| BpuMI | CCSGG | 1 cut(s) | 125 |
| BsaJI | CCNNGG | 2 cut(s) | 496, 1267 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 124, 651, 895, 934 |
| Bse118I | RCCGGY | 1 cut(s) | 4 |
| Bse1I | ACTGG | 1 cut(s) | 939 |
| Bse3DI | GCAATG | 1 cut(s) | 405 |
| BseBI | CCWGG | 1 cut(s) | 856 |
| BseDI | CCNNGG | 2 cut(s) | 496, 1267 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 124, 651, 895, 934 |
| BseMI | GCAATG | 1 cut(s) | 405 |
| BseMII | CTCAG | 1 cut(s) | 1023 |
| BseNI | ACTGG | 1 cut(s) | 939 |
| BseRI | GAGGAG | 3 cut(s) | 41, 98, 587 |
| BseXI | GCAGC | 4 cut(s) | 43, 326, 463, 974 |
| BsgI | GTGCAG | 2 cut(s) | 170, 1026 |
| Bsh1236I | CGCG | 1 cut(s) | 1210 |
| Bsh1285I | CGRYCG | 1 cut(s) | 112 |
| BshFI | GGCC | 4 cut(s) | 32, 78, 994, 1227 |
| BshNI | GGYRCC | 1 cut(s) | 836 |
| BsiEI | CGRYCG | 1 cut(s) | 112 |
| BsiHKAI | GWGCWC | 1 cut(s) | 664 |
| BsiSI | CCGG | 4 cut(s) | 5, 92, 118, 125 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 124, 651, 895, 934 |
| BsmAI | GTCTC | 1 cut(s) | 1173 |
| BsmBI | CGTCTC | 1 cut(s) | 1173 |
| BsmI | GAATGC | 5 cut(s) | 185, 209, 245, 700, 856 |
| BsnI | GGCC | 4 cut(s) | 32, 78, 994, 1227 |
| Bsp1286I | GDGCHC | 2 cut(s) | 125, 664 |
| Bsp143I | GATC | 4 cut(s) | 49, 109, 393, 557 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1032 |
| BspACI | CCGC | 9 cut(s) | 89, 190, 223, 253, 474, 520, 862, 889, 976 |
| BspANI | GGCC | 4 cut(s) | 32, 78, 994, 1227 |
| BspCNI | CTCAG | 1 cut(s) | 1024 |
| BspFNI | CGCG | 1 cut(s) | 1210 |
| BspHI | TCATGA | 1 cut(s) | 364 |
| BspLI | GGNNCC | 6 cut(s) | 87, 116, 122, 129, 838, 860 |
| BspMAI | CTGCAG | 2 cut(s) | 200, 992 |
| BspPI | GGATC | 3 cut(s) | 44, 388, 565 |
| BspT107I | GGYRCC | 1 cut(s) | 836 |
| BsrDI | GCAATG | 1 cut(s) | 405 |
| BsrFI | RCCGGY | 1 cut(s) | 4 |
| BsrI | ACTGG | 1 cut(s) | 939 |
| BssAI | RCCGGY | 1 cut(s) | 4 |
| BssECI | CCNNGG | 2 cut(s) | 496, 1267 |
| BssMI | GATC | 4 cut(s) | 49, 109, 393, 557 |
| BssSI | CACGAG | 3 cut(s) | 68, 80, 1221 |
| BssT1I | CCWWGG | 1 cut(s) | 496 |
| Bst2BI | CACGAG | 3 cut(s) | 68, 80, 1221 |
| Bst2UI | CCWGG | 1 cut(s) | 856 |
| Bst4CI | ACNGT | 3 cut(s) | 44, 172, 1268 |
| Bst6I | CTCTTC | 3 cut(s) | 96, 342, 366 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 204 |
| BstC8I | GCNNGC | 7 cut(s) | 6, 185, 250, 382, 783, 803, 992 |
| BstDEI | CTNAG | 2 cut(s) | 870, 1032 |
| BstDSI | CCRYGG | 1 cut(s) | 1267 |
| BstFNI | CGCG | 1 cut(s) | 1210 |
| BstHHI | GCGC | 3 cut(s) | 10, 621, 1210 |
| BstKTI | GATC | 4 cut(s) | 52, 112, 396, 560 |
| BstMAI | GTCTC | 1 cut(s) | 1173 |
| BstMBI | GATC | 4 cut(s) | 49, 109, 393, 557 |
| BstMCI | CGRYCG | 1 cut(s) | 112 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 189, 204, 249, 311, 407, 473 |
| BstNI | CCWGG | 1 cut(s) | 856 |
| BstNSI | RCATGY | 1 cut(s) | 252 |
| BstSCI | CCNGG | 2 cut(s) | 123, 854 |
| BstSFI | CTRYAG | 4 cut(s) | 196, 456, 988, 1113 |
| BstUI | CGCG | 1 cut(s) | 1210 |
| BstV1I | GCAGC | 4 cut(s) | 43, 326, 463, 974 |
| BstX2I | RGATCY | 2 cut(s) | 393, 557 |
| BstYI | RGATCY | 2 cut(s) | 393, 557 |
| BsuRI | GGCC | 4 cut(s) | 32, 78, 994, 1227 |
| BtgI | CCRYGG | 1 cut(s) | 1267 |
| BtsI | GCAGTG | 2 cut(s) | 468, 1043 |
| BtsIMutI | CAGTG | 3 cut(s) | 177, 468, 1043 |
| Cac8I | GCNNGC | 7 cut(s) | 6, 185, 250, 382, 783, 803, 992 |
| CaiI | CAGNNNCTG | 1 cut(s) | 689 |
| CciI | TCATGA | 1 cut(s) | 364 |
| CfoI | GCGC | 3 cut(s) | 10, 621, 1210 |
| Cfr10I | RCCGGY | 1 cut(s) | 4 |
| Cfr13I | GGNCC | 1 cut(s) | 993 |
| CseI | GACGC | 1 cut(s) | 1199 |
| Csp6I | GTAC | 1 cut(s) | 1085 |
| CviAII | CATG | 4 cut(s) | 220, 249, 365, 786 |
| CviQI | GTAC | 1 cut(s) | 1085 |
| DdeI | CTNAG | 2 cut(s) | 870, 1032 |
| DpnI | GATC | 4 cut(s) | 51, 111, 395, 559 |
| DpnII | GATC | 4 cut(s) | 49, 109, 393, 557 |
| DraIII | CACNNNGTG | 1 cut(s) | 263 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1017 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1017 |
| EaeI | YGGCCR | 2 cut(s) | 76, 1225 |
| Eam1104I | CTCTTC | 3 cut(s) | 96, 342, 366 |
| EarI | CTCTTC | 3 cut(s) | 96, 342, 366 |
| EciI | GGCGGA | 1 cut(s) | 535 |
| Ecl136II | GAGCTC | 1 cut(s) | 662 |
| Eco130I | CCWWGG | 1 cut(s) | 496 |
| Eco24I | GRGCYC | 2 cut(s) | 125, 664 |
| Eco32I | GATATC | 1 cut(s) | 922 |
| Eco53kI | GAGCTC | 1 cut(s) | 662 |
| EcoICRI | GAGCTC | 1 cut(s) | 662 |
| EcoRII | CCWGG | 1 cut(s) | 854 |
| EcoRV | GATATC | 1 cut(s) | 922 |
| EcoT14I | CCWWGG | 1 cut(s) | 496 |
| EcoT22I | ATGCAT | 1 cut(s) | 209 |
| EcoT38I | GRGCYC | 2 cut(s) | 125, 664 |
| ErhI | CCWWGG | 1 cut(s) | 496 |
| Esp3I | CGTCTC | 1 cut(s) | 1173 |
| FaeI | CATG | 4 cut(s) | 223, 252, 368, 789 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 37, 1244 |
| FatI | CATG | 4 cut(s) | 219, 248, 364, 785 |
| Fnu4HI | GCNGC | 9 cut(s) | 57, 89, 224, 253, 315, 474, 477, 862, 988 |
| FriOI | GRGCYC | 2 cut(s) | 125, 664 |
| Fsp4HI | GCNGC | 9 cut(s) | 57, 89, 224, 253, 315, 474, 477, 862, 988 |
| FspBI | CTAG | 2 cut(s) | 831, 963 |
| GlaI | GCGC | 3 cut(s) | 9, 620, 1209 |
| GluI | GCNGC | 9 cut(s) | 57, 89, 224, 253, 315, 474, 477, 862, 988 |
| HaeIII | GGCC | 4 cut(s) | 32, 78, 994, 1227 |
| HapII | CCGG | 4 cut(s) | 5, 92, 118, 125 |
| HgaI | GACGC | 1 cut(s) | 1199 |
| HhaI | GCGC | 3 cut(s) | 10, 621, 1210 |
| Hin1II | CATG | 4 cut(s) | 223, 252, 368, 789 |
| Hin6I | GCGC | 3 cut(s) | 8, 619, 1208 |
| HinP1I | GCGC | 3 cut(s) | 8, 619, 1208 |
| HindIII | AAGCTT | 1 cut(s) | 399 |
| HinfI | GANTC | 5 cut(s) | 104, 268, 602, 1148, 1187 |
| HpaII | CCGG | 4 cut(s) | 5, 92, 118, 125 |
| HphI | GGTGA | 3 cut(s) | 56, 672, 716 |
| Hpy166II | GTNNAC | 1 cut(s) | 680 |
| Hpy188I | TCNGA | 7 cut(s) | 109, 114, 433, 562, 613, 1108, 1248 |
| Hpy188III | TCNNGA | 3 cut(s) | 326, 365, 773 |
| Hpy8I | GTNNAC | 1 cut(s) | 680 |
| Hpy99I | CGWCG | 4 cut(s) | 38, 155, 276, 426 |
| HpyAV | CCTTC | 3 cut(s) | 139, 370, 519 |
| HpyCH4III | ACNGT | 3 cut(s) | 44, 172, 1268 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 189, 204, 249, 311, 407, 473 |
| HpyF3I | CTNAG | 2 cut(s) | 870, 1032 |
| Hsp92II | CATG | 4 cut(s) | 223, 252, 368, 789 |
| HspAI | GCGC | 3 cut(s) | 8, 619, 1208 |
| KroI | GCCGGC | 1 cut(s) | 4 |
| KroNI | GCCGGC | 1 cut(s) | 6 |
| Kzo9I | GATC | 4 cut(s) | 49, 109, 393, 557 |
| LmnI | GCTCC | 6 cut(s) | 85, 114, 120, 127, 659, 858 |
| Lsp1109I | GCAGC | 4 cut(s) | 43, 326, 463, 974 |
| LweI | GCATC | 2 cut(s) | 292, 1108 |
| MaeI | CTAG | 2 cut(s) | 831, 963 |
| MaeIII | GTNAC | 1 cut(s) | 500 |
| MalI | GATC | 4 cut(s) | 51, 111, 395, 559 |
| MboI | GATC | 4 cut(s) | 49, 109, 393, 557 |
| MboII | GAAGA | 9 cut(s) | 107, 110, 113, 359, 380, 383, 600, 1160, 1261 |
| MflI | RGATCY | 2 cut(s) | 393, 557 |
| MhlI | GDGCHC | 2 cut(s) | 125, 664 |
| MlsI | TGGCCA | 1 cut(s) | 1227 |
| MluCI | AATT | 4 cut(s) | 309, 353, 511, 549 |
| MluNI | TGGCCA | 1 cut(s) | 1227 |
| MlyI | GAGTC | 2 cut(s) | 113, 277 |
| MmeI | TCCRAC | 2 cut(s) | 897, 988 |
| Mox20I | TGGCCA | 1 cut(s) | 1227 |
| Mph1103I | ATGCAT | 1 cut(s) | 209 |
| MroNI | GCCGGC | 1 cut(s) | 4 |
| MscI | TGGCCA | 1 cut(s) | 1227 |
| MseI | TTAA | 4 cut(s) | 308, 1073, 1175, 1262 |
| Msp20I | TGGCCA | 1 cut(s) | 1227 |
| MspA1I | CMGCKG | 1 cut(s) | 476 |
| MspI | CCGG | 4 cut(s) | 5, 92, 118, 125 |
| MspR9I | CCNGG | 2 cut(s) | 125, 856 |
| Mva1269I | GAATGC | 5 cut(s) | 185, 209, 245, 700, 856 |
| MvaI | CCWGG | 1 cut(s) | 856 |
| MvnI | CGCG | 1 cut(s) | 1210 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 189, 204, 249, 311, 407, 473 |
| NaeI | GCCGGC | 1 cut(s) | 6 |
| NciI | CCSGG | 1 cut(s) | 125 |
| NdeII | GATC | 4 cut(s) | 49, 109, 393, 557 |
| NgoMIV | GCCGGC | 1 cut(s) | 4 |
| NlaIII | CATG | 4 cut(s) | 223, 252, 368, 789 |
| NlaIV | GGNNCC | 6 cut(s) | 87, 116, 122, 129, 838, 860 |
| NmeAIII | GCCGAG | 1 cut(s) | 156 |
| NsiI | ATGCAT | 1 cut(s) | 209 |
| NspI | RCATGY | 1 cut(s) | 252 |
| PaeI | GCATGC | 1 cut(s) | 252 |
| PagI | TCATGA | 1 cut(s) | 364 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 30, 147, 159 |
| PctI | GAATGC | 5 cut(s) | 185, 209, 245, 700, 856 |
| PdiI | GCCGGC | 1 cut(s) | 6 |
| PfeI | GAWTC | 3 cut(s) | 602, 1148, 1187 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 651 |
| PkrI | GCNGC | 9 cut(s) | 58, 90, 225, 254, 316, 475, 478, 863, 989 |
| Ple19I | CGATCG | 1 cut(s) | 112 |
| PleI | GAGTC | 2 cut(s) | 112, 276 |
| PpsI | GAGTC | 2 cut(s) | 112, 276 |
| Psp124BI | GAGCTC | 1 cut(s) | 664 |
| Psp6I | CCWGG | 1 cut(s) | 854 |
| PspGI | CCWGG | 1 cut(s) | 854 |
| PspN4I | GGNNCC | 6 cut(s) | 87, 116, 122, 129, 838, 860 |
| PspPI | GGNCC | 1 cut(s) | 993 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 942, 974 |
| PstI | CTGCAG | 2 cut(s) | 200, 992 |
| PstNI | CAGNNNCTG | 1 cut(s) | 689 |
| PsuI | RGATCY | 2 cut(s) | 393, 557 |
| PvuI | CGATCG | 1 cut(s) | 112 |
| RsaI | GTAC | 1 cut(s) | 1086 |
| RsaNI | GTAC | 1 cut(s) | 1085 |
| SacI | GAGCTC | 1 cut(s) | 664 |
| SaqAI | TTAA | 4 cut(s) | 308, 1073, 1175, 1262 |
| SatI | GCNGC | 9 cut(s) | 57, 89, 224, 253, 315, 474, 477, 862, 988 |
| Sau3AI | GATC | 4 cut(s) | 49, 109, 393, 557 |
| Sau96I | GGNCC | 1 cut(s) | 993 |
| SchI | GAGTC | 2 cut(s) | 113, 277 |
| ScrFI | CCNGG | 2 cut(s) | 125, 856 |
| SduI | GDGCHC | 2 cut(s) | 125, 664 |
| SfaNI | GCATC | 2 cut(s) | 292, 1108 |
| SfcI | CTRYAG | 4 cut(s) | 196, 456, 988, 1113 |
| SphI | GCATGC | 1 cut(s) | 252 |
| Sse9I | AATT | 4 cut(s) | 309, 353, 511, 549 |
| SsiI | CCGC | 9 cut(s) | 89, 190, 223, 253, 474, 520, 862, 889, 976 |
| SspMI | CTAG | 2 cut(s) | 831, 963 |
| SstI | GAGCTC | 1 cut(s) | 664 |
| StyD4I | CCNGG | 2 cut(s) | 123, 854 |
| StyI | CCWWGG | 1 cut(s) | 496 |
| TaaI | ACNGT | 3 cut(s) | 44, 172, 1268 |
| TaqI | TCGA | 4 cut(s) | 24, 36, 421, 664 |
| TasI | AATT | 4 cut(s) | 309, 353, 511, 549 |
| TatI | WGTACW | 1 cut(s) | 1084 |
| TauI | GCSGC | 5 cut(s) | 91, 226, 255, 476, 864 |
| TfiI | GAWTC | 3 cut(s) | 602, 1148, 1187 |
| Tru1I | TTAA | 4 cut(s) | 308, 1073, 1175, 1262 |
| Tru9I | TTAA | 4 cut(s) | 308, 1073, 1175, 1262 |
| TscAI | CASTG | 3 cut(s) | 177, 475, 1050 |
| TseI | GCWGC | 4 cut(s) | 56, 314, 476, 987 |
| TspDTI | ATGAA | 9 cut(s) | 252, 353, 381, 594, 726, 738, 963, 1071, 1200 |
| TspRI | CASTG | 3 cut(s) | 177, 475, 1050 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 651 |
| XapI | RAATTY | 2 cut(s) | 511, 549 |
| XceI | RCATGY | 1 cut(s) | 252 |
| XspI | CTAG | 2 cut(s) | 831, 963 |
| Zsp2I | ATGCAT | 1 cut(s) | 209 |