Prupe.4G050700_v2.0.a1

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
2424958 .. 2431268
6311 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G050700.1

Sequence Viewer

Length: 1314 bp
ATGCCGGCACAGAAGCGCACCCCAGAGTCTGTGGAAGATGATCCTCTGCAGAACCACCATGAAAACAGCCACGACCATCCACAAGACGAAGAGGAGTCCGATCGAAGCCTTTCCCCGAGTAACGAAGAGAAAGACGAATATATCATAGTGAAATTGGCAGAAATTCGGAAAGAAGTCCAATGTCCTATCTGTTTAGGGATCATTCGGAAAACAAGAACAGTGATGGAATGCCTGCATCGCTTCTGCAGGGAATGCATCGACAAGTCCATGCGCCTGGGGAACAATGAATGCCCTGCATGCCGCACCCATTGTGCTAGTCGTCGCTCTTTGAGAGATGACCCAAACTACGATGCCTTAATTGCAGCCATCTATCCAGATATTGACAAGTATGAGGAAGAGGAACTGGCTTTTCATGAAGAGGAGAAGGCTCGCAATAAGCAGATCCAAGCTTCCATTGCCCAGACATTTCGACGACAATCTGAGGCACTAGGAAGGAAACGAACAACAGCTAAAGCAACTGCAGCTGCATTTATGAGGAGATCACAGGGTAGCTATCGAAATGCTCATTTGAGGGGGAGAAGAAACTATAGAAATGTTGCTGAACATCAAGGTTCCGATGATAACGAGGATGCAAATGGTAATGATGGAGGTAAAGACTCAACTTCTGGTGACGAGCGCACAGAACCAAGACCAAAGAGATGCAAAAGATGGGGAGGAGGTCGATCAGGATCTGCTAATGCAGATGGTGGTGATGAAAATGATTATGAATTGAACAGAGAAATTATGGGTGCGTCTGCGGGGCTTGTTGGCAGCTCAGAAAGGCTTGCCTGGGGTAAAGGTGGCATGCGGAGCCATACGCGGTATGGCAGTACAAGTGGTGGCAATGGCAAAAATGCCAGGAACATCCGCCTCTCTAAGTTGGTGGAGTATCTTCGGAACTCAGAAAACCACAATGATGAGTTGGACATCCACCTCCTGCTTGTTTCTTTTGATGAGCAAAGAATACCCAGTTTGCAGCGGCCGTATCTTTGCTGCAGGCCTACCCTGTCAGTTGGACAACTATGTCACTATGTAGCTCTCCGAACCGCACTGCAAGCTGATGAAGTTGAATTGTACTTGGTGAAAGAGCTGCATGCCAAATTCAGTCATTCAACTGCCACAAATGTCCTAATTTCCAAGTCAGTTGTTTTAGACTCAACCAAAGATAACCTGCAACTATTAAGAGAACAAGAAACGTTGGCAGACCTTAGAACACACAATCTCATTCCCGGTCATCTGCTTTTGGCATATCAGAAGAAATGGAACTCAAGCTGA

Protein Analysis

438

Amino Acids

49.47

Weight (kDa)

6.8

Isoelectric Point (pI)

59.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1062
Acc36I ACCTGC 1 cut(s) 1218
AccII CGCG 1 cut(s) 859
AciI CCGC 7 cut(s) 301, 797, 847, 859, 907, 1018, 1086
AclI AACGTT 1 cut(s) 1235
AclWI GGATC 4 cut(s) 35, 206, 436, 736
AcoI YGGCCR 1 cut(s) 1019
AcsI RAATTY 2 cut(s) 162, 1139
AfaI GTAC 2 cut(s) 871, 1115
AgsI TTSAA 3 cut(s) 772, 1109, 1152
AjnI CCWGG 3 cut(s) 273, 827, 896
AluBI AGCT 9 cut(s) 449, 509, 524, 552, 813, 1076, 1097, 1129, 1311
AluI AGCT 9 cut(s) 449, 509, 524, 552, 813, 1076, 1097, 1129, 1311
AlwI GGATC 4 cut(s) 35, 206, 436, 736
AlwNI CAGNNNCTG 2 cut(s) 29, 731
Ama87I CYCGRG 1 cut(s) 115
AoxI GGCC 2 cut(s) 1019, 1037
ApeKI GCWGC 7 cut(s) 362, 521, 524, 810, 1015, 1032, 1129
ApoI RAATTY 2 cut(s) 162, 1139
Asp700I GAANNNNTTC 1 cut(s) 109
AspLEI GCGC 3 cut(s) 18, 273, 678
AsuC2I CCSGG 1 cut(s) 1269
AsuHPI GGTGA 3 cut(s) 680, 761, 1132
AvaI CYCGRG 1 cut(s) 115
BbvI GCAGC 7 cut(s) 374, 511, 533, 822, 1019, 1027, 1116
BccI CCATC 6 cut(s) 84, 217, 374, 638, 702, 737
BceAI ACGGC 1 cut(s) 1006
BciT130I CCWGG 3 cut(s) 275, 829, 898
BcnI CCSGG 1 cut(s) 1269
BfaI CTAG 2 cut(s) 315, 488
BfmI CTRYAG 5 cut(s) 47, 244, 519, 586, 1033
BfuAI ACCTGC 1 cut(s) 1218
BisI GCNGC 9 cut(s) 301, 363, 522, 525, 811, 1016, 1019, 1033, 1130
BlsI GCNGC 9 cut(s) 302, 364, 523, 526, 812, 1017, 1020, 1034, 1131
Bme1390I CCNGG 4 cut(s) 275, 829, 898, 1269
BmeT110I CYCGRG 1 cut(s) 115
BmiI GGNNCC 2 cut(s) 613, 851
BmrFI CCNGG 4 cut(s) 275, 829, 898, 1269
BmrI ACTGGG 1 cut(s) 1002
BmsI GCATC 5 cut(s) 244, 264, 340, 619, 689
BmuI ACTGGG 1 cut(s) 1002
BpuEI CTTGAG 1 cut(s) 1291
BpuMI CCSGG 1 cut(s) 1269
BsaBI GATNNNNATC 1 cut(s) 727
BsaJI CCNNGG 2 cut(s) 274, 828
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 2 cut(s) 408, 1008
Bse3DI GCAATG 2 cut(s) 453, 889
Bse8I GATNNNNATC 1 cut(s) 727
BseBI CCWGG 3 cut(s) 275, 829, 898
BseDI CCNNGG 2 cut(s) 274, 828
BseGI GGATG 4 cut(s) 76, 634, 903, 966
BseJI GATNNNNATC 1 cut(s) 727
BseMI GCAATG 2 cut(s) 453, 889
BseMII CTCAG 3 cut(s) 471, 828, 954
BseNI ACTGG 2 cut(s) 408, 1008
BseRI GAGGAG 4 cut(s) 107, 434, 550, 729
BseX3I CGGCCG 1 cut(s) 1019
BseXI GCAGC 7 cut(s) 374, 511, 533, 822, 1019, 1027, 1116
Bsh1236I CGCG 1 cut(s) 859
Bsh1285I CGRYCG 2 cut(s) 103, 1022
BshFI GGCC 2 cut(s) 1021, 1039
BsiEI CGRYCG 2 cut(s) 103, 1022
BsiHKCI CYCGRG 1 cut(s) 115
BsiSI CCGG 2 cut(s) 5, 1269
BsmI GAATGC 3 cut(s) 233, 257, 293
BsnI GGCC 2 cut(s) 1021, 1039
BsoBI CYCGRG 1 cut(s) 115
Bsp143I GATC 7 cut(s) 40, 100, 198, 441, 539, 722, 728
BspACI CCGC 7 cut(s) 301, 797, 847, 859, 907, 1018, 1086
BspANI GGCC 2 cut(s) 1021, 1039
BspCNI CTCAG 3 cut(s) 472, 827, 953
BspFNI CGCG 1 cut(s) 859
BspHI TCATGA 1 cut(s) 412
BspLI GGNNCC 2 cut(s) 613, 851
BspMAI CTGCAG 4 cut(s) 51, 248, 523, 1037
BspMI ACCTGC 1 cut(s) 1218
BspPI GGATC 4 cut(s) 35, 206, 436, 736
BsrDI GCAATG 2 cut(s) 453, 889
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 2 cut(s) 408, 1008
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 2 cut(s) 274, 828
BssMI GATC 7 cut(s) 40, 100, 198, 441, 539, 722, 728
Bst2UI CCWGG 3 cut(s) 275, 829, 898
Bst4CI ACNGT 1 cut(s) 220
Bst6I CTCTTC 4 cut(s) 84, 120, 390, 411
BstAPI GCANNNNNTGC 1 cut(s) 252
BstC8I GCNNGC 9 cut(s) 6, 233, 298, 430, 825, 845, 1037, 1095, 1134
BstDEI CTNAG 5 cut(s) 480, 814, 915, 940, 1247
BstF5I GGATG 4 cut(s) 76, 634, 903, 966
BstFNI CGCG 1 cut(s) 859
BstHHI GCGC 3 cut(s) 18, 273, 678
BstKTI GATC 7 cut(s) 43, 103, 201, 444, 542, 725, 731
BstMBI GATC 7 cut(s) 40, 100, 198, 441, 539, 722, 728
BstMCI CGRYCG 2 cut(s) 103, 1022
BstMWI GCNNNNNNNGC 8 cut(s) 237, 252, 297, 359, 455, 521, 849, 1094
BstNI CCWGG 3 cut(s) 275, 829, 898
BstNSI RCATGY 3 cut(s) 300, 847, 1136
BstSCI CCNGG 4 cut(s) 273, 827, 896, 1267
BstSFI CTRYAG 5 cut(s) 47, 244, 519, 586, 1033
BstUI CGCG 1 cut(s) 859
BstV1I GCAGC 7 cut(s) 374, 511, 533, 822, 1019, 1027, 1116
BstX2I RGATCY 2 cut(s) 441, 728
BstXI CCANNNNNNTGG 1 cut(s) 274
BstYI RGATCY 2 cut(s) 441, 728
BstZI CGGCCG 1 cut(s) 1019
BsuRI GGCC 2 cut(s) 1021, 1039
BtgZI GCGATG 1 cut(s) 221
BtsCI GGATG 4 cut(s) 76, 634, 903, 966
BtsI GCAGTG 1 cut(s) 1088
BtsIMutI CAGTG 2 cut(s) 225, 1088
BveI ACCTGC 1 cut(s) 1218
Cac8I GCNNGC 9 cut(s) 6, 233, 298, 430, 825, 845, 1037, 1095, 1134
CaiI CAGNNNCTG 2 cut(s) 29, 731
CciI TCATGA 1 cut(s) 412
CfoI GCGC 3 cut(s) 18, 273, 678
Cfr10I RCCGGY 1 cut(s) 4
CseI GACGC 1 cut(s) 780
Csp6I GTAC 2 cut(s) 870, 1114
CviAII CATG 6 cut(s) 59, 268, 297, 413, 844, 1133
CviQI GTAC 2 cut(s) 870, 1114
DdeI CTNAG 5 cut(s) 480, 814, 915, 940, 1247
DpnI GATC 7 cut(s) 42, 102, 200, 443, 541, 724, 730
DpnII GATC 7 cut(s) 40, 100, 198, 441, 539, 722, 728
DrdI GACNNNNNNGTC 1 cut(s) 1062
DseDI GACNNNNNNGTC 1 cut(s) 1062
EaeI YGGCCR 1 cut(s) 1019
EagI CGGCCG 1 cut(s) 1019
Eam1104I CTCTTC 4 cut(s) 84, 120, 390, 411
EarI CTCTTC 4 cut(s) 84, 120, 390, 411
EciI GGCGGA 1 cut(s) 896
EclXI CGGCCG 1 cut(s) 1019
Eco147I AGGCCT 1 cut(s) 1039
Eco52I CGGCCG 1 cut(s) 1019
Eco88I CYCGRG 1 cut(s) 115
EcoRII CCWGG 3 cut(s) 273, 827, 896
EcoT22I ATGCAT 1 cut(s) 257
FaeI CATG 6 cut(s) 62, 271, 300, 416, 847, 1136
FatI CATG 6 cut(s) 58, 267, 296, 412, 843, 1132
FauI CCCGC 1 cut(s) 790
Fnu4HI GCNGC 9 cut(s) 301, 363, 522, 525, 811, 1016, 1019, 1033, 1130
FokI GGATG 4 cut(s) 63, 641, 890, 953
Fsp4HI GCNGC 9 cut(s) 301, 363, 522, 525, 811, 1016, 1019, 1033, 1130
FspBI CTAG 2 cut(s) 315, 488
GlaI GCGC 3 cut(s) 17, 272, 677
GluI GCNGC 9 cut(s) 301, 363, 522, 525, 811, 1016, 1019, 1033, 1130
HaeIII GGCC 2 cut(s) 1021, 1039
HapII CCGG 2 cut(s) 5, 1269
HgaI GACGC 1 cut(s) 780
HhaI GCGC 3 cut(s) 18, 273, 678
Hin1II CATG 6 cut(s) 62, 271, 300, 416, 847, 1136
Hin6I GCGC 3 cut(s) 16, 271, 676
HinP1I GCGC 3 cut(s) 16, 271, 676
HindIII AAGCTT 1 cut(s) 447
HinfI GANTC 4 cut(s) 26, 95, 656, 1193
HpaII CCGG 2 cut(s) 5, 1269
HphI GGTGA 3 cut(s) 680, 761, 1132
Hpy188III TCNNGA 3 cut(s) 374, 413, 726
Hpy99I CGWCG 2 cut(s) 324, 474
HpyAV CCTTC 2 cut(s) 418, 486
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4IV ACGT 1 cut(s) 1235
HpyF10VI GCNNNNNNNGC 8 cut(s) 237, 252, 297, 359, 455, 521, 849, 1094
HpyF3I CTNAG 5 cut(s) 480, 814, 915, 940, 1247
HpySE526I ACGT 1 cut(s) 1235
Hsp92II CATG 6 cut(s) 62, 271, 300, 416, 847, 1136
HspAI GCGC 3 cut(s) 16, 271, 676
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 7 cut(s) 40, 100, 198, 441, 539, 722, 728
LmnI GCTCC 1 cut(s) 849
Lsp1109I GCAGC 7 cut(s) 374, 511, 533, 822, 1019, 1027, 1116
LweI GCATC 5 cut(s) 244, 264, 340, 619, 689
MaeI CTAG 2 cut(s) 315, 488
MaeII ACGT 1 cut(s) 1235
MaeIII GTNAC 3 cut(s) 119, 668, 1064
MalI GATC 7 cut(s) 42, 102, 200, 443, 541, 724, 730
MboI GATC 7 cut(s) 40, 100, 198, 441, 539, 722, 728
MboII GAAGA 8 cut(s) 47, 101, 137, 407, 428, 591, 923, 1306
MflI RGATCY 2 cut(s) 441, 728
MluCI AATT 8 cut(s) 152, 162, 357, 767, 780, 1109, 1139, 1170
MlyI GAGTC 4 cut(s) 35, 104, 650, 1187
MmeI TCCRAC 2 cut(s) 942, 1033
Mph1103I ATGCAT 1 cut(s) 257
MroNI GCCGGC 1 cut(s) 4
MroXI GAANNNNTTC 1 cut(s) 109
MseI TTAA 2 cut(s) 356, 1220
MslI CAYNNNNRTG 1 cut(s) 954
MspA1I CMGCKG 2 cut(s) 524, 1018
MspI CCGG 2 cut(s) 5, 1269
MspR9I CCNGG 4 cut(s) 275, 829, 898, 1269
Mva1269I GAATGC 3 cut(s) 233, 257, 293
MvaI CCWGG 3 cut(s) 275, 829, 898
MvnI CGCG 1 cut(s) 859
MwoI GCNNNNNNNGC 8 cut(s) 237, 252, 297, 359, 455, 521, 849, 1094
NaeI GCCGGC 1 cut(s) 6
NciI CCSGG 1 cut(s) 1269
NdeII GATC 7 cut(s) 40, 100, 198, 441, 539, 722, 728
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 6 cut(s) 62, 271, 300, 416, 847, 1136
NlaIV GGNNCC 2 cut(s) 613, 851
NmuCI GTSAC 2 cut(s) 668, 1064
NsiI ATGCAT 1 cut(s) 257
NspI RCATGY 3 cut(s) 300, 847, 1136
PaeI GCATGC 3 cut(s) 300, 847, 1136
PagI TCATGA 1 cut(s) 412
PceI AGGCCT 1 cut(s) 1039
PctI GAATGC 3 cut(s) 233, 257, 293
PdiI GCCGGC 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 109
PkrI GCNGC 9 cut(s) 302, 364, 523, 526, 812, 1017, 1020, 1034, 1131
Ple19I CGATCG 1 cut(s) 103
PleI GAGTC 4 cut(s) 34, 103, 650, 1187
PpsI GAGTC 4 cut(s) 34, 103, 650, 1187
Psp1406I AACGTT 1 cut(s) 1235
Psp6I CCWGG 3 cut(s) 273, 827, 896
PspGI CCWGG 3 cut(s) 273, 827, 896
PspN4I GGNNCC 2 cut(s) 613, 851
PstI CTGCAG 4 cut(s) 51, 248, 523, 1037
PstNI CAGNNNCTG 2 cut(s) 29, 731
PsuI RGATCY 2 cut(s) 441, 728
PvuI CGATCG 1 cut(s) 103
PvuII CAGCTG 1 cut(s) 524
RsaI GTAC 2 cut(s) 871, 1115
RsaNI GTAC 2 cut(s) 870, 1114
RseI CAYNNNNRTG 1 cut(s) 954
SaqAI TTAA 2 cut(s) 356, 1220
SatI GCNGC 9 cut(s) 301, 363, 522, 525, 811, 1016, 1019, 1033, 1130
Sau3AI GATC 7 cut(s) 40, 100, 198, 441, 539, 722, 728
SchI GAGTC 4 cut(s) 35, 104, 650, 1187
ScrFI CCNGG 4 cut(s) 275, 829, 898, 1269
SfaNI GCATC 5 cut(s) 244, 264, 340, 619, 689
SfcI CTRYAG 5 cut(s) 47, 244, 519, 586, 1033
SmiMI CAYNNNNRTG 1 cut(s) 954
SmlI CTYRAG 1 cut(s) 1306
SmoI CTYRAG 1 cut(s) 1306
SphI GCATGC 3 cut(s) 300, 847, 1136
Sse9I AATT 8 cut(s) 152, 162, 357, 767, 780, 1109, 1139, 1170
SseBI AGGCCT 1 cut(s) 1039
SsiI CCGC 7 cut(s) 301, 797, 847, 859, 907, 1018, 1086
SspMI CTAG 2 cut(s) 315, 488
StuI AGGCCT 1 cut(s) 1039
StyD4I CCNGG 4 cut(s) 273, 827, 896, 1267
TaaI ACNGT 1 cut(s) 220
TaiI ACGT 1 cut(s) 1238
TaqI TCGA 5 cut(s) 103, 258, 469, 556, 721
TasI AATT 8 cut(s) 152, 162, 357, 767, 780, 1109, 1139, 1170
TatI WGTACW 2 cut(s) 869, 1113
TauI GCSGC 2 cut(s) 303, 1021
Tru1I TTAA 2 cut(s) 356, 1220
Tru9I TTAA 2 cut(s) 356, 1220
TscAI CASTG 2 cut(s) 225, 1095
TseFI GTSAC 2 cut(s) 668, 1064
TseI GCWGC 7 cut(s) 362, 521, 524, 810, 1015, 1032, 1129
Tsp45I GTSAC 2 cut(s) 668, 1064
TspDTI ATGAA 7 cut(s) 75, 300, 401, 429, 768, 780, 1116
TspRI CASTG 2 cut(s) 225, 1095
XapI RAATTY 2 cut(s) 162, 1139
XceI RCATGY 3 cut(s) 300, 847, 1136
XcmI CCANNNNNNNNNTGG 1 cut(s) 860
XmnI GAANNNNTTC 1 cut(s) 109
XspI CTAG 2 cut(s) 315, 488
Zsp2I ATGCAT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.