pycom09g16250

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
16417718 .. 16425405
7688 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g16250.2

Sequence Viewer

Length: 1410 bp
ATGCCTTCACAGAAGCGTTCGTCACCAGAGCAGCACAGCGACGATGAAGACCATCGCCACCACCAACGACCCAAGCAATCTCGACCGCAAGATGAACACCAACTGCTGCAACAAGAAGAAGAAGAGGAAGAAGAAGAAGTAGCAGTAGAAGAAAAAGATGAAGACGACGAACACGATGCCGATTCTAATGGCAGCGCATCTTCTACTTCTCAAGAAACTCCTGAATTTATATTCATACAACTGCCAGAACTCCGTAAAGATGTACACTGTCCAATATGTCTTGGAATTATTAAGAAAACACGAACTGTAATGGGATGCCTACACAGGTTTTGCAGGGAATGTATCGACAAGTCAATGCGAATGGGGAACAATGAGTGTCCTGCTTGTCGCACACACTGTGCAAGTCGGCGTTCATTGAGAGATGATCCAAAGTATGATGCCCTAATAGCAGCTTTATATCCAGATATTGAGAAGTATGAGGAGGAGGAATTGGCTTTCCATCAGGAGGAGAGGACTCGAAACGAGCAGATCCAAGCATCAATTGCCAAAGTTGTTGAACAACAGTCAGAAGCTCTAATCAAGAGACGCGCATCTGGAAAAGATACACCAGATTCGTTTCCTGTGAGACCGCTGCGCAATAGTCGGAGTTCTGTTTTAAGGAGACGGAATTCTCGAGCCACTGATATTCAAGGATATAAAGACAATGAGGATGATAATGACAATGACAATAATAACATGGGCAAAAATTTATCTTCCACTGATGACCGGCGTGAAGTTAGGCCAAGACGGCGAAGAAGACGGGCAGGATTTCGATCCTCTCAGCCTACTTCATCTCTGGCCAATTCAAGTGGAGGATGCACTGAAAATGATATAGAAGGGAAACGAGAGAACCACGGAATTTCACCTGGTGTTGTCTGTAGCTCTGAAATGCTTGTTTGGGGGCGGGGTGGTGCCCGGAGTCACACACGGCATGGCATTGGTAGTGGTTGCAACAGTAAGAATTCTCGGAGCACGCGCATATCGAAGTTGGTTGATTATCTCCGGAGCTTAGAGGAAAACAATAATGAGTTAGATGTTCATCTCTTGCTTATTCCTAAGGATACAAGTCGTACACCAAAGTTGCAGCAGCCACACCTTTGCTGTCGGTCGAGTTTGTCACTGAAGCACCTTTGTGAATATGTTTCTCACAAGACGTCTTTGAGGGCTGAAGAAGTTGAATTATTGGAAGTGCCTCAGAGTTTCAATCACATTTCAGATGATGAGGAATTGGATTTGGATTCTGTGATAGATCCGGTCAAAAATGACCTGAAAATTCTGCAAGAAGAACAAACTTTGGCAGAGGTTAGAGCCAAAAGCATTTCCTGCAGGGACTATTTGATTATAGCATACAGGCGGAAGGAGATTAGTTAG

Protein Analysis

470

Amino Acids

53.75

Weight (kDa)

5.83

Isoelectric Point (pI)

83.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1196
Acc16I TGCGCA 1 cut(s) 635
AccB1I GGYRCC 1 cut(s) 950
AccII CGCG 2 cut(s) 588, 1015
AccIII TCCGGA 1 cut(s) 1041
AciI CCGC 4 cut(s) 86, 629, 943, 1393
AclWI GGATC 4 cut(s) 419, 523, 807, 1283
AcoI YGGCCR 1 cut(s) 837
AcsI RAATTY 6 cut(s) 224, 667, 745, 897, 1000, 1311
AcuI CTGAAG 2 cut(s) 1181, 1227
AcyI GRCGYC 1 cut(s) 1193
AdeI CACNNNGTG 2 cut(s) 398, 908
AfaI GTAC 2 cut(s) 264, 1111
AfiI CCNNNNNNNGG 1 cut(s) 505
AgsI TTSAA 5 cut(s) 557, 689, 846, 1217, 1243
AjnI CCWGG 1 cut(s) 904
AleI CACNNNNGTG 1 cut(s) 1170
AluBI AGCT 4 cut(s) 452, 572, 921, 1047
AluI AGCT 4 cut(s) 452, 572, 921, 1047
Alw21I GWGCWC 1 cut(s) 1013
Alw26I GTCTC 3 cut(s) 577, 619, 655
AlwI GGATC 4 cut(s) 419, 523, 807, 1283
Ama87I CYCGRG 1 cut(s) 672
Aor13HI TCCGGA 1 cut(s) 1041
AoxI GGCC 2 cut(s) 779, 837
ApeKI GCWGC 7 cut(s) 31, 106, 192, 449, 631, 1123, 1126
ApoI RAATTY 6 cut(s) 224, 667, 745, 897, 1000, 1311
AspLEI GCGC 4 cut(s) 197, 590, 636, 1017
AsuC2I CCSGG 1 cut(s) 955
AsuHPI GGTGA 2 cut(s) 15, 894
AvaI CYCGRG 1 cut(s) 672
AxyI CCTNAGG 1 cut(s) 1095
BaeGI GKGCMC 1 cut(s) 955
BalI TGGCCA 1 cut(s) 839
BanI GGYRCC 1 cut(s) 950
BbsI GAAGAC 3 cut(s) 54, 168, 802
Bbv12I GWGCWC 1 cut(s) 1013
BbvI GCAGC 7 cut(s) 43, 93, 204, 461, 618, 1135, 1138
BccI CCATC 2 cut(s) 60, 507
BceAI ACGGC 2 cut(s) 803, 983
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BciT130I CCWGG 1 cut(s) 906
BciVI GTATCC 1 cut(s) 1093
BcnI CCSGG 1 cut(s) 955
BcoDI GTCTC 3 cut(s) 577, 619, 655
BfmI CTRYAG 2 cut(s) 916, 1363
BfuI GTATCC 1 cut(s) 1093
BglI GCCNNNNNGGC 1 cut(s) 787
BisI GCNGC 7 cut(s) 32, 107, 193, 450, 632, 1124, 1127
BlsI GCNGC 7 cut(s) 33, 108, 194, 451, 633, 1125, 1128
Bme1390I CCNGG 2 cut(s) 906, 955
BmeT110I CYCGRG 1 cut(s) 672
BmiI GGNNCC 1 cut(s) 952
BmrFI CCNGG 2 cut(s) 906, 955
BmsI GCATC 7 cut(s) 166, 206, 305, 427, 545, 599, 845
BpiI GAAGAC 3 cut(s) 54, 168, 802
BpuEI CTTGAG 1 cut(s) 195
BpuMI CCSGG 1 cut(s) 955
BsaBI GATNNNNATC 2 cut(s) 811, 1077
BsaHI GRCGYC 1 cut(s) 1193
BsaI GGTCTC 1 cut(s) 619
BsaJI CCNNGG 1 cut(s) 892
BsaWI WCCGGW 2 cut(s) 1041, 1291
Bsc4I CCNNNNNNNGG 1 cut(s) 505
Bse118I RCCGGY 1 cut(s) 765
Bse21I CCTNAGG 1 cut(s) 1095
Bse8I GATNNNNATC 2 cut(s) 811, 1077
BseAI TCCGGA 1 cut(s) 1041
BseBI CCWGG 1 cut(s) 906
BseDI CCNNGG 1 cut(s) 892
BseGI GGATG 3 cut(s) 320, 715, 860
BseJI GATNNNNATC 2 cut(s) 811, 1077
BseLI CCNNNNNNNGG 1 cut(s) 505
BseMII CTCAG 2 cut(s) 833, 1247
BseRI GAGGAG 3 cut(s) 494, 497, 521
BseSI GKGCMC 1 cut(s) 955
BseXI GCAGC 7 cut(s) 43, 93, 204, 461, 618, 1135, 1138
Bsh1236I CGCG 2 cut(s) 588, 1015
Bsh1285I CGRYCG 2 cut(s) 86, 1148
BshFI GGCC 2 cut(s) 781, 839
BshNI GGYRCC 1 cut(s) 950
BsiEI CGRYCG 2 cut(s) 86, 1148
BsiHKAI GWGCWC 1 cut(s) 1013
BsiHKCI CYCGRG 1 cut(s) 672
BsiSI CCGG 4 cut(s) 766, 955, 1042, 1292
BslFI GGGAC 1 cut(s) 1382
BslI CCNNNNNNNGG 1 cut(s) 505
BsmAI GTCTC 3 cut(s) 577, 619, 655
BsmBI CGTCTC 2 cut(s) 577, 655
BsmFI GGGAC 1 cut(s) 1382
BsnI GGCC 2 cut(s) 781, 839
Bso31I GGTCTC 1 cut(s) 619
BsoBI CYCGRG 1 cut(s) 672
Bsp1286I GDGCHC 2 cut(s) 955, 1013
Bsp13I TCCGGA 1 cut(s) 1041
Bsp1407I TGTACA 1 cut(s) 262
Bsp143I GATC 4 cut(s) 424, 528, 812, 1288
BspACI CCGC 4 cut(s) 86, 629, 943, 1393
BspANI GGCC 2 cut(s) 781, 839
BspCNI CTCAG 2 cut(s) 832, 1246
BspEI TCCGGA 1 cut(s) 1041
BspFNI CGCG 2 cut(s) 588, 1015
BspLI GGNNCC 1 cut(s) 952
BspMAI CTGCAG 1 cut(s) 1367
BspPI GGATC 4 cut(s) 419, 523, 807, 1283
BspT107I GGYRCC 1 cut(s) 950
BspTNI GGTCTC 1 cut(s) 619
BsrFI RCCGGY 1 cut(s) 765
BsrGI TGTACA 1 cut(s) 262
BssAI RCCGGY 1 cut(s) 765
BssECI CCNNGG 1 cut(s) 892
BssMI GATC 4 cut(s) 424, 528, 812, 1288
BssNI GRCGYC 1 cut(s) 1193
Bst2UI CCWGG 1 cut(s) 906
Bst4CI ACNGT 5 cut(s) 269, 307, 398, 564, 995
Bst6I CTCTTC 1 cut(s) 117
BstACI GRCGYC 1 cut(s) 1193
BstAPI GCANNNNNTGC 2 cut(s) 542, 1362
BstAUI TGTACA 1 cut(s) 262
BstC8I GCNNGC 1 cut(s) 1013
BstDEI CTNAG 4 cut(s) 819, 1048, 1095, 1233
BstDSI CCRYGG 1 cut(s) 892
BstF5I GGATG 3 cut(s) 320, 715, 860
BstFNI CGCG 2 cut(s) 588, 1015
BstHHI GCGC 4 cut(s) 197, 590, 636, 1017
BstKTI GATC 4 cut(s) 427, 531, 815, 1291
BstMAI GTCTC 3 cut(s) 577, 619, 655
BstMBI GATC 4 cut(s) 424, 528, 812, 1288
BstMCI CGRYCG 2 cut(s) 86, 1148
BstMWI GCNNNNNNNGC 4 cut(s) 446, 542, 787, 1362
BstNI CCWGG 1 cut(s) 906
BstSCI CCNGG 2 cut(s) 904, 953
BstSFI CTRYAG 2 cut(s) 916, 1363
BstSLI GKGCMC 1 cut(s) 955
BstUI CGCG 2 cut(s) 588, 1015
BstV1I GCAGC 7 cut(s) 43, 93, 204, 461, 618, 1135, 1138
BstV2I GAAGAC 3 cut(s) 54, 168, 802
BstX2I RGATCY 2 cut(s) 528, 1288
BstYI RGATCY 2 cut(s) 528, 1288
Bsu36I CCTNAGG 1 cut(s) 1095
BsuI GTATCC 1 cut(s) 1093
BsuRI GGCC 2 cut(s) 781, 839
BtgI CCRYGG 1 cut(s) 892
BtgZI GCGATG 1 cut(s) 38
BtsCI GGATG 3 cut(s) 320, 715, 860
BtsIMutI CAGTG 6 cut(s) 265, 394, 678, 756, 858, 1157
Cac8I GCNNGC 1 cut(s) 1013
CfoI GCGC 4 cut(s) 197, 590, 636, 1017
Cfr10I RCCGGY 1 cut(s) 765
CseI GACGC 1 cut(s) 594
CsiI ACCWGGT 1 cut(s) 904
Csp6I GTAC 2 cut(s) 263, 1110
CspCI CAANNNNNGTGG 2 cut(s) 829, 864
CviAII CATG 2 cut(s) 736, 971
CviQI GTAC 2 cut(s) 263, 1110
DdeI CTNAG 4 cut(s) 819, 1048, 1095, 1233
DpnI GATC 4 cut(s) 426, 530, 814, 1290
DpnII GATC 4 cut(s) 424, 528, 812, 1288
DraIII CACNNNGTG 2 cut(s) 398, 908
EaeI YGGCCR 1 cut(s) 837
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
EciI GGCGGA 1 cut(s) 1408
Eco31I GGTCTC 1 cut(s) 619
Eco57I CTGAAG 2 cut(s) 1181, 1227
Eco81I CCTNAGG 1 cut(s) 1095
Eco88I CYCGRG 1 cut(s) 672
EcoRI GAATTC 2 cut(s) 667, 1000
EcoRII CCWGG 1 cut(s) 904
Esp3I CGTCTC 2 cut(s) 577, 655
FaeI CATG 2 cut(s) 739, 974
FaqI GGGAC 1 cut(s) 1382
FatI CATG 2 cut(s) 735, 970
FauI CCCGC 1 cut(s) 936
Fnu4HI GCNGC 7 cut(s) 32, 107, 193, 450, 632, 1124, 1127
FokI GGATG 3 cut(s) 327, 722, 867
Fsp4HI GCNGC 7 cut(s) 32, 107, 193, 450, 632, 1124, 1127
FspI TGCGCA 1 cut(s) 635
GlaI GCGC 4 cut(s) 196, 589, 635, 1016
GluI GCNGC 7 cut(s) 32, 107, 193, 450, 632, 1124, 1127
HaeIII GGCC 2 cut(s) 781, 839
HapII CCGG 4 cut(s) 766, 955, 1042, 1292
HgaI GACGC 1 cut(s) 594
HhaI GCGC 4 cut(s) 197, 590, 636, 1017
Hin1I GRCGYC 1 cut(s) 1193
Hin1II CATG 2 cut(s) 739, 974
Hin6I GCGC 4 cut(s) 195, 588, 634, 1015
HinP1I GCGC 4 cut(s) 195, 588, 634, 1015
HinfI GANTC 5 cut(s) 182, 514, 611, 958, 1277
HpaII CCGG 4 cut(s) 766, 955, 1042, 1292
HphI GGTGA 2 cut(s) 15, 894
Hpy166II GTNNAC 2 cut(s) 265, 1112
Hpy188I TCNGA 6 cut(s) 568, 645, 925, 1008, 1236, 1255
Hpy188III TCNNGA 9 cut(s) 81, 212, 221, 461, 503, 580, 594, 672, 1042
Hpy8I GTNNAC 2 cut(s) 265, 1112
Hpy99I CGWCG 2 cut(s) 44, 170
HpyAV CCTTC 3 cut(s) 15, 869, 1390
HpyCH4III ACNGT 5 cut(s) 269, 307, 398, 564, 995
HpyCH4IV ACGT 1 cut(s) 1193
HpyCH4V TGCA 8 cut(s) 109, 333, 401, 858, 990, 1123, 1318, 1365
HpyF10VI GCNNNNNNNGC 4 cut(s) 446, 542, 787, 1362
HpyF3I CTNAG 4 cut(s) 819, 1048, 1095, 1233
HpySE526I ACGT 1 cut(s) 1193
Hsp92I GRCGYC 1 cut(s) 1193
Hsp92II CATG 2 cut(s) 739, 974
HspAI GCGC 4 cut(s) 195, 588, 634, 1015
Kpn2I TCCGGA 1 cut(s) 1041
Kzo9I GATC 4 cut(s) 424, 528, 812, 1288
LmnI GCTCC 2 cut(s) 1008, 1044
Lsp1109I GCAGC 7 cut(s) 43, 93, 204, 461, 618, 1135, 1138
LweI GCATC 7 cut(s) 166, 206, 305, 427, 545, 599, 845
MabI ACCWGGT 1 cut(s) 904
MaeII ACGT 1 cut(s) 1193
MaeIII GTNAC 3 cut(s) 21, 959, 1155
MalI GATC 4 cut(s) 426, 530, 814, 1290
MboI GATC 4 cut(s) 424, 528, 812, 1288
MfeI CAATTG 1 cut(s) 540
MflI RGATCY 2 cut(s) 528, 1288
MhlI GDGCHC 2 cut(s) 955, 1013
MlsI TGGCCA 1 cut(s) 839
MluNI TGGCCA 1 cut(s) 839
MlyI GAGTC 2 cut(s) 508, 967
MmeI TCCRAC 1 cut(s) 623
Mox20I TGGCCA 1 cut(s) 839
MroI TCCGGA 1 cut(s) 1041
MscI TGGCCA 1 cut(s) 839
MseI TTAA 2 cut(s) 291, 656
MslI CAYNNNNRTG 1 cut(s) 1170
Msp20I TGGCCA 1 cut(s) 839
MspA1I CMGCKG 1 cut(s) 631
MspI CCGG 4 cut(s) 766, 955, 1042, 1292
MspR9I CCNGG 2 cut(s) 906, 955
MunI CAATTG 1 cut(s) 540
MvaI CCWGG 1 cut(s) 906
MvnI CGCG 2 cut(s) 588, 1015
MwoI GCNNNNNNNGC 4 cut(s) 446, 542, 787, 1362
NciI CCSGG 1 cut(s) 955
NdeII GATC 4 cut(s) 424, 528, 812, 1288
NlaIII CATG 2 cut(s) 739, 974
NlaIV GGNNCC 1 cut(s) 952
NmuCI GTSAC 3 cut(s) 21, 959, 1155
NsbI TGCGCA 1 cut(s) 635
OliI CACNNNNGTG 1 cut(s) 1170
PaeR7I CTCGAG 1 cut(s) 672
PcsI WCGNNNNNNNCGW 3 cut(s) 171, 670, 1019
PfeI GAWTC 3 cut(s) 182, 611, 1277
PkrI GCNGC 7 cut(s) 33, 108, 194, 451, 633, 1125, 1128
PleI GAGTC 2 cut(s) 508, 966
PpsI GAGTC 2 cut(s) 508, 966
Psp6I CCWGG 1 cut(s) 904
PspGI CCWGG 1 cut(s) 904
PspN4I GGNNCC 1 cut(s) 952
PstI CTGCAG 1 cut(s) 1367
PsuI RGATCY 2 cut(s) 528, 1288
RsaI GTAC 2 cut(s) 264, 1111
RsaNI GTAC 2 cut(s) 263, 1110
RseI CAYNNNNRTG 1 cut(s) 1170
SaqAI TTAA 2 cut(s) 291, 656
SatI GCNGC 7 cut(s) 32, 107, 193, 450, 632, 1124, 1127
Sau3AI GATC 4 cut(s) 424, 528, 812, 1288
SbfI CCTGCAGG 1 cut(s) 1367
SchI GAGTC 2 cut(s) 508, 967
ScrFI CCNGG 2 cut(s) 906, 955
SdaI CCTGCAGG 1 cut(s) 1367
SduI GDGCHC 2 cut(s) 955, 1013
SexAI ACCWGGT 1 cut(s) 904
SfaNI GCATC 7 cut(s) 166, 206, 305, 427, 545, 599, 845
SfcI CTRYAG 2 cut(s) 916, 1363
Sfr274I CTCGAG 1 cut(s) 672
SlaI CTCGAG 1 cut(s) 672
SmiMI CAYNNNNRTG 1 cut(s) 1170
SmlI CTYRAG 2 cut(s) 210, 672
SmoI CTYRAG 2 cut(s) 210, 672
Sse8387I CCTGCAGG 1 cut(s) 1367
SsiI CCGC 4 cut(s) 86, 629, 943, 1393
StyD4I CCNGG 2 cut(s) 904, 953
TaaI ACNGT 5 cut(s) 269, 307, 398, 564, 995
TaiI ACGT 1 cut(s) 1196
TaqI TCGA 7 cut(s) 82, 345, 517, 673, 811, 1022, 1148
TaqII GACCGA 1 cut(s) 1134
TatI WGTACW 1 cut(s) 262
TfiI GAWTC 3 cut(s) 182, 611, 1277
Tru1I TTAA 2 cut(s) 291, 656
Tru9I TTAA 2 cut(s) 291, 656
TscAI CASTG 6 cut(s) 272, 401, 685, 763, 865, 1164
TseFI GTSAC 3 cut(s) 21, 959, 1155
TseI GCWGC 7 cut(s) 31, 106, 192, 449, 631, 1123, 1126
Tsp45I GTSAC 3 cut(s) 21, 959, 1155
TspDTI ATGAA 7 cut(s) 60, 108, 174, 223, 402, 819, 1067
TspGWI ACGGA 3 cut(s) 242, 679, 909
TspRI CASTG 6 cut(s) 272, 401, 685, 763, 865, 1164
XapI RAATTY 6 cut(s) 224, 667, 745, 897, 1000, 1311
XhoI CTCGAG 1 cut(s) 672
ZraI GACGTC 1 cut(s) 1194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.