E3 ubiquitin-protein ligase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 963 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 597 |
| AccIII | TCCGGA | 2 cut(s) | 271, 834 |
| AciI | CCGC | 4 cut(s) | 136, 169, 751, 808 |
| AclWI | GGATC | 5 cut(s) | 104, 230, 334, 495, 508 |
| AcoI | YGGCCR | 1 cut(s) | 1171 |
| AcsI | RAATTY | 2 cut(s) | 454, 492 |
| AcuI | CTGAAG | 1 cut(s) | 1053 |
| AdeI | CACNNNGTG | 1 cut(s) | 209 |
| AfaI | GTAC | 3 cut(s) | 202, 245, 1155 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 597, 841 |
| AgsI | TTSAA | 4 cut(s) | 491, 497, 1077, 1098 |
| AjnI | CCWGG | 1 cut(s) | 800 |
| AluBI | AGCT | 7 cut(s) | 263, 305, 347, 422, 608, 820, 848 |
| AluI | AGCT | 7 cut(s) | 263, 305, 347, 422, 608, 820, 848 |
| Alw21I | GWGCWC | 1 cut(s) | 610 |
| Alw26I | GTCTC | 1 cut(s) | 1119 |
| AlwI | GGATC | 5 cut(s) | 104, 230, 334, 495, 508 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 635 |
| Aor13HI | TCCGGA | 2 cut(s) | 271, 834 |
| AoxI | GGCC | 3 cut(s) | 411, 920, 1171 |
| ApeKI | GCWGC | 5 cut(s) | 260, 419, 422, 933, 977 |
| ApoI | RAATTY | 2 cut(s) | 454, 492 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 544 |
| AspLEI | GCGC | 1 cut(s) | 567 |
| AsuHPI | GGTGA | 3 cut(s) | 569, 662, 685 |
| BalI | TGGCCA | 1 cut(s) | 1173 |
| BamHI | GGATCC | 1 cut(s) | 500 |
| BanII | GRGCYC | 1 cut(s) | 610 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1137, 1169 |
| Bbv12I | GWGCWC | 1 cut(s) | 610 |
| BbvI | GCAGC | 5 cut(s) | 272, 409, 431, 920, 964 |
| BccI | CCATC | 7 cut(s) | 115, 527, 591, 641, 1057, 1167, 1182 |
| BceAI | ACGGC | 1 cut(s) | 183 |
| BciT130I | CCWGG | 1 cut(s) | 802 |
| BciVI | GTATCC | 1 cut(s) | 1099 |
| BcoDI | GTCTC | 1 cut(s) | 1119 |
| BfaI | CTAG | 3 cut(s) | 92, 213, 777 |
| BfmI | CTRYAG | 4 cut(s) | 142, 417, 914, 934 |
| BfuI | GTATCC | 1 cut(s) | 1099 |
| BisI | GCNGC | 6 cut(s) | 170, 261, 420, 423, 934, 978 |
| BlsI | GCNGC | 6 cut(s) | 171, 262, 421, 424, 935, 979 |
| Bme1390I | CCNGG | 1 cut(s) | 802 |
| BmiI | GGNNCC | 3 cut(s) | 502, 519, 806 |
| BmrFI | CCNGG | 1 cut(s) | 802 |
| BmrI | ACTGGG | 1 cut(s) | 903 |
| BmsI | GCATC | 2 cut(s) | 238, 704 |
| BmuI | ACTGGG | 1 cut(s) | 903 |
| BsaJI | CCNNGG | 1 cut(s) | 1213 |
| BsaWI | WCCGGW | 2 cut(s) | 271, 834 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 597, 841 |
| Bse1I | ACTGG | 1 cut(s) | 909 |
| Bse3DI | GCAATG | 2 cut(s) | 83, 351 |
| BseAI | TCCGGA | 2 cut(s) | 271, 834 |
| BseBI | CCWGG | 1 cut(s) | 802 |
| BseDI | CCNNGG | 1 cut(s) | 1213 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 597, 841 |
| BseMI | GCAATG | 2 cut(s) | 83, 351 |
| BseNI | ACTGG | 1 cut(s) | 909 |
| BseRI | GAGGAG | 3 cut(s) | 475, 478, 530 |
| BseXI | GCAGC | 5 cut(s) | 272, 409, 431, 920, 964 |
| BsgI | GTGCAG | 3 cut(s) | 116, 963, 972 |
| BshFI | GGCC | 3 cut(s) | 413, 922, 1173 |
| BsiHKAI | GWGCWC | 1 cut(s) | 610 |
| BsiSI | CCGG | 2 cut(s) | 272, 835 |
| BslFI | GGGAC | 1 cut(s) | 924 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 597, 841 |
| BsmAI | GTCTC | 1 cut(s) | 1119 |
| BsmBI | CGTCTC | 1 cut(s) | 1119 |
| BsmFI | GGGAC | 1 cut(s) | 924 |
| BsmI | GAATGC | 5 cut(s) | 131, 155, 191, 646, 802 |
| BsnI | GGCC | 3 cut(s) | 413, 922, 1173 |
| Bsp1286I | GDGCHC | 1 cut(s) | 610 |
| Bsp13I | TCCGGA | 2 cut(s) | 271, 834 |
| Bsp143I | GATC | 6 cut(s) | 21, 96, 235, 339, 434, 500 |
| BspACI | CCGC | 4 cut(s) | 136, 169, 751, 808 |
| BspANI | GGCC | 3 cut(s) | 413, 922, 1173 |
| BspEI | TCCGGA | 2 cut(s) | 271, 834 |
| BspHI | TCATGA | 1 cut(s) | 310 |
| BspLI | GGNNCC | 3 cut(s) | 502, 519, 806 |
| BspMAI | CTGCAG | 3 cut(s) | 421, 918, 938 |
| BspPI | GGATC | 5 cut(s) | 104, 230, 334, 495, 508 |
| BsrDI | GCAATG | 2 cut(s) | 83, 351 |
| BsrI | ACTGG | 1 cut(s) | 909 |
| BssECI | CCNNGG | 1 cut(s) | 1213 |
| BssMI | GATC | 6 cut(s) | 21, 96, 235, 339, 434, 500 |
| Bst2UI | CCWGG | 1 cut(s) | 802 |
| Bst4CI | ACNGT | 5 cut(s) | 54, 118, 487, 791, 1214 |
| Bst6I | CTCTTC | 2 cut(s) | 288, 312 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 986 |
| BstC8I | GCNNGC | 5 cut(s) | 131, 196, 328, 729, 749 |
| BstDEI | CTNAG | 1 cut(s) | 816 |
| BstDSI | CCRYGG | 1 cut(s) | 1213 |
| BstHHI | GCGC | 1 cut(s) | 567 |
| BstKTI | GATC | 6 cut(s) | 24, 99, 238, 342, 437, 503 |
| BstMAI | GTCTC | 1 cut(s) | 1119 |
| BstMBI | GATC | 6 cut(s) | 21, 96, 235, 339, 434, 500 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 135, 195, 257, 353, 419, 986 |
| BstNI | CCWGG | 1 cut(s) | 802 |
| BstNSI | RCATGY | 2 cut(s) | 198, 751 |
| BstSCI | CCNGG | 1 cut(s) | 800 |
| BstSFI | CTRYAG | 4 cut(s) | 142, 417, 914, 934 |
| BstV1I | GCAGC | 5 cut(s) | 272, 409, 431, 920, 964 |
| BstX2I | RGATCY | 2 cut(s) | 339, 500 |
| BstYI | RGATCY | 2 cut(s) | 339, 500 |
| BsuI | GTATCC | 1 cut(s) | 1099 |
| BsuRI | GGCC | 3 cut(s) | 413, 922, 1173 |
| BtgI | CCRYGG | 1 cut(s) | 1213 |
| BtsI | GCAGTG | 3 cut(s) | 414, 989, 1109 |
| BtsIMutI | CAGTG | 4 cut(s) | 123, 414, 989, 1109 |
| Cac8I | GCNNGC | 5 cut(s) | 131, 196, 328, 729, 749 |
| CaiI | CAGNNNCTG | 1 cut(s) | 635 |
| CciI | TCATGA | 1 cut(s) | 310 |
| CfoI | GCGC | 1 cut(s) | 567 |
| Csp6I | GTAC | 3 cut(s) | 201, 244, 1154 |
| CviAII | CATG | 5 cut(s) | 166, 195, 311, 732, 748 |
| CviQI | GTAC | 3 cut(s) | 201, 244, 1154 |
| DdeI | CTNAG | 1 cut(s) | 816 |
| DpnI | GATC | 6 cut(s) | 23, 98, 237, 341, 436, 502 |
| DpnII | GATC | 6 cut(s) | 21, 96, 235, 339, 434, 500 |
| DraI | TTTAAA | 1 cut(s) | 1023 |
| DraIII | CACNNNGTG | 1 cut(s) | 209 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 963 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 963 |
| EaeI | YGGCCR | 1 cut(s) | 1171 |
| Eam1104I | CTCTTC | 2 cut(s) | 288, 312 |
| EarI | CTCTTC | 2 cut(s) | 288, 312 |
| Ecl136II | GAGCTC | 1 cut(s) | 608 |
| Eco147I | AGGCCT | 1 cut(s) | 922 |
| Eco24I | GRGCYC | 1 cut(s) | 610 |
| Eco32I | GATATC | 1 cut(s) | 868 |
| Eco53kI | GAGCTC | 1 cut(s) | 608 |
| Eco57I | CTGAAG | 1 cut(s) | 1053 |
| EcoICRI | GAGCTC | 1 cut(s) | 608 |
| EcoRII | CCWGG | 1 cut(s) | 800 |
| EcoRV | GATATC | 1 cut(s) | 868 |
| EcoT22I | ATGCAT | 1 cut(s) | 155 |
| EcoT38I | GRGCYC | 1 cut(s) | 610 |
| Esp3I | CGTCTC | 1 cut(s) | 1119 |
| FaeI | CATG | 5 cut(s) | 169, 198, 314, 735, 751 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 1190 |
| FaqI | GGGAC | 1 cut(s) | 924 |
| FatI | CATG | 5 cut(s) | 165, 194, 310, 731, 747 |
| Fnu4HI | GCNGC | 6 cut(s) | 170, 261, 420, 423, 934, 978 |
| FriOI | GRGCYC | 1 cut(s) | 610 |
| Fsp4HI | GCNGC | 6 cut(s) | 170, 261, 420, 423, 934, 978 |
| FspBI | CTAG | 3 cut(s) | 92, 213, 777 |
| GlaI | GCGC | 1 cut(s) | 566 |
| GluI | GCNGC | 6 cut(s) | 170, 261, 420, 423, 934, 978 |
| HaeIII | GGCC | 3 cut(s) | 413, 922, 1173 |
| HapII | CCGG | 2 cut(s) | 272, 835 |
| HhaI | GCGC | 1 cut(s) | 567 |
| Hin1II | CATG | 5 cut(s) | 169, 198, 314, 735, 751 |
| Hin6I | GCGC | 1 cut(s) | 565 |
| HinP1I | GCGC | 1 cut(s) | 565 |
| HincII | GTYRAC | 1 cut(s) | 1045 |
| HindII | GTYRAC | 1 cut(s) | 1045 |
| HindIII | AAGCTT | 1 cut(s) | 345 |
| HinfI | GANTC | 5 cut(s) | 61, 472, 545, 754, 1094 |
| HpaI | GTTAAC | 1 cut(s) | 1045 |
| HpaII | CCGG | 2 cut(s) | 272, 835 |
| HphI | GGTGA | 3 cut(s) | 569, 662, 685 |
| Hpy166II | GTNNAC | 3 cut(s) | 203, 676, 1045 |
| Hpy188I | TCNGA | 8 cut(s) | 58, 66, 240, 379, 505, 844, 1054, 1194 |
| Hpy188III | TCNNGA | 4 cut(s) | 272, 311, 719, 835 |
| Hpy8I | GTNNAC | 3 cut(s) | 203, 676, 1045 |
| Hpy99I | CGWCG | 2 cut(s) | 222, 372 |
| HpyAV | CCTTC | 3 cut(s) | 316, 462, 633 |
| HpyCH4III | ACNGT | 5 cut(s) | 54, 118, 487, 791, 1214 |
| HpyCH4IV | ACGT | 1 cut(s) | 39 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 135, 195, 257, 353, 419, 986 |
| HpyF3I | CTNAG | 1 cut(s) | 816 |
| HpySE526I | ACGT | 1 cut(s) | 39 |
| Hsp92II | CATG | 5 cut(s) | 169, 198, 314, 735, 751 |
| HspAI | GCGC | 1 cut(s) | 565 |
| Kpn2I | TCCGGA | 2 cut(s) | 271, 834 |
| KspAI | GTTAAC | 1 cut(s) | 1045 |
| Kzo9I | GATC | 6 cut(s) | 21, 96, 235, 339, 434, 500 |
| LmnI | GCTCC | 2 cut(s) | 517, 605 |
| Lsp1109I | GCAGC | 5 cut(s) | 272, 409, 431, 920, 964 |
| LweI | GCATC | 2 cut(s) | 238, 704 |
| MaeI | CTAG | 3 cut(s) | 92, 213, 777 |
| MaeII | ACGT | 1 cut(s) | 39 |
| MaeIII | GTNAC | 1 cut(s) | 443 |
| MalI | GATC | 6 cut(s) | 23, 98, 237, 341, 436, 502 |
| MboI | GATC | 6 cut(s) | 21, 96, 235, 339, 434, 500 |
| MboII | GAAGA | 5 cut(s) | 305, 326, 329, 543, 1207 |
| MflI | RGATCY | 2 cut(s) | 339, 500 |
| MhlI | GDGCHC | 1 cut(s) | 610 |
| MlsI | TGGCCA | 1 cut(s) | 1173 |
| MluCI | AATT | 6 cut(s) | 6, 255, 299, 454, 492, 1133 |
| MluNI | TGGCCA | 1 cut(s) | 1173 |
| MlyI | GAGTC | 1 cut(s) | 763 |
| MmeI | TCCRAC | 1 cut(s) | 934 |
| MnlI | CCTC | 9 cut(s) | 283, 289, 453, 456, 508, 530, 664, 884, 912 |
| Mox20I | TGGCCA | 1 cut(s) | 1173 |
| Mph1103I | ATGCAT | 1 cut(s) | 155 |
| MroI | TCCGGA | 2 cut(s) | 271, 834 |
| MroXI | GAANNNNTTC | 1 cut(s) | 544 |
| MscI | TGGCCA | 1 cut(s) | 1173 |
| MseI | TTAA | 5 cut(s) | 254, 1022, 1044, 1121, 1208 |
| Msp20I | TGGCCA | 1 cut(s) | 1173 |
| MspA1I | CMGCKG | 1 cut(s) | 422 |
| MspI | CCGG | 2 cut(s) | 272, 835 |
| MspR9I | CCNGG | 1 cut(s) | 802 |
| Mva1269I | GAATGC | 5 cut(s) | 131, 155, 191, 646, 802 |
| MvaI | CCWGG | 1 cut(s) | 802 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 135, 195, 257, 353, 419, 986 |
| NdeII | GATC | 6 cut(s) | 21, 96, 235, 339, 434, 500 |
| NlaIII | CATG | 5 cut(s) | 169, 198, 314, 735, 751 |
| NlaIV | GGNNCC | 3 cut(s) | 502, 519, 806 |
| NsiI | ATGCAT | 1 cut(s) | 155 |
| NspI | RCATGY | 2 cut(s) | 198, 751 |
| PaeI | GCATGC | 2 cut(s) | 198, 751 |
| PagI | TCATGA | 1 cut(s) | 310 |
| PceI | AGGCCT | 1 cut(s) | 922 |
| PctI | GAATGC | 5 cut(s) | 131, 155, 191, 646, 802 |
| PdmI | GAANNNNTTC | 1 cut(s) | 544 |
| PfeI | GAWTC | 4 cut(s) | 61, 472, 545, 1094 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 597 |
| PkrI | GCNGC | 6 cut(s) | 171, 262, 421, 424, 935, 979 |
| PleI | GAGTC | 1 cut(s) | 762 |
| PpsI | GAGTC | 1 cut(s) | 762 |
| Psp124BI | GAGCTC | 1 cut(s) | 610 |
| Psp6I | CCWGG | 1 cut(s) | 800 |
| PspGI | CCWGG | 1 cut(s) | 800 |
| PspN4I | GGNNCC | 3 cut(s) | 502, 519, 806 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 888, 920 |
| PstI | CTGCAG | 3 cut(s) | 421, 918, 938 |
| PstNI | CAGNNNCTG | 1 cut(s) | 635 |
| PsuI | RGATCY | 2 cut(s) | 339, 500 |
| PvuII | CAGCTG | 1 cut(s) | 422 |
| RsaI | GTAC | 3 cut(s) | 202, 245, 1155 |
| RsaNI | GTAC | 3 cut(s) | 201, 244, 1154 |
| SacI | GAGCTC | 1 cut(s) | 610 |
| SaqAI | TTAA | 5 cut(s) | 254, 1022, 1044, 1121, 1208 |
| SatI | GCNGC | 6 cut(s) | 170, 261, 420, 423, 934, 978 |
| Sau3AI | GATC | 6 cut(s) | 21, 96, 235, 339, 434, 500 |
| SchI | GAGTC | 1 cut(s) | 763 |
| ScrFI | CCNGG | 1 cut(s) | 802 |
| SduI | GDGCHC | 1 cut(s) | 610 |
| SfaNI | GCATC | 2 cut(s) | 238, 704 |
| SfcI | CTRYAG | 4 cut(s) | 142, 417, 914, 934 |
| SphI | GCATGC | 2 cut(s) | 198, 751 |
| Sse9I | AATT | 6 cut(s) | 6, 255, 299, 454, 492, 1133 |
| SseBI | AGGCCT | 1 cut(s) | 922 |
| SsiI | CCGC | 4 cut(s) | 136, 169, 751, 808 |
| SspMI | CTAG | 3 cut(s) | 92, 213, 777 |
| SstI | GAGCTC | 1 cut(s) | 610 |
| StuI | AGGCCT | 1 cut(s) | 922 |
| StyD4I | CCNGG | 1 cut(s) | 800 |
| TaaI | ACNGT | 5 cut(s) | 54, 118, 487, 791, 1214 |
| TaiI | ACGT | 1 cut(s) | 42 |
| TaqI | TCGA | 2 cut(s) | 367, 610 |
| TasI | AATT | 6 cut(s) | 6, 255, 299, 454, 492, 1133 |
| TauI | GCSGC | 1 cut(s) | 172 |
| TfiI | GAWTC | 4 cut(s) | 61, 472, 545, 1094 |
| Tru1I | TTAA | 5 cut(s) | 254, 1022, 1044, 1121, 1208 |
| Tru9I | TTAA | 5 cut(s) | 254, 1022, 1044, 1121, 1208 |
| TscAI | CASTG | 4 cut(s) | 123, 421, 996, 1116 |
| TseI | GCWGC | 5 cut(s) | 260, 419, 422, 933, 977 |
| TspDTI | ATGAA | 9 cut(s) | 198, 299, 327, 537, 615, 672, 909, 1017, 1146 |
| TspRI | CASTG | 4 cut(s) | 123, 421, 996, 1116 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 597 |
| XapI | RAATTY | 2 cut(s) | 454, 492 |
| XceI | RCATGY | 2 cut(s) | 198, 751 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1166 |
| XmnI | GAANNNNTTC | 1 cut(s) | 544 |
| XspI | CTAG | 3 cut(s) | 92, 213, 777 |
| Zsp2I | ATGCAT | 1 cut(s) | 155 |