Rh5AG068800

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
5783219 .. 5789183
5965 bp
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UTR
Exon/CDS
Intron
Rh5AG068800.1

Sequence Viewer

Length: 1221 bp
ATGCTAATTTTTTTTTCCTTGATCTTTATACACAGATACGTTGCAGTAAGACTGTCAGAGATTCGGAAAGAAGTGCAATGCCCTATCTGTCTAGGGATCATTAGGAAAACAAGAACAGTGATGGAATGCCTGCACCGCTTCTGTAGGGAATGCATTGACAAGTCCATGCGGCTTGGGAACAATGAATGCCCTGCATGCCGTACACATTGTGCTAGTCGTCGCTCTTTGAGAGATGATCCGAAGTACGATGCCTTAATTGCAGCTATTTATCCGGATATTGACAAGTATGAGGAAGAGGAATTAGCTTTTCATGAAGAAGAGAAGGCTCGCAATAAGCAGATCCAAGCTTCCATTGCCCAGACATTTCGACGACAATCCGAAGCACTTGGTAGGAAGCGAACAACAGCAAAGGCCACTGCAGCTGCATTTATGAGATCACAGGGTAACTATAAAAATTTGAGGAGGAGAAGGAATCATAAAAATACTGTTGAAATTCAAGGATCCGATGACAATGAGGAGCCAAATGGTAATGATGGAGGAAAAGATTCATCTTCTGGTGATGAGCGCAAAGAACCAAGACCAAAAAGACCCAAAAGATGGGCAGGAGCTCGATATTATCAGCCTTCATCAGCAACTGCGAATGCAGATGGTGATGATGAAAATGATTATGAGGTGAACAGAGAAGTTATGGGTGCATCTGTGGGGTTTGTTGGCAGTCCAGACAGGCTTGCATGGGGTAAAGGTGGCATGCGGAGTCATACACGATATGGCAGTTCTAGTGGTGCGAACGGTAAGAATGCCAGGAACCGCCTTTCTAAGCTGGTGGATTATCTCCGGAACTCGGAAGCTAATGATAAAGGGCTGGATATCCACCTCCTACTTGTTTCTTTTGATGAACAAAGAATACCCAGTCTGCAGAGGCCTTATCTTTGCTGCAGTCCCACCCTGTCAGTTGGACAACTATGTCAGTATGTTGCTGCACAAACTGCACTGCAACCTGATGAAGTGCAAATATACTTTTTAAAAGAACTACAAGCCAAAGTTAACCCATCAGACCCTACAAATGCTTCAGTTTCAACATCTGGTGTTTTAGATTCAAGCAAGGATACACTGCTTCTGTTAAGAGACGATGAATTATTGGGAGAAGTCCAAGTACGCCATCTCATTCGTGGCCATCTGCTTTTGGCGTATCAGAAGAAGTGGAACTTAAACCGTGGCTGA

Protein Analysis

406

Amino Acids

45.94

Weight (kDa)

9.07

Isoelectric Point (pI)

51.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_2 PF13923 26 - 66 1.2e-11 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 26 - 67 1.2e-07 Ring finger domain
zf-C3HC4 PF00097 27 - 66 8.6e-10 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 963
AccB7I CCANNNNNTGG 1 cut(s) 597
AccIII TCCGGA 2 cut(s) 271, 834
AciI CCGC 4 cut(s) 136, 169, 751, 808
AclWI GGATC 5 cut(s) 104, 230, 334, 495, 508
AcoI YGGCCR 1 cut(s) 1171
AcsI RAATTY 2 cut(s) 454, 492
AcuI CTGAAG 1 cut(s) 1053
AdeI CACNNNGTG 1 cut(s) 209
AfaI GTAC 3 cut(s) 202, 245, 1155
AfiI CCNNNNNNNGG 2 cut(s) 597, 841
AgsI TTSAA 4 cut(s) 491, 497, 1077, 1098
AjnI CCWGG 1 cut(s) 800
AluBI AGCT 7 cut(s) 263, 305, 347, 422, 608, 820, 848
AluI AGCT 7 cut(s) 263, 305, 347, 422, 608, 820, 848
Alw21I GWGCWC 1 cut(s) 610
Alw26I GTCTC 1 cut(s) 1119
AlwI GGATC 5 cut(s) 104, 230, 334, 495, 508
AlwNI CAGNNNCTG 1 cut(s) 635
Aor13HI TCCGGA 2 cut(s) 271, 834
AoxI GGCC 3 cut(s) 411, 920, 1171
ApeKI GCWGC 5 cut(s) 260, 419, 422, 933, 977
ApoI RAATTY 2 cut(s) 454, 492
Asp700I GAANNNNTTC 1 cut(s) 544
AspLEI GCGC 1 cut(s) 567
AsuHPI GGTGA 3 cut(s) 569, 662, 685
BalI TGGCCA 1 cut(s) 1173
BamHI GGATCC 1 cut(s) 500
BanII GRGCYC 1 cut(s) 610
BarI GAAGNNNNNNTAC 2 cut(s) 1137, 1169
Bbv12I GWGCWC 1 cut(s) 610
BbvI GCAGC 5 cut(s) 272, 409, 431, 920, 964
BccI CCATC 7 cut(s) 115, 527, 591, 641, 1057, 1167, 1182
BceAI ACGGC 1 cut(s) 183
BciT130I CCWGG 1 cut(s) 802
BciVI GTATCC 1 cut(s) 1099
BcoDI GTCTC 1 cut(s) 1119
BfaI CTAG 3 cut(s) 92, 213, 777
BfmI CTRYAG 4 cut(s) 142, 417, 914, 934
BfuI GTATCC 1 cut(s) 1099
BisI GCNGC 6 cut(s) 170, 261, 420, 423, 934, 978
BlsI GCNGC 6 cut(s) 171, 262, 421, 424, 935, 979
Bme1390I CCNGG 1 cut(s) 802
BmiI GGNNCC 3 cut(s) 502, 519, 806
BmrFI CCNGG 1 cut(s) 802
BmrI ACTGGG 1 cut(s) 903
BmsI GCATC 2 cut(s) 238, 704
BmuI ACTGGG 1 cut(s) 903
BsaJI CCNNGG 1 cut(s) 1213
BsaWI WCCGGW 2 cut(s) 271, 834
Bsc4I CCNNNNNNNGG 2 cut(s) 597, 841
Bse1I ACTGG 1 cut(s) 909
Bse3DI GCAATG 2 cut(s) 83, 351
BseAI TCCGGA 2 cut(s) 271, 834
BseBI CCWGG 1 cut(s) 802
BseDI CCNNGG 1 cut(s) 1213
BseLI CCNNNNNNNGG 2 cut(s) 597, 841
BseMI GCAATG 2 cut(s) 83, 351
BseNI ACTGG 1 cut(s) 909
BseRI GAGGAG 3 cut(s) 475, 478, 530
BseXI GCAGC 5 cut(s) 272, 409, 431, 920, 964
BsgI GTGCAG 3 cut(s) 116, 963, 972
BshFI GGCC 3 cut(s) 413, 922, 1173
BsiHKAI GWGCWC 1 cut(s) 610
BsiSI CCGG 2 cut(s) 272, 835
BslFI GGGAC 1 cut(s) 924
BslI CCNNNNNNNGG 2 cut(s) 597, 841
BsmAI GTCTC 1 cut(s) 1119
BsmBI CGTCTC 1 cut(s) 1119
BsmFI GGGAC 1 cut(s) 924
BsmI GAATGC 5 cut(s) 131, 155, 191, 646, 802
BsnI GGCC 3 cut(s) 413, 922, 1173
Bsp1286I GDGCHC 1 cut(s) 610
Bsp13I TCCGGA 2 cut(s) 271, 834
Bsp143I GATC 6 cut(s) 21, 96, 235, 339, 434, 500
BspACI CCGC 4 cut(s) 136, 169, 751, 808
BspANI GGCC 3 cut(s) 413, 922, 1173
BspEI TCCGGA 2 cut(s) 271, 834
BspHI TCATGA 1 cut(s) 310
BspLI GGNNCC 3 cut(s) 502, 519, 806
BspMAI CTGCAG 3 cut(s) 421, 918, 938
BspPI GGATC 5 cut(s) 104, 230, 334, 495, 508
BsrDI GCAATG 2 cut(s) 83, 351
BsrI ACTGG 1 cut(s) 909
BssECI CCNNGG 1 cut(s) 1213
BssMI GATC 6 cut(s) 21, 96, 235, 339, 434, 500
Bst2UI CCWGG 1 cut(s) 802
Bst4CI ACNGT 5 cut(s) 54, 118, 487, 791, 1214
Bst6I CTCTTC 2 cut(s) 288, 312
BstAPI GCANNNNNTGC 1 cut(s) 986
BstC8I GCNNGC 5 cut(s) 131, 196, 328, 729, 749
BstDEI CTNAG 1 cut(s) 816
BstDSI CCRYGG 1 cut(s) 1213
BstHHI GCGC 1 cut(s) 567
BstKTI GATC 6 cut(s) 24, 99, 238, 342, 437, 503
BstMAI GTCTC 1 cut(s) 1119
BstMBI GATC 6 cut(s) 21, 96, 235, 339, 434, 500
BstMWI GCNNNNNNNGC 6 cut(s) 135, 195, 257, 353, 419, 986
BstNI CCWGG 1 cut(s) 802
BstNSI RCATGY 2 cut(s) 198, 751
BstSCI CCNGG 1 cut(s) 800
BstSFI CTRYAG 4 cut(s) 142, 417, 914, 934
BstV1I GCAGC 5 cut(s) 272, 409, 431, 920, 964
BstX2I RGATCY 2 cut(s) 339, 500
BstYI RGATCY 2 cut(s) 339, 500
BsuI GTATCC 1 cut(s) 1099
BsuRI GGCC 3 cut(s) 413, 922, 1173
BtgI CCRYGG 1 cut(s) 1213
BtsI GCAGTG 3 cut(s) 414, 989, 1109
BtsIMutI CAGTG 4 cut(s) 123, 414, 989, 1109
Cac8I GCNNGC 5 cut(s) 131, 196, 328, 729, 749
CaiI CAGNNNCTG 1 cut(s) 635
CciI TCATGA 1 cut(s) 310
CfoI GCGC 1 cut(s) 567
Csp6I GTAC 3 cut(s) 201, 244, 1154
CviAII CATG 5 cut(s) 166, 195, 311, 732, 748
CviQI GTAC 3 cut(s) 201, 244, 1154
DdeI CTNAG 1 cut(s) 816
DpnI GATC 6 cut(s) 23, 98, 237, 341, 436, 502
DpnII GATC 6 cut(s) 21, 96, 235, 339, 434, 500
DraI TTTAAA 1 cut(s) 1023
DraIII CACNNNGTG 1 cut(s) 209
DrdI GACNNNNNNGTC 1 cut(s) 963
DseDI GACNNNNNNGTC 1 cut(s) 963
EaeI YGGCCR 1 cut(s) 1171
Eam1104I CTCTTC 2 cut(s) 288, 312
EarI CTCTTC 2 cut(s) 288, 312
Ecl136II GAGCTC 1 cut(s) 608
Eco147I AGGCCT 1 cut(s) 922
Eco24I GRGCYC 1 cut(s) 610
Eco32I GATATC 1 cut(s) 868
Eco53kI GAGCTC 1 cut(s) 608
Eco57I CTGAAG 1 cut(s) 1053
EcoICRI GAGCTC 1 cut(s) 608
EcoRII CCWGG 1 cut(s) 800
EcoRV GATATC 1 cut(s) 868
EcoT22I ATGCAT 1 cut(s) 155
EcoT38I GRGCYC 1 cut(s) 610
Esp3I CGTCTC 1 cut(s) 1119
FaeI CATG 5 cut(s) 169, 198, 314, 735, 751
FalI AAGNNNNNCTT 1 cut(s) 1190
FaqI GGGAC 1 cut(s) 924
FatI CATG 5 cut(s) 165, 194, 310, 731, 747
Fnu4HI GCNGC 6 cut(s) 170, 261, 420, 423, 934, 978
FriOI GRGCYC 1 cut(s) 610
Fsp4HI GCNGC 6 cut(s) 170, 261, 420, 423, 934, 978
FspBI CTAG 3 cut(s) 92, 213, 777
GlaI GCGC 1 cut(s) 566
GluI GCNGC 6 cut(s) 170, 261, 420, 423, 934, 978
HaeIII GGCC 3 cut(s) 413, 922, 1173
HapII CCGG 2 cut(s) 272, 835
HhaI GCGC 1 cut(s) 567
Hin1II CATG 5 cut(s) 169, 198, 314, 735, 751
Hin6I GCGC 1 cut(s) 565
HinP1I GCGC 1 cut(s) 565
HincII GTYRAC 1 cut(s) 1045
HindII GTYRAC 1 cut(s) 1045
HindIII AAGCTT 1 cut(s) 345
HinfI GANTC 5 cut(s) 61, 472, 545, 754, 1094
HpaI GTTAAC 1 cut(s) 1045
HpaII CCGG 2 cut(s) 272, 835
HphI GGTGA 3 cut(s) 569, 662, 685
Hpy166II GTNNAC 3 cut(s) 203, 676, 1045
Hpy188I TCNGA 8 cut(s) 58, 66, 240, 379, 505, 844, 1054, 1194
Hpy188III TCNNGA 4 cut(s) 272, 311, 719, 835
Hpy8I GTNNAC 3 cut(s) 203, 676, 1045
Hpy99I CGWCG 2 cut(s) 222, 372
HpyAV CCTTC 3 cut(s) 316, 462, 633
HpyCH4III ACNGT 5 cut(s) 54, 118, 487, 791, 1214
HpyCH4IV ACGT 1 cut(s) 39
HpyF10VI GCNNNNNNNGC 6 cut(s) 135, 195, 257, 353, 419, 986
HpyF3I CTNAG 1 cut(s) 816
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 5 cut(s) 169, 198, 314, 735, 751
HspAI GCGC 1 cut(s) 565
Kpn2I TCCGGA 2 cut(s) 271, 834
KspAI GTTAAC 1 cut(s) 1045
Kzo9I GATC 6 cut(s) 21, 96, 235, 339, 434, 500
LmnI GCTCC 2 cut(s) 517, 605
Lsp1109I GCAGC 5 cut(s) 272, 409, 431, 920, 964
LweI GCATC 2 cut(s) 238, 704
MaeI CTAG 3 cut(s) 92, 213, 777
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 443
MalI GATC 6 cut(s) 23, 98, 237, 341, 436, 502
MboI GATC 6 cut(s) 21, 96, 235, 339, 434, 500
MboII GAAGA 5 cut(s) 305, 326, 329, 543, 1207
MflI RGATCY 2 cut(s) 339, 500
MhlI GDGCHC 1 cut(s) 610
MlsI TGGCCA 1 cut(s) 1173
MluCI AATT 6 cut(s) 6, 255, 299, 454, 492, 1133
MluNI TGGCCA 1 cut(s) 1173
MlyI GAGTC 1 cut(s) 763
MmeI TCCRAC 1 cut(s) 934
MnlI CCTC 9 cut(s) 283, 289, 453, 456, 508, 530, 664, 884, 912
Mox20I TGGCCA 1 cut(s) 1173
Mph1103I ATGCAT 1 cut(s) 155
MroI TCCGGA 2 cut(s) 271, 834
MroXI GAANNNNTTC 1 cut(s) 544
MscI TGGCCA 1 cut(s) 1173
MseI TTAA 5 cut(s) 254, 1022, 1044, 1121, 1208
Msp20I TGGCCA 1 cut(s) 1173
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 2 cut(s) 272, 835
MspR9I CCNGG 1 cut(s) 802
Mva1269I GAATGC 5 cut(s) 131, 155, 191, 646, 802
MvaI CCWGG 1 cut(s) 802
MwoI GCNNNNNNNGC 6 cut(s) 135, 195, 257, 353, 419, 986
NdeII GATC 6 cut(s) 21, 96, 235, 339, 434, 500
NlaIII CATG 5 cut(s) 169, 198, 314, 735, 751
NlaIV GGNNCC 3 cut(s) 502, 519, 806
NsiI ATGCAT 1 cut(s) 155
NspI RCATGY 2 cut(s) 198, 751
PaeI GCATGC 2 cut(s) 198, 751
PagI TCATGA 1 cut(s) 310
PceI AGGCCT 1 cut(s) 922
PctI GAATGC 5 cut(s) 131, 155, 191, 646, 802
PdmI GAANNNNTTC 1 cut(s) 544
PfeI GAWTC 4 cut(s) 61, 472, 545, 1094
PflMI CCANNNNNTGG 1 cut(s) 597
PkrI GCNGC 6 cut(s) 171, 262, 421, 424, 935, 979
PleI GAGTC 1 cut(s) 762
PpsI GAGTC 1 cut(s) 762
Psp124BI GAGCTC 1 cut(s) 610
Psp6I CCWGG 1 cut(s) 800
PspGI CCWGG 1 cut(s) 800
PspN4I GGNNCC 3 cut(s) 502, 519, 806
PsrI GAACNNNNNNTAC 2 cut(s) 888, 920
PstI CTGCAG 3 cut(s) 421, 918, 938
PstNI CAGNNNCTG 1 cut(s) 635
PsuI RGATCY 2 cut(s) 339, 500
PvuII CAGCTG 1 cut(s) 422
RsaI GTAC 3 cut(s) 202, 245, 1155
RsaNI GTAC 3 cut(s) 201, 244, 1154
SacI GAGCTC 1 cut(s) 610
SaqAI TTAA 5 cut(s) 254, 1022, 1044, 1121, 1208
SatI GCNGC 6 cut(s) 170, 261, 420, 423, 934, 978
Sau3AI GATC 6 cut(s) 21, 96, 235, 339, 434, 500
SchI GAGTC 1 cut(s) 763
ScrFI CCNGG 1 cut(s) 802
SduI GDGCHC 1 cut(s) 610
SfaNI GCATC 2 cut(s) 238, 704
SfcI CTRYAG 4 cut(s) 142, 417, 914, 934
SphI GCATGC 2 cut(s) 198, 751
Sse9I AATT 6 cut(s) 6, 255, 299, 454, 492, 1133
SseBI AGGCCT 1 cut(s) 922
SsiI CCGC 4 cut(s) 136, 169, 751, 808
SspMI CTAG 3 cut(s) 92, 213, 777
SstI GAGCTC 1 cut(s) 610
StuI AGGCCT 1 cut(s) 922
StyD4I CCNGG 1 cut(s) 800
TaaI ACNGT 5 cut(s) 54, 118, 487, 791, 1214
TaiI ACGT 1 cut(s) 42
TaqI TCGA 2 cut(s) 367, 610
TasI AATT 6 cut(s) 6, 255, 299, 454, 492, 1133
TauI GCSGC 1 cut(s) 172
TfiI GAWTC 4 cut(s) 61, 472, 545, 1094
Tru1I TTAA 5 cut(s) 254, 1022, 1044, 1121, 1208
Tru9I TTAA 5 cut(s) 254, 1022, 1044, 1121, 1208
TscAI CASTG 4 cut(s) 123, 421, 996, 1116
TseI GCWGC 5 cut(s) 260, 419, 422, 933, 977
TspDTI ATGAA 9 cut(s) 198, 299, 327, 537, 615, 672, 909, 1017, 1146
TspRI CASTG 4 cut(s) 123, 421, 996, 1116
Van91I CCANNNNNTGG 1 cut(s) 597
XapI RAATTY 2 cut(s) 454, 492
XceI RCATGY 2 cut(s) 198, 751
XcmI CCANNNNNNNNNTGG 1 cut(s) 1166
XmnI GAANNNNTTC 1 cut(s) 544
XspI CTAG 3 cut(s) 92, 213, 777
Zsp2I ATGCAT 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.