Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001286

Physical Location & Seq

Genomic Coordinates Reverse (-)

29389263 .. 29393251

Gene Structure 3989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28800.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGCCGGCACAGAAGCGCACCCATGAGGCCATGGAAGATGATCCTCCGCAGAACCACCGCGAAAACAGCCACGAAACGCCGCAAGACGAAGAGGAGTCCGATCGAAGCCCGTCTCAGAGCACCGAAGAGAAAGACGAATTTGTCATAGTGAAATTGTCAGAAATTCGGAAAGAAGTCCAGTGCCCCATCTGTTTAGGGATCATTCGGAAAACAAGGACAGTGATGGAATGCCTGCATCGCTTCTGCAGGGAATGCATTGACAAGTCCATGCGCCTGGGGAACAACGAATGCCCTGCCTGCCGCACCCATTGTGCAAGTCGTCGCTCTTTGAGAGATGACCCAAATTACGATTCCTTAATTGCAGCTATATATCCGGATATTGACAAGTATGAGGAAGAGGAATTGGCTTTTCATGAAGAGGAGAAGGCTCGCAATAAGCAGATCCAAGCTTCCATTGCCCAGACATTTCGACGACAAACCGAGGCACTAGGAAGGAAACGAACAGCTAAAGCCACTGCAGCTGCATTTATGAGGAGATCACGGGGTAGCTATCGAAATGCAAGGGGGAGAAGGAGCTATAGAAATGTTGCTGAACATCAAGGGTCCAATGACAATGAGGATGTAAATGGTGATGATGGCGGTAGAGATTTATCATCGGGTGATGAGCGCACAGAACCAAGACCGAAGAGATCCAAAAGATGGAGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0001709 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010073 GO:0010074 GO:0010076 GO:0010077 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019827 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031519 GO:0032501 GO:0032502 GO:0032991 GO:0035102 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045165 GO:0045814 GO:0045892 GO:0045934 GO:0048507 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0098727 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2

Protein Analysis

237

Amino Acids

27.35

Weight (kDa)

7.61

Isoelectric Point (pI)

82.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44280 AT5G44280 AT5G44280
fragaria_vesca	FvH4_3g08840 FvH4_3g08840 FvH4_3g08840 FvH4_3g08840 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540
malus_domestica	MD05G1312000.v1.1 MD09G1244000.v1.1 MD10G1291500.v1.1 MD17G1235900.v1.1
prunus_persica	Prupe.3G139900_v2.0.a1 Prupe.3G139900_v2.0.a1 Prupe.3G139900_v2.0.a1 Prupe.3G139900_v2.0.a1 Prupe.3G139900_v2.0.a1 Prupe.4G050700_v2.0.a1 Prupe.4G050700_v2.0.a1 Prupe.4G050700_v2.0.a1
pyrus_communis	pycom05g28800 pycom09g16250 pycom10g24370
rosa_chinensis	RchiOBHm_Chr2g0127611 RchiOBHm_Chr5g0008911
rosa_laevigata	RLG00000018950 RLG00000031615
rosa_multiflora	Rmu_co8349609.1_g000001 Rmu_sc0004677.1_g000011 Rmu_ssc0000200.1_g000019
rosa_roxburghii	Rroxscaffold_1G00067100 Rroxscaffold_1G00067720 Rroxscaffold_2G00116570
rosa_rugosa	Rorug02G0272500 Rorug02G0272500 Rorug02G0272500 Rorug02G0272500 Rorug04G0440100
rosa_samantha	Rh2AG324500 Rh2BG333800 Rh2CG312000 Rh2DG352000 Rh5AG068800 Rh5BG065500 Rh5CG076700 Rh5DG064500
rosa_wichuraiana	Rw2G026350 Rw5G006440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	140
AccB7I	CCANNNNNTGG	1 cut(s)	699
AccII	CGCG	1 cut(s)	60
AccIII	TCCGGA	1 cut(s)	373
AciI	CCGC	5 cut(s)	47, 58, 80, 301, 639
AclWI	GGATC	4 cut(s)	35, 206, 436, 684
AcsI	RAATTY	2 cut(s)	137, 162
AfiI	CCNNNNNNNGG	1 cut(s)	699
AjnI	CCWGG	1 cut(s)	273
AjuI	GAANNNNNNNTTGG	2 cut(s)	334, 366
AluBI	AGCT	6 cut(s)	365, 449, 506, 521, 549, 576
AluI	AGCT	6 cut(s)	365, 449, 506, 521, 549, 576
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	4 cut(s)	35, 206, 436, 684
Aor13HI	TCCGGA	1 cut(s)	373
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	3 cut(s)	362, 518, 521
ApoI	RAATTY	2 cut(s)	137, 162
AspLEI	GCGC	3 cut(s)	18, 273, 669
AspS9I	GGNCC	1 cut(s)	603
AsuHPI	GGTGA	2 cut(s)	641, 671
AvaII	GGWCC	1 cut(s)	603
BaeGI	GKGCMC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	3 cut(s)	374, 508, 530
BccI	CCATC	4 cut(s)	194, 217, 629, 693
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BciT130I	CCWGG	1 cut(s)	275
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	488
BfmI	CTRYAG	3 cut(s)	244, 516, 577
BisI	GCNGC	5 cut(s)	80, 301, 363, 519, 522
BlsI	GCNGC	5 cut(s)	81, 302, 364, 520, 523
Bme1390I	CCNGG	1 cut(s)	275
Bme18I	GGWCC	1 cut(s)	603
BmgT120I	GGNCC	1 cut(s)	603
BmiI	GGNNCC	1 cut(s)	604
BmrFI	CCNGG	1 cut(s)	275
BmsI	GCATC	1 cut(s)	244
BsaJI	CCNNGG	3 cut(s)	30, 274, 480
BsaWI	WCCGGW	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	1 cut(s)	699
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	178
Bse3DI	GCAATG	1 cut(s)	453
BseAI	TCCGGA	1 cut(s)	373
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	3 cut(s)	30, 274, 480
BseGI	GGATG	1 cut(s)	625
BseLI	CCNNNNNNNGG	1 cut(s)	699
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	178
BseRI	GAGGAG	3 cut(s)	107, 434, 547
BseSI	GKGCMC	1 cut(s)	185
BseXI	GCAGC	3 cut(s)	374, 508, 530
Bsh1236I	CGCG	1 cut(s)	60
Bsh1285I	CGRYCG	1 cut(s)	103
BshFI	GGCC	1 cut(s)	29
BsiEI	CGRYCG	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	122
BsiSI	CCGG	2 cut(s)	5, 374
BslI	CCNNNNNNNGG	1 cut(s)	699
BsmAI	GTCTC	1 cut(s)	117
BsmBI	CGTCTC	1 cut(s)	117
BsmI	GAATGC	3 cut(s)	233, 257, 293
BsnI	GGCC	1 cut(s)	29
Bsp1286I	GDGCHC	2 cut(s)	122, 185
Bsp13I	TCCGGA	1 cut(s)	373
Bsp143I	GATC	6 cut(s)	40, 100, 198, 441, 536, 689
Bsp19I	CCATGG	1 cut(s)	30
BspACI	CCGC	5 cut(s)	47, 58, 80, 301, 639
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	127
BspEI	TCCGGA	1 cut(s)	373
BspFNI	CGCG	1 cut(s)	60
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	1 cut(s)	604
BspMAI	CTGCAG	2 cut(s)	248, 520
BspPI	GGATC	4 cut(s)	35, 206, 436, 684
BsrDI	GCAATG	1 cut(s)	453
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	178
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	3 cut(s)	30, 274, 480
BssMI	GATC	6 cut(s)	40, 100, 198, 441, 536, 689
BssT1I	CCWWGG	1 cut(s)	30
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	1 cut(s)	220
Bst6I	CTCTTC	5 cut(s)	84, 120, 390, 411, 680
BstAPI	GCANNNNNTGC	1 cut(s)	252
BstC8I	GCNNGC	4 cut(s)	6, 233, 298, 430
BstDEI	CTNAG	1 cut(s)	114
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	625
BstFNI	CGCG	1 cut(s)	60
BstHHI	GCGC	3 cut(s)	18, 273, 669
BstKTI	GATC	6 cut(s)	43, 103, 201, 444, 539, 692
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	6 cut(s)	40, 100, 198, 441, 536, 689
BstMCI	CGRYCG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	6 cut(s)	66, 237, 252, 297, 455, 518
BstNI	CCWGG	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	273
BstSFI	CTRYAG	3 cut(s)	244, 516, 577
BstSLI	GKGCMC	1 cut(s)	185
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	3 cut(s)	374, 508, 530
BstX2I	RGATCY	2 cut(s)	441, 689
BstXI	CCANNNNNNTGG	1 cut(s)	274
BstYI	RGATCY	2 cut(s)	441, 689
BsuRI	GGCC	1 cut(s)	29
BtgI	CCRYGG	1 cut(s)	30
BtgZI	GCGATG	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	625
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	3 cut(s)	185, 225, 513
Cac8I	GCNNGC	4 cut(s)	6, 233, 298, 430
CciI	TCATGA	1 cut(s)	412
CfoI	GCGC	3 cut(s)	18, 273, 669
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	603
CviAII	CATG	4 cut(s)	23, 31, 268, 413
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	6 cut(s)	42, 102, 200, 443, 538, 691
DpnII	GATC	6 cut(s)	40, 100, 198, 441, 536, 689
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
Eam1104I	CTCTTC	5 cut(s)	84, 120, 390, 411, 680
EarI	CTCTTC	5 cut(s)	84, 120, 390, 411, 680
Eco130I	CCWWGG	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	603
EcoRII	CCWGG	1 cut(s)	273
EcoT14I	CCWWGG	1 cut(s)	30
EcoT22I	ATGCAT	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	30
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	4 cut(s)	26, 34, 271, 416
FatI	CATG	4 cut(s)	22, 30, 267, 412
Fnu4HI	GCNGC	5 cut(s)	80, 301, 363, 519, 522
FokI	GGATG	1 cut(s)	632
Fsp4HI	GCNGC	5 cut(s)	80, 301, 363, 519, 522
FspBI	CTAG	1 cut(s)	488
GlaI	GCGC	3 cut(s)	17, 272, 668
GluI	GCNGC	5 cut(s)	80, 301, 363, 519, 522
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	2 cut(s)	5, 374
HhaI	GCGC	3 cut(s)	18, 273, 669
Hin1II	CATG	4 cut(s)	26, 34, 271, 416
Hin6I	GCGC	3 cut(s)	16, 271, 667
HinP1I	GCGC	3 cut(s)	16, 271, 667
HindIII	AAGCTT	1 cut(s)	447
HinfI	GANTC	2 cut(s)	95, 350
HpaII	CCGG	2 cut(s)	5, 374
HphI	GGTGA	2 cut(s)	641, 671
Hpy188I	TCNGA	5 cut(s)	100, 117, 160, 168, 207
Hpy188III	TCNNGA	2 cut(s)	374, 413
Hpy99I	CGWCG	2 cut(s)	324, 474
HpyAV	CCTTC	3 cut(s)	418, 486, 564
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4V	TGCA	8 cut(s)	235, 246, 255, 314, 362, 518, 524, 560
HpyF10VI	GCNNNNNNNGC	6 cut(s)	66, 237, 252, 297, 455, 518
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	4 cut(s)	26, 34, 271, 416
HspAI	GCGC	3 cut(s)	16, 271, 667
Kpn2I	TCCGGA	1 cut(s)	373
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	6 cut(s)	40, 100, 198, 441, 536, 689
LmnI	GCTCC	1 cut(s)	573
Lsp1109I	GCAGC	3 cut(s)	374, 508, 530
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	1 cut(s)	488
MalI	GATC	6 cut(s)	42, 102, 200, 443, 538, 691
MboI	GATC	6 cut(s)	40, 100, 198, 441, 536, 689
MboII	GAAGA	6 cut(s)	47, 101, 137, 407, 428, 697
MflI	RGATCY	2 cut(s)	441, 689
MhlI	GDGCHC	2 cut(s)	122, 185
MluCI	AATT	6 cut(s)	137, 152, 162, 343, 357, 401
MlyI	GAGTC	1 cut(s)	104
Mph1103I	ATGCAT	1 cut(s)	257
MroI	TCCGGA	1 cut(s)	373
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	1 cut(s)	356
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	2 cut(s)	5, 374
MspR9I	CCNGG	1 cut(s)	275
Mva1269I	GAATGC	3 cut(s)	233, 257, 293
MvaI	CCWGG	1 cut(s)	275
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	6 cut(s)	66, 237, 252, 297, 455, 518
NaeI	GCCGGC	1 cut(s)	6
NcoI	CCATGG	1 cut(s)	30
NdeII	GATC	6 cut(s)	40, 100, 198, 441, 536, 689
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	4 cut(s)	26, 34, 271, 416
NlaIV	GGNNCC	1 cut(s)	604
NsiI	ATGCAT	1 cut(s)	257
PagI	TCATGA	1 cut(s)	412
PctI	GAATGC	3 cut(s)	233, 257, 293
PdiI	GCCGGC	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	350
PflMI	CCANNNNNTGG	1 cut(s)	699
PkrI	GCNGC	5 cut(s)	81, 302, 364, 520, 523
Ple19I	CGATCG	1 cut(s)	103
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	604
PspPI	GGNCC	1 cut(s)	603
PstI	CTGCAG	2 cut(s)	248, 520
PsuI	RGATCY	2 cut(s)	441, 689
PvuI	CGATCG	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	521
SaqAI	TTAA	1 cut(s)	356
SatI	GCNGC	5 cut(s)	80, 301, 363, 519, 522
Sau3AI	GATC	6 cut(s)	40, 100, 198, 441, 536, 689
Sau96I	GGNCC	1 cut(s)	603
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	275
SduI	GDGCHC	2 cut(s)	122, 185
SetI	ASST	6 cut(s)	367, 451, 508, 523, 551, 578
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	3 cut(s)	244, 516, 577
SinI	GGWCC	1 cut(s)	603
Sse9I	AATT	6 cut(s)	137, 152, 162, 343, 357, 401
SsiI	CCGC	5 cut(s)	47, 58, 80, 301, 639
SspMI	CTAG	1 cut(s)	488
StyD4I	CCNGG	1 cut(s)	273
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	220
TaqI	TCGA	3 cut(s)	103, 469, 553
TaqII	GACCGA	1 cut(s)	697
TasI	AATT	6 cut(s)	137, 152, 162, 343, 357, 401
TauI	GCSGC	2 cut(s)	82, 303
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TscAI	CASTG	3 cut(s)	185, 225, 520
TseI	GCWGC	3 cut(s)	362, 518, 521
TspDTI	ATGAA	2 cut(s)	401, 429
TspRI	CASTG	3 cut(s)	185, 225, 520
Van91I	CCANNNNNTGG	1 cut(s)	699
VpaK11BI	GGWCC	1 cut(s)	603
XapI	RAATTY	2 cut(s)	137, 162
XspI	CTAG	1 cut(s)	488
Zsp2I	ATGCAT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.