Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001286

Physical Location & Seq

Genomic Coordinates Forward (+)

5521514 .. 5526763

Gene Structure 5250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG064500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGCCGGCACAGAAGCGTGGCTTCGAGGCCGCGGAGGACGGTGATCCTGTGGAGAACCACCGCGAGAACGGCCTTGAGGAGCCGCAGGACGGAGAAGAGTCCGATCGGAGCCGGAGCCCCGAGCCGAGTGAGGACGAGAAGGACGACCAGAAACCCGAATACGTTGCAGTAAGACTGTCAGAGATTCGGAAAGAAGTGCAATGCCCTATCTGTCTAGGGATCATTAGGAAAACAAGAACAGTGATGGAATGCCTGCACCGCTTCTGTAGGGAATGCATTGACAAGTCCATGCGACTTGGGAACAATGAATGCCCTGCATGCCGTACACATTGTGCTAGTCGTCGCTCTTTGAGAGATGATCCGAAGTACGATGCCTTAATTGCAGCTATTTATCCGGATATTGACAAGTATGAGGAAGAGGAATTAGCTTTTCATGAAGAAGAGAAGGCTCGCAATAAGCAGATCCAAGCTTCCATTGCCCAGACATTTCGACGACAATCTGAAGCACTTGGTAGGAAGCGAACAACAGCAAAGGCCACTGCAGCTGCATTTATGAGATCACAGGGTAACTATAAAAATTTGAGGAGGAGAAGGAATCATAAAAATACTGTTGAAATTCAAGGATCCGATGACAATGAGGAGGCAAATGGTAATGATGGAGGAAGAGATTCATCTTCTGGTGATGAGCGCAAAGAACCAAGACCAAAAAGACCCAAAAGATGGGCAGGAACTCGATATTATCAGCCTTCATCAGCAACTGCGAATGCAGATGGTGATGATGAAAATGATTATGAGGTGAACAGAGAAGTTATGGGTGCATCTGTGGGGTTTGTTCGCAGTCCAGAAAGGCTTGCATGGGGTAAAGGTGGCATGCGGAGTCATACACGATATGGCAGTTCTAGTGGTGCGAATGGTAAGAGTGCCAGGAACCGCCTTTCTAAGTTGGTGGATTATCTCCGGAACTCGGAAGCTAATGATAAAGGGCTGGATATCCACCTCCTACTTGTTTCTTTTGATGAACAAAGAATACCCAGTCTGCAGAGGCCTTATCTTTGCTGCAGTCCCACCCTGTCAGTTGGACAACTATGTCAGTATGTTGCTGCACAAACTGCACTGCAACCTGATGAAGTGCAAATATACTTTTTAAAAGAACTACAAGCCAAAGTGAACCCATCAGACCCTACAAATGCTTCAGTTTCAACATCTGGTGTTTTAGATTCAAGCAAGGATACACTGCTTCTGTTAAGAGACGATGAATTATTGGGAGAAGTCCAAGTACGCCATCTCATTCGTGGCCATCTGCTTTTGGCGTATCAGAAGAAGTGGAACTTAAACCGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0001709 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010073 GO:0010074 GO:0010076 GO:0010077 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019827 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031519 GO:0032501 GO:0032502 GO:0032991 GO:0035102 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045165 GO:0045814 GO:0045892 GO:0045934 GO:0048507 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0098727 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2

Protein Analysis

447

Amino Acids

50.52

Weight (kDa)

6.78

Isoelectric Point (pI)

59.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_2	PF13923	67 - 107	1.4e-11	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	67 - 108	1.3e-07	Ring finger domain
zf-C3HC4	PF00097	68 - 107	9.8e-10	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44280 AT5G44280 AT5G44280
fragaria_vesca	FvH4_3g08840 FvH4_3g08840 FvH4_3g08840 FvH4_3g08840 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540 FvH4_6g26540
malus_domestica	MD05G1312000.v1.1 MD09G1244000.v1.1 MD10G1291500.v1.1 MD17G1235900.v1.1
prunus_persica	Prupe.3G139900_v2.0.a1 Prupe.3G139900_v2.0.a1 Prupe.3G139900_v2.0.a1 Prupe.3G139900_v2.0.a1 Prupe.3G139900_v2.0.a1 Prupe.4G050700_v2.0.a1 Prupe.4G050700_v2.0.a1 Prupe.4G050700_v2.0.a1
pyrus_communis	pycom05g28800 pycom09g16250 pycom10g24370
rosa_chinensis	RchiOBHm_Chr2g0127611 RchiOBHm_Chr5g0008911
rosa_laevigata	RLG00000018950 RLG00000031615
rosa_multiflora	Rmu_co8349609.1_g000001 Rmu_sc0004677.1_g000011 Rmu_ssc0000200.1_g000019
rosa_roxburghii	Rroxscaffold_1G00067100 Rroxscaffold_1G00067720 Rroxscaffold_2G00116570
rosa_rugosa	Rorug02G0272500 Rorug02G0272500 Rorug02G0272500 Rorug02G0272500 Rorug04G0440100
rosa_samantha	Rh2AG324500 Rh2BG333800 Rh2CG312000 Rh2DG352000 Rh5AG068800 Rh5BG065500 Rh5CG076700 Rh5DG064500
rosa_wichuraiana	Rw2G026350 Rw5G006440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1086
AccB7I	CCANNNNNTGG	1 cut(s)	720
AccII	CGCG	2 cut(s)	32, 63
AccIII	TCCGGA	2 cut(s)	394, 957
AciI	CCGC	7 cut(s)	30, 32, 61, 83, 259, 874, 931
AclWI	GGATC	6 cut(s)	38, 227, 353, 457, 618, 631
AcoI	YGGCCR	1 cut(s)	1294
AcsI	RAATTY	2 cut(s)	577, 615
AcuI	CTGAAG	2 cut(s)	522, 1176
AdeI	CACNNNGTG	1 cut(s)	332
AfaI	GTAC	3 cut(s)	325, 368, 1278
AfiI	CCNNNNNNNGG	3 cut(s)	89, 720, 964
AgsI	TTSAA	4 cut(s)	614, 620, 1200, 1221
AjnI	CCWGG	1 cut(s)	923
AluBI	AGCT	5 cut(s)	386, 428, 470, 545, 971
AluI	AGCT	5 cut(s)	386, 428, 470, 545, 971
Alw26I	GTCTC	1 cut(s)	1242
AlwI	GGATC	6 cut(s)	38, 227, 353, 457, 618, 631
AlwNI	CAGNNNCTG	1 cut(s)	758
Ama87I	CYCGRG	1 cut(s)	119
Aor13HI	TCCGGA	2 cut(s)	394, 957
AoxI	GGCC	5 cut(s)	27, 70, 534, 1043, 1294
ApeKI	GCWGC	5 cut(s)	383, 542, 545, 1056, 1100
ApoI	RAATTY	2 cut(s)	577, 615
Asp700I	GAANNNNTTC	1 cut(s)	667
AspLEI	GCGC	1 cut(s)	690
AsuHPI	GGTGA	4 cut(s)	53, 692, 785, 808
AvaI	CYCGRG	1 cut(s)	119
BalI	TGGCCA	1 cut(s)	1296
BamHI	GGATCC	1 cut(s)	623
BanII	GRGCYC	1 cut(s)	119
BarI	GAAGNNNNNNTAC	2 cut(s)	1260, 1292
BbvI	GCAGC	5 cut(s)	395, 532, 554, 1043, 1087
BccI	CCATC	7 cut(s)	238, 650, 714, 764, 1180, 1290, 1305
BceAI	ACGGC	2 cut(s)	85, 306
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BciT130I	CCWGG	1 cut(s)	925
BciVI	GTATCC	1 cut(s)	1222
BcoDI	GTCTC	1 cut(s)	1242
BfaI	CTAG	3 cut(s)	215, 336, 900
BfmI	CTRYAG	4 cut(s)	265, 540, 1037, 1057
BfuI	GTATCC	1 cut(s)	1222
BisI	GCNGC	7 cut(s)	30, 83, 384, 543, 546, 1057, 1101
BlsI	GCNGC	7 cut(s)	31, 84, 385, 544, 547, 1058, 1102
Bme1390I	CCNGG	1 cut(s)	925
BmeT110I	CYCGRG	1 cut(s)	119
BmiI	GGNNCC	5 cut(s)	81, 110, 116, 625, 929
BmrFI	CCNGG	1 cut(s)	925
BmrI	ACTGGG	1 cut(s)	1026
BmsI	GCATC	2 cut(s)	361, 827
BmuI	ACTGGG	1 cut(s)	1026
BpuEI	CTTGAG	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	30, 1336
BsaWI	WCCGGW	2 cut(s)	394, 957
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 720, 964
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	1032
Bse3DI	GCAATG	2 cut(s)	206, 474
BseAI	TCCGGA	2 cut(s)	394, 957
BseBI	CCWGG	1 cut(s)	925
BseDI	CCNNGG	2 cut(s)	30, 1336
BseLI	CCNNNNNNNGG	3 cut(s)	89, 720, 964
BseMI	GCAATG	2 cut(s)	206, 474
BseNI	ACTGG	1 cut(s)	1032
BseRI	GAGGAG	4 cut(s)	92, 598, 601, 653
BseXI	GCAGC	5 cut(s)	395, 532, 554, 1043, 1087
BsgI	GTGCAG	3 cut(s)	239, 1086, 1095
Bsh1236I	CGCG	2 cut(s)	32, 63
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	5 cut(s)	29, 72, 536, 1045, 1296
BsiEI	CGRYCG	1 cut(s)	106
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	4 cut(s)	5, 112, 395, 958
BslFI	GGGAC	1 cut(s)	1047
BslI	CCNNNNNNNGG	3 cut(s)	89, 720, 964
BsmAI	GTCTC	1 cut(s)	1242
BsmBI	CGTCTC	1 cut(s)	1242
BsmFI	GGGAC	1 cut(s)	1047
BsmI	GAATGC	4 cut(s)	254, 278, 314, 769
BsnI	GGCC	5 cut(s)	29, 72, 536, 1045, 1296
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp13I	TCCGGA	2 cut(s)	394, 957
Bsp143I	GATC	7 cut(s)	43, 103, 219, 358, 462, 557, 623
BspACI	CCGC	7 cut(s)	30, 32, 61, 83, 259, 874, 931
BspANI	GGCC	5 cut(s)	29, 72, 536, 1045, 1296
BspEI	TCCGGA	2 cut(s)	394, 957
BspFNI	CGCG	2 cut(s)	32, 63
BspHI	TCATGA	1 cut(s)	433
BspLI	GGNNCC	5 cut(s)	81, 110, 116, 625, 929
BspMAI	CTGCAG	3 cut(s)	544, 1041, 1061
BspPI	GGATC	6 cut(s)	38, 227, 353, 457, 618, 631
BsrDI	GCAATG	2 cut(s)	206, 474
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	1032
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	30, 1336
BssMI	GATC	7 cut(s)	43, 103, 219, 358, 462, 557, 623
Bst2UI	CCWGG	1 cut(s)	925
Bst4CI	ACNGT	5 cut(s)	41, 177, 241, 610, 1337
Bst6I	CTCTTC	4 cut(s)	90, 411, 435, 658
BstAPI	GCANNNNNTGC	1 cut(s)	1109
BstC8I	GCNNGC	6 cut(s)	6, 254, 319, 451, 852, 872
BstDEI	CTNAG	1 cut(s)	939
BstDSI	CCRYGG	2 cut(s)	30, 1336
BstFNI	CGCG	2 cut(s)	32, 63
BstHHI	GCGC	1 cut(s)	690
BstKTI	GATC	7 cut(s)	46, 106, 222, 361, 465, 560, 626
BstMAI	GTCTC	1 cut(s)	1242
BstMBI	GATC	7 cut(s)	43, 103, 219, 358, 462, 557, 623
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	7 cut(s)	69, 258, 318, 380, 476, 542, 1109
BstNI	CCWGG	1 cut(s)	925
BstNSI	RCATGY	2 cut(s)	321, 874
BstSCI	CCNGG	1 cut(s)	923
BstSFI	CTRYAG	4 cut(s)	265, 540, 1037, 1057
BstUI	CGCG	2 cut(s)	32, 63
BstV1I	GCAGC	5 cut(s)	395, 532, 554, 1043, 1087
BstX2I	RGATCY	2 cut(s)	462, 623
BstYI	RGATCY	2 cut(s)	462, 623
BsuI	GTATCC	1 cut(s)	1222
BsuRI	GGCC	5 cut(s)	29, 72, 536, 1045, 1296
BtgI	CCRYGG	2 cut(s)	30, 1336
BtsI	GCAGTG	3 cut(s)	537, 1112, 1232
BtsIMutI	CAGTG	4 cut(s)	246, 537, 1112, 1232
Cac8I	GCNNGC	6 cut(s)	6, 254, 319, 451, 852, 872
CaiI	CAGNNNCTG	1 cut(s)	758
CciI	TCATGA	1 cut(s)	433
CfoI	GCGC	1 cut(s)	690
Cfr10I	RCCGGY	1 cut(s)	4
Cfr42I	CCGCGG	1 cut(s)	33
Csp6I	GTAC	3 cut(s)	324, 367, 1277
CviAII	CATG	5 cut(s)	289, 318, 434, 855, 871
CviQI	GTAC	3 cut(s)	324, 367, 1277
DdeI	CTNAG	1 cut(s)	939
DpnI	GATC	7 cut(s)	45, 105, 221, 360, 464, 559, 625
DpnII	GATC	7 cut(s)	43, 103, 219, 358, 462, 557, 623
DraI	TTTAAA	1 cut(s)	1146
DraIII	CACNNNGTG	1 cut(s)	332
DrdI	GACNNNNNNGTC	1 cut(s)	1086
DseDI	GACNNNNNNGTC	1 cut(s)	1086
EaeI	YGGCCR	1 cut(s)	1294
Eam1104I	CTCTTC	4 cut(s)	90, 411, 435, 658
EarI	CTCTTC	4 cut(s)	90, 411, 435, 658
Eco147I	AGGCCT	1 cut(s)	1045
Eco24I	GRGCYC	1 cut(s)	119
Eco32I	GATATC	1 cut(s)	991
Eco57I	CTGAAG	2 cut(s)	522, 1176
Eco88I	CYCGRG	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	923
EcoRV	GATATC	1 cut(s)	991
EcoT22I	ATGCAT	1 cut(s)	278
EcoT38I	GRGCYC	1 cut(s)	119
Esp3I	CGTCTC	1 cut(s)	1242
FaeI	CATG	5 cut(s)	292, 321, 437, 858, 874
FalI	AAGNNNNNCTT	2 cut(s)	37, 1313
FaqI	GGGAC	1 cut(s)	1047
FatI	CATG	5 cut(s)	288, 317, 433, 854, 870
Fnu4HI	GCNGC	7 cut(s)	30, 83, 384, 543, 546, 1057, 1101
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	7 cut(s)	30, 83, 384, 543, 546, 1057, 1101
FspBI	CTAG	3 cut(s)	215, 336, 900
GlaI	GCGC	1 cut(s)	689
GluI	GCNGC	7 cut(s)	30, 83, 384, 543, 546, 1057, 1101
HaeIII	GGCC	5 cut(s)	29, 72, 536, 1045, 1296
HapII	CCGG	4 cut(s)	5, 112, 395, 958
HhaI	GCGC	1 cut(s)	690
Hin1II	CATG	5 cut(s)	292, 321, 437, 858, 874
Hin6I	GCGC	1 cut(s)	688
HinP1I	GCGC	1 cut(s)	688
HindIII	AAGCTT	1 cut(s)	468
HinfI	GANTC	6 cut(s)	98, 184, 595, 668, 877, 1217
HpaII	CCGG	4 cut(s)	5, 112, 395, 958
HphI	GGTGA	4 cut(s)	53, 692, 785, 808
Hpy166II	GTNNAC	3 cut(s)	326, 799, 1168
Hpy188III	TCNNGA	4 cut(s)	395, 434, 842, 958
Hpy8I	GTNNAC	3 cut(s)	326, 799, 1168
Hpy99I	CGWCG	2 cut(s)	345, 495
HpyAV	CCTTC	4 cut(s)	133, 439, 585, 756
HpyCH4III	ACNGT	5 cut(s)	41, 177, 241, 610, 1337
HpyCH4IV	ACGT	1 cut(s)	162
HpyF10VI	GCNNNNNNNGC	7 cut(s)	69, 258, 318, 380, 476, 542, 1109
HpyF3I	CTNAG	1 cut(s)	939
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	5 cut(s)	292, 321, 437, 858, 874
HspAI	GCGC	1 cut(s)	688
Kpn2I	TCCGGA	2 cut(s)	394, 957
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
KspI	CCGCGG	1 cut(s)	33
Kzo9I	GATC	7 cut(s)	43, 103, 219, 358, 462, 557, 623
LmnI	GCTCC	3 cut(s)	79, 108, 114
Lsp1109I	GCAGC	5 cut(s)	395, 532, 554, 1043, 1087
LweI	GCATC	2 cut(s)	361, 827
MaeI	CTAG	3 cut(s)	215, 336, 900
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	566
MalI	GATC	7 cut(s)	45, 105, 221, 360, 464, 559, 625
MboI	GATC	7 cut(s)	43, 103, 219, 358, 462, 557, 623
MboII	GAAGA	7 cut(s)	107, 428, 449, 452, 666, 675, 1330
MflI	RGATCY	2 cut(s)	462, 623
MhlI	GDGCHC	1 cut(s)	119
MlsI	TGGCCA	1 cut(s)	1296
MluCI	AATT	5 cut(s)	378, 422, 577, 615, 1256
MluNI	TGGCCA	1 cut(s)	1296
MlyI	GAGTC	2 cut(s)	107, 886
MmeI	TCCRAC	1 cut(s)	1057
Mox20I	TGGCCA	1 cut(s)	1296
Mph1103I	ATGCAT	1 cut(s)	278
MroI	TCCGGA	2 cut(s)	394, 957
MroNI	GCCGGC	1 cut(s)	4
MroXI	GAANNNNTTC	1 cut(s)	667
MscI	TGGCCA	1 cut(s)	1296
MseI	TTAA	4 cut(s)	377, 1145, 1244, 1331
Msp20I	TGGCCA	1 cut(s)	1296
MspA1I	CMGCKG	2 cut(s)	32, 545
MspI	CCGG	4 cut(s)	5, 112, 395, 958
MspR9I	CCNGG	1 cut(s)	925
Mva1269I	GAATGC	4 cut(s)	254, 278, 314, 769
MvaI	CCWGG	1 cut(s)	925
MvnI	CGCG	2 cut(s)	32, 63
MwoI	GCNNNNNNNGC	7 cut(s)	69, 258, 318, 380, 476, 542, 1109
NaeI	GCCGGC	1 cut(s)	6
NdeII	GATC	7 cut(s)	43, 103, 219, 358, 462, 557, 623
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	5 cut(s)	292, 321, 437, 858, 874
NlaIV	GGNNCC	5 cut(s)	81, 110, 116, 625, 929
NmeAIII	GCCGAG	1 cut(s)	150
NsiI	ATGCAT	1 cut(s)	278
NspI	RCATGY	2 cut(s)	321, 874
PaeI	GCATGC	2 cut(s)	321, 874
PagI	TCATGA	1 cut(s)	433
PceI	AGGCCT	1 cut(s)	1045
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PctI	GAATGC	4 cut(s)	254, 278, 314, 769
PdiI	GCCGGC	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	667
PfeI	GAWTC	4 cut(s)	184, 595, 668, 1217
PflMI	CCANNNNNTGG	1 cut(s)	720
PkrI	GCNGC	7 cut(s)	31, 84, 385, 544, 547, 1058, 1102
Ple19I	CGATCG	1 cut(s)	106
PleI	GAGTC	2 cut(s)	106, 885
PpsI	GAGTC	2 cut(s)	106, 885
Psp6I	CCWGG	1 cut(s)	923
PspGI	CCWGG	1 cut(s)	923
PspN4I	GGNNCC	5 cut(s)	81, 110, 116, 625, 929
PsrI	GAACNNNNNNTAC	2 cut(s)	1011, 1043
PstI	CTGCAG	3 cut(s)	544, 1041, 1061
PstNI	CAGNNNCTG	1 cut(s)	758
PsuI	RGATCY	2 cut(s)	462, 623
PvuI	CGATCG	1 cut(s)	106
PvuII	CAGCTG	1 cut(s)	545
RsaI	GTAC	3 cut(s)	325, 368, 1278
RsaNI	GTAC	3 cut(s)	324, 367, 1277
SacII	CCGCGG	1 cut(s)	33
SaqAI	TTAA	4 cut(s)	377, 1145, 1244, 1331
SatI	GCNGC	7 cut(s)	30, 83, 384, 543, 546, 1057, 1101
Sau3AI	GATC	7 cut(s)	43, 103, 219, 358, 462, 557, 623
SchI	GAGTC	2 cut(s)	107, 886
ScrFI	CCNGG	1 cut(s)	925
SduI	GDGCHC	1 cut(s)	119
SfaNI	GCATC	2 cut(s)	361, 827
SfcI	CTRYAG	4 cut(s)	265, 540, 1037, 1057
Sfr303I	CCGCGG	1 cut(s)	33
SgrBI	CCGCGG	1 cut(s)	33
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SphI	GCATGC	2 cut(s)	321, 874
Sse9I	AATT	5 cut(s)	378, 422, 577, 615, 1256
SseBI	AGGCCT	1 cut(s)	1045
SsiI	CCGC	7 cut(s)	30, 32, 61, 83, 259, 874, 931
SspMI	CTAG	3 cut(s)	215, 336, 900
StuI	AGGCCT	1 cut(s)	1045
StyD4I	CCNGG	1 cut(s)	923
TaaI	ACNGT	5 cut(s)	41, 177, 241, 610, 1337
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	3 cut(s)	24, 490, 733
TasI	AATT	5 cut(s)	378, 422, 577, 615, 1256
TauI	GCSGC	2 cut(s)	32, 85
TfiI	GAWTC	4 cut(s)	184, 595, 668, 1217
Tru1I	TTAA	4 cut(s)	377, 1145, 1244, 1331
Tru9I	TTAA	4 cut(s)	377, 1145, 1244, 1331
TscAI	CASTG	4 cut(s)	246, 544, 1119, 1239
TseI	GCWGC	5 cut(s)	383, 542, 545, 1056, 1100
TspDTI	ATGAA	9 cut(s)	321, 422, 450, 660, 738, 795, 1032, 1140, 1269
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	4 cut(s)	246, 544, 1119, 1239
Van91I	CCANNNNNTGG	1 cut(s)	720
XapI	RAATTY	2 cut(s)	577, 615
XceI	RCATGY	2 cut(s)	321, 874
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1289
XmnI	GAANNNNTTC	1 cut(s)	667
XspI	CTAG	3 cut(s)	215, 336, 900
Zsp2I	ATGCAT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.