RLG00000018950

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
43362897 .. 43369599
6703 bp
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UTR
Exon/CDS
Intron
RLM00000018950

Sequence Viewer

Length: 1272 bp
ATGCCTGCCCAGAAGCGTTCTTTGCCGGACAACCTCACCGACGATGACGACGACAACCCCACACCTCACCACCGCCACCGCCCCAAGCAATCTCGACCCCAAGATGAACTCCTACAACAACAACAACAACCACAAGAGCAACAAGGAGTCGCAGTAGTAGAACAACAACAACAACAACAAGAGGAGGAGGAAGATGAAGAAGAAAACGACGACGTCGAAGAAGAAGAAGAAGATGAGGAATACGATCGAGATGAAGTTGACGATTATGACGGAAGCCCATCCTCTACCTCTCAACAAAACCCCGAATTTGTACTTGTACAACTGGCAGATATTCGTAAAGACGTACACTGCCCAATATGTCTTGGGATTATTAAGAAGACACGGACTGTAATGGAATGCCTACACAGGTTTTGCAGGGAATGCATCGACAAGTCAATGCGAATGGGGAACAATGAGTGCCCTGCATGCCGCACACACTGTGCCAGTCGACGGTCTTTGAGAGATGATCCAAATTATGATGCCCTAATTGCAACATTATATCCAGATATTGAGAAATATGAGGAGCAGGAATTGGCTTTCCATGAAGAGGAGAGGACTCGAAATGAGCAGATACAAGCATCAATTGCCCAAATATTCCAACGACAATCAGAAGCTTTAATCAAGAGACGCTCACTTGGCAAAGATACCCAAGATGCATATAATATGAGATCCCTGCGCAATAATCGGAGTGGTTTCCGAAGGAGAAGAAACTCTCAAGCCACTGAACTCCAAGGGTTTGAAGACAATGAGGATGAAAATGACACTAGTAACATGGGCACAAAATCGCCTTCAGCTGAAGAGAGACATACGGAAGTGAGGCCAAGACGGCTAAGAAGACGGACAGGATTTCGATCATCTCAGCCTTCATCATCTGTGACCAATTCAAATGGAGGATGCACTGAAAATGATGTAGAAGTGAGCCGAGAGAACAGGGGAATTTCACCGGGTCTTGTGTGGAGCTCTGAAATGCTTGCTTGGGGCCGGGGTGGTGCTCGGAGTCACACCCGGCATGGCATTGCAAGCGGTTGCAGCAATAAGAGTTCTCGAAGCACTCGCTTATCAAAGTTGGTCGATTACCTTCGGAACCTCAAGGAAGATAATGATGAGTTAGATGTTCATCTCATGCTTATTTCTTTGGATAAAAGATGCACACCAAACTTGCAGCAGCCGCACCTTTGCTGTAGGCCGAGTTTGTCAGTCAAGCACCTTTGTGAAGTAAGATTTTTTTCCTGA

Protein Analysis

424

Amino Acids

48.9

Weight (kDa)

5.26

Isoelectric Point (pI)

87.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 116 - 157 8.5e-08 Ring finger domain
zf-C3HC4_2 PF13923 117 - 156 2.1e-11 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 117 - 156 2.8e-10 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 216
Acc16I TGCGCA 1 cut(s) 716
AccI GTMKAC 1 cut(s) 487
AciI CCGC 5 cut(s) 73, 79, 469, 1062, 1208
AclWI GGATC 2 cut(s) 500, 702
AcsI RAATTY 2 cut(s) 305, 975
AcuI CTGAAG 2 cut(s) 813, 855
AcyI GRCGYC 1 cut(s) 213
AdeI CACNNNGTG 1 cut(s) 479
AfaI GTAC 3 cut(s) 312, 318, 345
AfiI CCNNNNNNNGG 2 cut(s) 489, 586
AgsI TTSAA 2 cut(s) 779, 924
AhlI ACTAGT 1 cut(s) 803
AleI CACNNNNGTG 1 cut(s) 1248
AluBI AGCT 3 cut(s) 653, 833, 999
AluI AGCT 3 cut(s) 653, 833, 999
Alw21I GWGCWC 2 cut(s) 1001, 1033
Alw26I GTCTC 2 cut(s) 658, 835
AlwI GGATC 2 cut(s) 500, 702
AoxI GGCC 3 cut(s) 857, 1018, 1223
ApeKI GCWGC 3 cut(s) 1068, 1201, 1204
ApoI RAATTY 2 cut(s) 305, 975
AspLEI GCGC 1 cut(s) 717
AspS9I GGNCC 1 cut(s) 1018
AsuC2I CCSGG 3 cut(s) 984, 1022, 1045
AsuHPI GGTGA 3 cut(s) 28, 59, 972
BaeGI GKGCMC 2 cut(s) 461, 818
BanII GRGCYC 1 cut(s) 1001
BbsI GAAGAC 3 cut(s) 383, 786, 880
Bbv12I GWGCWC 2 cut(s) 1001, 1033
BbvI GCAGC 3 cut(s) 1080, 1213, 1216
BccI CCATC 1 cut(s) 286
BceAI ACGGC 1 cut(s) 881
BcnI CCSGG 3 cut(s) 984, 1022, 1045
BcoDI GTCTC 2 cut(s) 658, 835
BcuI ACTAGT 1 cut(s) 803
BfaI CTAG 1 cut(s) 804
BfmI CTRYAG 1 cut(s) 1219
BglI GCCNNNNNGGC 1 cut(s) 865
BisI GCNGC 5 cut(s) 469, 1069, 1202, 1205, 1208
BlsI GCNGC 5 cut(s) 470, 1070, 1203, 1206, 1209
Bme1390I CCNGG 3 cut(s) 984, 1022, 1045
BmgT120I GGNCC 1 cut(s) 1018
BmiI GGNNCC 2 cut(s) 1019, 1124
BmrFI CCNGG 3 cut(s) 984, 1022, 1045
BmsI GCATC 6 cut(s) 432, 508, 626, 682, 923, 1175
BpiI GAAGAC 3 cut(s) 383, 786, 880
BpuEI CTTGAG 2 cut(s) 738, 1112
BpuMI CCSGG 3 cut(s) 984, 1022, 1045
BsaBI GATNNNNATC 2 cut(s) 889, 1155
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 769, 1021
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
Bsc4I CCNNNNNNNGG 2 cut(s) 489, 586
Bse1I ACTGG 2 cut(s) 327, 483
Bse3DI GCAATG 1 cut(s) 1053
Bse8I GATNNNNATC 2 cut(s) 889, 1155
BseDI CCNNGG 2 cut(s) 769, 1021
BseGI GGATG 3 cut(s) 278, 796, 938
BseJI GATNNNNATC 2 cut(s) 889, 1155
BseLI CCNNNNNNNGG 2 cut(s) 489, 586
BseMI GCAATG 1 cut(s) 1053
BseMII CTCAG 1 cut(s) 911
BseNI ACTGG 2 cut(s) 327, 483
BseRI GAGGAG 4 cut(s) 197, 200, 575, 602
BseSI GKGCMC 2 cut(s) 461, 818
BseXI GCAGC 3 cut(s) 1080, 1213, 1216
Bsh1285I CGRYCG 1 cut(s) 247
BshFI GGCC 3 cut(s) 859, 1020, 1225
BsiEI CGRYCG 1 cut(s) 247
BsiHKAI GWGCWC 2 cut(s) 1001, 1033
BsiSI CCGG 4 cut(s) 26, 983, 1021, 1045
BslI CCNNNNNNNGG 2 cut(s) 489, 586
BsmAI GTCTC 2 cut(s) 658, 835
BsmBI CGTCTC 1 cut(s) 658
BsmI GAATGC 2 cut(s) 401, 425
BsnI GGCC 3 cut(s) 859, 1020, 1225
Bsp1286I GDGCHC 4 cut(s) 461, 818, 1001, 1033
Bsp1407I TGTACA 1 cut(s) 316
Bsp143I GATC 4 cut(s) 244, 505, 707, 890
BspACI CCGC 5 cut(s) 73, 79, 469, 1062, 1208
BspANI GGCC 3 cut(s) 859, 1020, 1225
BspCNI CTCAG 1 cut(s) 910
BspLI GGNNCC 2 cut(s) 1019, 1124
BspPI GGATC 2 cut(s) 500, 702
BsrDI GCAATG 1 cut(s) 1053
BsrGI TGTACA 1 cut(s) 316
BsrI ACTGG 2 cut(s) 327, 483
BssECI CCNNGG 2 cut(s) 769, 1021
BssMI GATC 4 cut(s) 244, 505, 707, 890
BssNI GRCGYC 1 cut(s) 213
BssT1I CCWWGG 1 cut(s) 769
Bst4CI ACNGT 3 cut(s) 388, 479, 492
Bst6I CTCTTC 2 cut(s) 579, 831
BstACI GRCGYC 1 cut(s) 213
BstAPI GCANNNNNTGC 2 cut(s) 420, 623
BstAUI TGTACA 1 cut(s) 316
BstC8I GCNNGC 4 cut(s) 6, 466, 1011, 1060
BstDEI CTNAG 2 cut(s) 869, 897
BstF5I GGATG 3 cut(s) 278, 796, 938
BstHHI GCGC 1 cut(s) 717
BstKTI GATC 4 cut(s) 247, 508, 710, 893
BstMAI GTCTC 2 cut(s) 658, 835
BstMBI GATC 4 cut(s) 244, 505, 707, 890
BstMCI CGRYCG 1 cut(s) 247
BstNSI RCATGY 1 cut(s) 468
BstSCI CCNGG 3 cut(s) 982, 1020, 1043
BstSFI CTRYAG 1 cut(s) 1219
BstSLI GKGCMC 2 cut(s) 461, 818
BstV1I GCAGC 3 cut(s) 1080, 1213, 1216
BstV2I GAAGAC 3 cut(s) 383, 786, 880
BstX2I RGATCY 1 cut(s) 707
BstYI RGATCY 1 cut(s) 707
BsuRI GGCC 3 cut(s) 859, 1020, 1225
BtsCI GGATG 3 cut(s) 278, 796, 938
BtsI GCAGTG 1 cut(s) 346
BtsIMutI CAGTG 4 cut(s) 346, 475, 759, 936
Cac8I GCNNGC 4 cut(s) 6, 466, 1011, 1060
CfoI GCGC 1 cut(s) 717
Cfr13I GGNCC 1 cut(s) 1018
CseI GACGC 1 cut(s) 675
Csp6I GTAC 3 cut(s) 311, 317, 344
CviAII CATG 5 cut(s) 465, 581, 811, 1049, 1162
CviQI GTAC 3 cut(s) 311, 317, 344
DdeI CTNAG 2 cut(s) 869, 897
DpnI GATC 4 cut(s) 246, 507, 709, 892
DpnII GATC 4 cut(s) 244, 505, 707, 890
DraIII CACNNNGTG 1 cut(s) 479
Eam1104I CTCTTC 2 cut(s) 579, 831
EarI CTCTTC 2 cut(s) 579, 831
Ecl136II GAGCTC 1 cut(s) 999
Eco130I CCWWGG 1 cut(s) 769
Eco24I GRGCYC 1 cut(s) 1001
Eco53kI GAGCTC 1 cut(s) 999
Eco57I CTGAAG 2 cut(s) 813, 855
EcoICRI GAGCTC 1 cut(s) 999
EcoT14I CCWWGG 1 cut(s) 769
EcoT22I ATGCAT 2 cut(s) 425, 697
EcoT38I GRGCYC 1 cut(s) 1001
ErhI CCWWGG 1 cut(s) 769
Esp3I CGTCTC 1 cut(s) 658
FaeI CATG 5 cut(s) 468, 584, 814, 1052, 1165
FatI CATG 5 cut(s) 464, 580, 810, 1048, 1161
FblI GTMKAC 1 cut(s) 487
Fnu4HI GCNGC 5 cut(s) 469, 1069, 1202, 1205, 1208
FokI GGATG 3 cut(s) 265, 803, 945
FriOI GRGCYC 1 cut(s) 1001
Fsp4HI GCNGC 5 cut(s) 469, 1069, 1202, 1205, 1208
FspBI CTAG 1 cut(s) 804
FspI TGCGCA 1 cut(s) 716
GlaI GCGC 1 cut(s) 716
GluI GCNGC 5 cut(s) 469, 1069, 1202, 1205, 1208
HaeIII GGCC 3 cut(s) 859, 1020, 1225
HapII CCGG 4 cut(s) 26, 983, 1021, 1045
HgaI GACGC 1 cut(s) 675
HhaI GCGC 1 cut(s) 717
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 5 cut(s) 468, 584, 814, 1052, 1165
Hin6I GCGC 1 cut(s) 715
HinP1I GCGC 1 cut(s) 715
HincII GTYRAC 2 cut(s) 259, 488
HindII GTYRAC 2 cut(s) 259, 488
HindIII AAGCTT 1 cut(s) 651
HinfI GANTC 3 cut(s) 147, 595, 1036
HpaII CCGG 4 cut(s) 26, 983, 1021, 1045
HphI GGTGA 3 cut(s) 28, 59, 972
Hpy166II GTNNAC 3 cut(s) 259, 346, 488
Hpy188I TCNGA 6 cut(s) 649, 726, 737, 1003, 1035, 1122
Hpy188III TCNNGA 6 cut(s) 93, 248, 542, 661, 1083, 1269
Hpy8I GTNNAC 3 cut(s) 259, 346, 488
Hpy99I CGWCG 6 cut(s) 44, 53, 212, 215, 218, 492
HpyAV CCTTC 4 cut(s) 732, 837, 912, 1127
HpyCH4III ACNGT 3 cut(s) 388, 479, 492
HpyCH4IV ACGT 2 cut(s) 213, 342
HpyF3I CTNAG 2 cut(s) 869, 897
HpySE526I ACGT 2 cut(s) 213, 342
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 5 cut(s) 468, 584, 814, 1052, 1165
HspAI GCGC 1 cut(s) 715
Kzo9I GATC 4 cut(s) 244, 505, 707, 890
LmnI GCTCC 2 cut(s) 562, 996
Lsp1109I GCAGC 3 cut(s) 1080, 1213, 1216
LweI GCATC 6 cut(s) 432, 508, 626, 682, 923, 1175
MaeI CTAG 1 cut(s) 804
MaeII ACGT 2 cut(s) 213, 342
MaeIII GTNAC 3 cut(s) 806, 913, 1037
MalI GATC 4 cut(s) 246, 507, 709, 892
MboI GATC 4 cut(s) 244, 505, 707, 890
MfeI CAATTG 1 cut(s) 621
MflI RGATCY 1 cut(s) 707
MhlI GDGCHC 4 cut(s) 461, 818, 1001, 1033
MluCI AATT 7 cut(s) 305, 511, 525, 569, 621, 919, 975
MlyI GAGTC 3 cut(s) 156, 589, 1045
MmeI TCCRAC 1 cut(s) 661
Mph1103I ATGCAT 2 cut(s) 425, 697
MseI TTAA 2 cut(s) 372, 656
MslI CAYNNNNRTG 1 cut(s) 1248
MspA1I CMGCKG 1 cut(s) 833
MspI CCGG 4 cut(s) 26, 983, 1021, 1045
MspR9I CCNGG 3 cut(s) 984, 1022, 1045
MunI CAATTG 1 cut(s) 621
Mva1269I GAATGC 2 cut(s) 401, 425
NciI CCSGG 3 cut(s) 984, 1022, 1045
NdeII GATC 4 cut(s) 244, 505, 707, 890
NlaIII CATG 5 cut(s) 468, 584, 814, 1052, 1165
NlaIV GGNNCC 2 cut(s) 1019, 1124
NmeAIII GCCGAG 2 cut(s) 986, 1251
NmuCI GTSAC 2 cut(s) 913, 1037
NsbI TGCGCA 1 cut(s) 716
NsiI ATGCAT 2 cut(s) 425, 697
NspI RCATGY 1 cut(s) 468
OliI CACNNNNGTG 1 cut(s) 1248
PaeI GCATGC 1 cut(s) 468
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 213
PctI GAATGC 2 cut(s) 401, 425
PflFI GACNNNGTC 1 cut(s) 212
PkrI GCNGC 5 cut(s) 470, 1070, 1203, 1206, 1209
Ple19I CGATCG 1 cut(s) 247
PleI GAGTC 3 cut(s) 155, 589, 1044
PpsI GAGTC 3 cut(s) 155, 589, 1044
Psp124BI GAGCTC 1 cut(s) 1001
PspN4I GGNNCC 2 cut(s) 1019, 1124
PspPI GGNCC 1 cut(s) 1018
PsuI RGATCY 1 cut(s) 707
PsyI GACNNNGTC 1 cut(s) 212
PvuI CGATCG 1 cut(s) 247
PvuII CAGCTG 1 cut(s) 833
RsaI GTAC 3 cut(s) 312, 318, 345
RsaNI GTAC 3 cut(s) 311, 317, 344
RseI CAYNNNNRTG 1 cut(s) 1248
SacI GAGCTC 1 cut(s) 1001
SalI GTCGAC 1 cut(s) 486
SaqAI TTAA 2 cut(s) 372, 656
SatI GCNGC 5 cut(s) 469, 1069, 1202, 1205, 1208
Sau3AI GATC 4 cut(s) 244, 505, 707, 890
Sau96I GGNCC 1 cut(s) 1018
SchI GAGTC 3 cut(s) 156, 589, 1045
ScrFI CCNGG 3 cut(s) 984, 1022, 1045
SduI GDGCHC 4 cut(s) 461, 818, 1001, 1033
SfaNI GCATC 6 cut(s) 432, 508, 626, 682, 923, 1175
SfcI CTRYAG 1 cut(s) 1219
SmiMI CAYNNNNRTG 1 cut(s) 1248
SmlI CTYRAG 2 cut(s) 753, 1127
SmoI CTYRAG 2 cut(s) 753, 1127
SpeI ACTAGT 1 cut(s) 803
SphI GCATGC 1 cut(s) 468
Sse9I AATT 7 cut(s) 305, 511, 525, 569, 621, 919, 975
SsiI CCGC 5 cut(s) 73, 79, 469, 1062, 1208
SspI AATATT 1 cut(s) 633
SspMI CTAG 1 cut(s) 804
SstI GAGCTC 1 cut(s) 1001
StyD4I CCNGG 3 cut(s) 982, 1020, 1043
StyI CCWWGG 1 cut(s) 769
TaaI ACNGT 3 cut(s) 388, 479, 492
TaiI ACGT 2 cut(s) 216, 345
TaqI TCGA 9 cut(s) 94, 216, 247, 426, 487, 598, 889, 1084, 1110
TasI AATT 7 cut(s) 305, 511, 525, 569, 621, 919, 975
TatI WGTACW 2 cut(s) 310, 316
TauI GCSGC 2 cut(s) 471, 1210
Tru1I TTAA 2 cut(s) 372, 656
Tru9I TTAA 2 cut(s) 372, 656
TscAI CASTG 4 cut(s) 353, 482, 766, 943
TseFI GTSAC 2 cut(s) 913, 1037
TseI GCWGC 3 cut(s) 1068, 1201, 1204
Tsp45I GTSAC 2 cut(s) 913, 1037
TspDTI ATGAA 7 cut(s) 120, 210, 267, 597, 807, 894, 1145
TspGWI ACGGA 4 cut(s) 285, 397, 863, 892
TspRI CASTG 4 cut(s) 353, 482, 766, 943
Tth111I GACNNNGTC 1 cut(s) 212
XapI RAATTY 2 cut(s) 305, 975
XceI RCATGY 1 cut(s) 468
XmiI GTMKAC 1 cut(s) 487
XspI CTAG 1 cut(s) 804
ZraI GACGTC 1 cut(s) 214
Zsp2I ATGCAT 2 cut(s) 425, 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.