AT5G44800

chromatin remodeling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005784
Physical Location & Seq
Reverse (-)
18083277 .. 18093907
10631 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G44800.1

Sequence Viewer

Length: 6672 bp
ATGAAAGATTCAGGCAGTGAAATGATTAAAAGAGATTGGGTCATGAAGCAGAAACGAAGAAAACTTCCGTCTATACTAGATATATTAGACCAAAAAGTGGATAGTTCTATGGCTTTTGATTCCCCGGAATACACTTCTTCCTCTAAACCAAGTAAGCAGCGGCTTAAGACTGATTCGACTCCTGAAAGGAACTCCTCTAAGAGGAAAGGAAATGATGGGAATTATTTTGAATGTGTGATCTGTGACCTTGGTGGTGATTTATTGTGTTGTGATAGTTGTCCTCGGACCTATCATACCGCATGCCTCAATCCACCTCTTAAGCGGATTCCAAATGGTAAGTGGATCTGCCCAAAATGTTCCCCAAACAGTGAAGCACTCAAGCCTGTCAATCGTTTAGATGCCATTGCTAAGCGAGCAAGAACAAAAACCAAGAAAAGAAATTCAAAAGCCGGACCAAAGTGCGAAAGAGCTTCTCAGATTTATTGCAGTTCTATAATTTCTGGAGAACAATCTTCAGAGAAAGGGAAATCTATATCGGCCGAAGAGAGCAAATCCACAGGAAAGGAAGTTTATTCTTCCCCGATGGATGGCTGTTCAACTGCTGAGCTTGGTCATGCATCTGCGGATGACCGACCTGATTCATCGTCTCATGGAGAAGATGATTTGGGGAAACCCGTCATACCCACTGCAGATTTACCATCTGATGCAGGATTAACGTTGCTGTCCTGTGAAGATCTCTCCGAATCTAAACTATCAGATACGGAGAAAACTCATGAAGCACCCGTGGAGAAGTTGGAACATGCTTCCAGTGAGATCGTGGAGAACAAGACAGTTGCTGAAATGGAGACTGGAAAAGGTAAAAGGAAAAAACGGAAGCGTGAACTAAATGATGGGGAAAGTCTTGAAAGGTGCAAGACTGATAAGAAACGCGCGAAGAAAAGTTTGTCCAAAGTGGGTTCCAGTTCTCAGACTACCAAATCACCGGAGTCTTCGAAAAAAAAGAAAAAGAAAAATCGTGTGACTTTAAAATCCTTGTCCAAACCTCAGTCCAAGACAGAAACACCAGAAAAAGTGAAGAAGCTTCCCAAGGAGGAACGTCGTGCAGTACGTGCCACTAATAAATCTTCTAGTTGTTTGGAAGATACAAACTCTCTTCCGGTTGGAAACCTCCAGGTTCATCGTGTTTTAGGATGCCGAATCCAAGGTCTGACTAAAACCTCGCTGTGTAGTGCTCTTTCAGATGACTTGTGTTCGGATAATTTACAAGCTACTGACCAACGGGATAGCTTAGTACAAGATACGAATGCTGAATTAGTAGTTGCTGAGGACAGAATAGATTCTTCTTCTGAGACAGGTAAAAGTTCGAGGGATTCACGACTGAGGGATAAAGATATGGATGATTCTGCTTTAGGTACCGAGGGTATGGTTGAGGTGAAAGAAGAGATGCTTTCTGAAGACATTTCCAATGCCACATTGAGTAGACATGTGGATGATGAAGATATGAAAGTTAGTGAAACGCATGTATCTGTTGAGAGGGAGTTACTTGAAGAAGCACATCAGGAAACAGGGGAAAAAAGCACTGTGGCTGATGAAGAAATTGAGGAGCCTGTTGCTGCTAAAACTTCAGATCTTATTGGTGAGACTGTATCATATGAGTTTCTTGTTAAATGGGTGGATAAATCTAATATTCATAATACTTGGATTTCTGAGGCGGAGCTGAAAGGTCTAGCTAAAAGAAAACTAGAGAACTACAAAGCAAAGTACGGAACAGCTGTAATAAACATCTGTGAAGATAAATGGAAACAGCCTCAGCGAATAGTTGCTCTCCGGGTTTCAAAAGAAGGTAACCAAGAAGCTTACGTAAAGTGGACAGGCTTAGCTTATGATGAATGCACGTGGGAGAGCTTGGAGGAGCCTATTCTTAAACATTCATCCCATTTAATAGATCTTTTTCATCAGTATGAGCAGAAAACATTGGAAAGGAATAGTAAGGGTAATCCCACAAGGGAAAGGGGTGAAGTCGTTACCCTCACAGAACAACCTCAAGAGCTCAGAGGAGGTGCCTTGTTTGCCCATCAGCTTGAGGCTTTGAATTGGCTGCGTAGATGCTGGCATAAATCAAAAAATGTAATACTTGCTGATGAGATGGGGCTTGGAAAAACTGTGTCTGCTAGTGCATTCCTCTCCTCCCTTTATTTTGAATTTGGAGTTGCAAGACCTTGTTTAGTCCTGGTTCCACTTTCAACAATGCCAAACTGGCTATCAGAGTTTTCTCTTTGGGCTCCACTCCTTAATGTTGTGGAGTATCATGGAAGTGCAAAGGGACGAGCCATAATTCGAGACTATGAGTGGCATGCTAAGAATTCTACTGGGACGACCAAGAAGCCGACATCCTACAAATTTAATGTCCTTTTAACTACTTATGAAATGGTTCTGGCTGACTCATCTCATCTACGTGGGGTTCCATGGGAAGTTCTTGTGGTTGATGAAGGGCATCGTCTAAAGAATTCAGAAAGTAAGCTGTTTAGCTTGCTCAACACATTCTCTTTTCAACACCGTGTGCTCTTGACTGGCACCCCTCTTCAGAATAACATTGGTGAGATGTATAATCTGCTCAACTTCTTGCAACCATCTTCATTCCCTTCTTTGTCTTCTTTTGAGGAGAGGTTCCATGATTTGACAAGTGCTGAGAAAGTAGAAGAACTGAAGAAACTTGTTGCTCCTCATATGCTTCGCCGGCTTAAAAAAGATGCGATGCAGAATATTCCTCCAAAGACAGAGAGGATGGTCCCTGTCGAGTTGACATCGATCCAGGCGGAATATTATCGTGCAATGCTAACTAAGAACTATCAGATACTACGAAATATCGGAAAAGGGGTAGCGCAACAATCAATGCTTAACATAGTGATGCAGTTGAGAAAGGTTTGCAATCACCCATATCTCATACCAGGTACTGAGCCAGAGTCTGGGTCATTGGAGTTTCTTCACGATATGAGAATAAAAGCGTCAGCCAAGTTGACTCTGTTGCACTCTATGCTTAAGGTGCTACATAAGGAAGGCCATAGAGTTCTGATATTTTCACAGATGACAAAGCTTCTAGACATTCTGGAGGACTACCTGAACATAGAATTTGGGCCTAAAACATTTGAAAGGGTAGATGGTTCTGTTGCTGTAGCTGATCGTCAGGCAGCTATAGCACGTTTCAACCAAGACAAAAATCGGTTCGTTTTTCTGTTATCAACTCGTGCCTGTGGTCTTGGTATCAATCTGGCAACAGCTGATACTGTTATTATCTATGACTCTGATTTCAACCCTCACGCTGATATCCAAGCCATGAATAGAGCTCATCGAATTGGACAGTCCAAACGACTTTTGGTATACAGACTTGTTGTCCGTGCCAGCGTTGAAGAGCGCATTTTGCAGCTGGCCAAGAAGAAGTTGATGCTCGATCAGCTTTTTGTAAACAAGTCGGGATCCCAGAAGGAATTTGAAGATATTCTACGCTGGGGTACTGAAGAACTTTTCAACGACTCCGCTGGTGAGAACAAGAAAGATACAGCTGAAAGTAATGGAAACTTAGATGTAATCATGGATTTAGAAAGCAAGAGTAGGAAAAAAGGTGGTGGCCTCGGAGATGTTTATCAAGACAAATGTACAGAAGGAAATGGGAAGATTGTTTGGGATGATATTGCAATTATGAAGTTGCTTGATCGGTCAAATCTTCAATCTGCCTCCACTGATGCCGCTGATACTGAGTTGGATAATGATATGCTCGGCTCCGTGAAGCCTGTGGAATGGAATGAGGAAACAGCTGAAGAACAAGTTGGAGCTGAATCACCTGCACTGGTGACTGATGATACTGGTGAACCGAGTTCAGAGAGGAAAGATGATGATGTCGTTAATTTTACTGAAGAAAATGAATGGGACAGGCTTCTGCGTATGAGATGGGAGAAATATCAGAGCGAGGAAGAAGCAGCGCTTGGCAGAGGGAAGCGTTTGAGAAAGGCTGTTTCGTATAGGGAAGCATATGCCCCACATACCAGTGGACCTGTAAATGAGAGTGGTGGTGAAGATGAGAAAGAACCAGAACCAGAACTTAAGAAGGAATATACACCGGCAGGGCGAGCCCTAAAAGAAAAGTTTACCAAACTGCGAGAGAGGCAAAAGAACCTGATTGCGAGAAGGAATTCTGTTGAAGAGTCTCTTCCTAGCGGCAATGTGGATCAGGTAACTGAAGTAGCTAATCAGGACGAAGAAAGCCCTACATCAATGGACTTGGACGATAGCAAAGCTAGCCAGCAATGTGATGCACAGAAAAGAAAAGCCAGTTCTTCAGATCCTAAACCAGATCTTCTAAGCCAACATCATCATGGCGCAGAATGTCTGCCATCTTTACCCCCAAACAACCTGCCAGTCCTTGGACTGTGTGCTCCTAATTTTACTCAGTCAGAATCCTCCCGGAGAAATTATTCTCGTCCAGGTAGTAGACAGAACAGACCCATAACAGGACCCCATTTTCCCTTCAATCTACCCCAAACATCGAACTTGGTTGAGAGGGAAGCAAATGACCAGGAACCTCCTATGGGTAAACTAAAACCACAGAACATAAAGGAAGAACCTTTTCAGCAGCCTCTTAGTAATATGGATGGTTGGCTTCCACATCGTCAGTTTCCTCCGTCAGGGGATTTTGAGCGTCCTCGAAGTTCTGGTGCTGCTTTTGCTGATTTCCAGGAGAAGTTTCCGTTGCTTAACCTTCCATTTGATGATAAGCTGCTTCCTCGATTTCCATTTCAGCCGAGAACAATGGGAACTTCGCATCAAGACATAATGGCCAATCTTTCGATGAGGAAAAGATTTGAAGGTACTGGTCATTCTATGCAAGACCTATTTGGCGGAACACCAATGCCGTTTCTACCCAATATGAAAATCCCTCCTATGGATCCACCTGTCTTCAACCAACAAGAGAAGGACTTACCGCCTTTGGGTTTGGATCAGTTTCCATCAGCTCTTTCATCTATCCCAGAGAACCATCGAAAGGTGCTGGAGAATATAATGCTAAGAACTGGCTCTGGAATTGGGCACGTACAGAAAAAGAAAACAAGAGTAGATGCATGGTCCGAGGATGAACTAGATTCTCTCTGGATTGGGATTCGCAGACATGGGTATGGAAACTGGGAGACAATTCTCAGAGATCCAAGGCTCAAATTTTCGAAATTTAAAACACCAGAGTACTTGGCAGCTAGGTGGGAAGAAGAGCAACGTAAATTCTTGGATAGTCTTTCATCTCTGCCATCTAAATCAAGCAGGACTGATAAGTCCACCAAATCTTCCTTGTTTCCTGGTCTTCCCCAAGGAATAATGAATCGGGCCTTACATGGTAAATATGCCACTCCTCCAAGGTTCCAATCCCATCTCACAGACATAAAACTCGGATTCGGCGATCTAGCATCTCCCCTTCCGTTATTTGAACCATCTGATCACCTGGGATTTCGAAGTGAGCATTTTCCTCCCATGGCAAATCTGTGCACTGACAATCTTCCCGGGGAGCCTTCTGCTGGACCATCTGAACGAGCAGGGACATCGACAAATATTCCCAACGAGAAGCCTTTTCCACTCAACTCTCTTGGAATGGGCAACTTAGGTTCATTGGGTTTGGATAGTTTAAGTTCCTTAAACACACTGAGAGCAGAGGAAAAACGGGATGCTATTAAGCGCGGGAAACTACCCTTGTTTTTAGATATGCCGTTACCTCAGATGCTTGATTCAAGCAACAACGTATTCTTGGGAAGATCAGCCAATCCATCTTTCCTTCACCCAAATCGAGGGTTGAATCCCTCCAATCCCATGGGGAGAGACATAATGGGAATTAGCTCTTCAGAGAACAAGCTACCTCATTGGTTACGGAATGTTGTGACTGTTCCTACCGTGAAGTCACCTGAACCACCCACTCTACCTCCAACTGTGTCAGCTATAGCTCAATCAGTCCGCGTTTTATATGGTGAAGACTCTACAACCATTCCACCGTTTGTGATACCAGAGCCGCCACCTCCTGCTCCCAGAGATCCAAGACACAGTCTGCGTAAGAAAAGGAAACGTAAATTGCATTCATCGAGTCAAAAGACTACAGACATTGGTAGTAGCAGCCACAATGCTGTAGAAAGCAGCTCTCAAGGCAATCCACAAACATCTGCAACTCCTCCTTTGCCTCCACCGTCTCTGGCGGGTGAAACTTCAGGGTCTTCTCAACCCAAATTACCTCCTCACAACCTAAATAGCACAGAACCACTGTCCTCTGAAGCAATCATAATTCCACCACCTGAAGAAGATTCTGTGATAGCAGCAGCGCCATCTGAAGCACCAGGGCCTAGTCTAGAGGGAATCACTGGTACAACAAAGTCAATCTCGCTAGAGAGCCAAAGCTCTGAACCAGAAACTATTAATCAAGATGGAGACTTAGATCCAGAAACTGATGAGAAAGTTGAGTCTGAACGAACCCCGCTTCATTCAGATGAGAAACAAGAGGAGCAAGAATCTGAAAATGCATTGAACAAGCAGTGTGAGCCCATAGAGGCTGAAAGTCAAAACACCAATGCAGAAGAAGAAGCAGAGGCACAAGAAGAAGATGAAGAATCCATGAAGATGGTGACTGGTAATTCTCTTAGTGACGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006323 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007289 GO:0007399 GO:0007417 GO:0007420 GO:0008150 GO:0008152 GO:0008213 GO:0008285 GO:0009506 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0016581 GO:0016604 GO:0016607 GO:0017053 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019953 GO:0021895 GO:0021953 GO:0022008 GO:0022412 GO:0022414 GO:0023051 GO:0023056 GO:0030054 GO:0030154 GO:0030182 GO:0030900 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034728 GO:0034968 GO:0035064 GO:0035092 GO:0035093 GO:0036211 GO:0042127 GO:0042393 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043486 GO:0043543 GO:0043933 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0045165 GO:0048232 GO:0048468 GO:0048513 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048609 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051704 GO:0055044 GO:0060255 GO:0060322 GO:0060850 GO:0061628 GO:0065007 GO:0070013 GO:0070603 GO:0070734 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0098532 GO:0140030 GO:0140034 GO:1901564 GO:1901796 GO:1901798 GO:1902494 GO:1902531 GO:1902533 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05165 ko05203 map05165 map05203
Pfam Domains
Protein Families
Chromo DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

2223

Amino Acids

247.92

Weight (kDa)

5.93

Isoelectric Point (pI)

54.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 78 - 119 4.4e-10 PHD-finger
Chromo PF00385 602 - 653 1.2e-13 Chromo (CHRromatin Organisation MOdifier) domain
ResIII PF04851 689 - 860 1.2e-08 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 692 - 981 1.3e-76 SNF2-related domain
HDA2-3 PF11496 929 - 1145 2.7e-12 Class II histone deacetylase complex subunits 2 and 3
Helicase_C PF00271 1005 - 1119 2e-23 Helicase conserved C-terminal domain
DUF1087 PF06465 1304 - 1341 3.2e-06 CHD subfamily II, DUF1087
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 3847
AasI GACNNNNNNGTC 1 cut(s) 5314
Acc36I ACCTGC 2 cut(s) 3847, 4416
Acc65I GGTACC 1 cut(s) 1412
AccB1I GGYRCC 3 cut(s) 1412, 2060, 2573
AccB7I CCANNNNNTGG 3 cut(s) 97, 2966, 4418
AccI GTMKAC 3 cut(s) 1480, 3378, 4486
AccII CGCG 4 cut(s) 930, 932, 5715, 5988
AclI AACGTT 1 cut(s) 716
AcoI YGGCCR 3 cut(s) 537, 3426, 4830
AcvI CACGTG 1 cut(s) 1896
AdeI CACNNNGTG 1 cut(s) 2560
AfeI AGCGCT 1 cut(s) 3978
AflII CTTAAG 4 cut(s) 164, 317, 3038, 4097
AflIII ACRYGT 1 cut(s) 1483
AhdI GACNNNNNGTC 1 cut(s) 3389
AjuI GAANNNNNNNTTGG 6 cut(s) 3807, 3839, 3963, 3995, 5789, 5821
Alw21I GWGCWC 6 cut(s) 1234, 2052, 2565, 3346, 4432, 5528
Alw44I GTGCAC 1 cut(s) 5524
AlwNI CAGNNNCTG 4 cut(s) 836, 2954, 2966, 6467
Ama87I CYCGRG 1 cut(s) 5540
Aor51HI AGCGCT 1 cut(s) 3978
AoxI GGCC 8 cut(s) 537, 3058, 3134, 3426, 3625, 4830, 5367, 6362
ApaLI GTGCAC 1 cut(s) 5524
ArsI GACNNNNNNTTYG 4 cut(s) 1189, 1221, 2391, 2423
AseI ATTAAT 1 cut(s) 6438
Asp700I GAANNNNTTC 6 cut(s) 1336, 2430, 3495, 4186, 4468, 4620
Asp718I GGTACC 1 cut(s) 1412
AspLEI GCGC 7 cut(s) 932, 2884, 3414, 3979, 4376, 5715, 6346
AsuC2I CCSGG 5 cut(s) 125, 1829, 4459, 5541, 5542
AsuII TTCGAA 3 cut(s) 992, 5210, 5491
AsuNHI GCTAGC 1 cut(s) 4292
AvaI CYCGRG 1 cut(s) 5540
AvaII GGWCC 7 cut(s) 285, 452, 2788, 4046, 4508, 5115, 5558
BaeGI GKGCMC 2 cut(s) 5082, 5528
BaeI ACNNNNGTAYC 2 cut(s) 1506, 1539
BalI TGGCCA 2 cut(s) 3428, 4832
BamHI GGATCC 2 cut(s) 3473, 4939
BanI GGYRCC 3 cut(s) 1412, 2060, 2573
BanII GRGCYC 5 cut(s) 2052, 2284, 3346, 4129, 6564
BarI GAAGNNNNNNTAC 2 cut(s) 3483, 3515
BauI CACGAG 1 cut(s) 3243
BbrPI CACGTG 1 cut(s) 1896
BbsI GAAGAC 7 cut(s) 981, 1461, 2643, 4942, 5336, 6009, 6231
Bbv12I GWGCWC 6 cut(s) 1234, 2052, 2565, 3346, 4432, 5528
BbvCI CCTCAGC 2 cut(s) 1323, 1809
BceAI ACGGC 2 cut(s) 4891, 5728
BcgI CGANNNNNNTGC 2 cut(s) 5562, 5596
BclI TGATCA 1 cut(s) 5476
BcnI CCSGG 5 cut(s) 125, 1829, 4459, 5541, 5542
BfmI CTRYAG 6 cut(s) 687, 3171, 3192, 5970, 6123, 6153
BfoI RGCGCY 2 cut(s) 3980, 6347
BfrI CTTAAG 4 cut(s) 164, 317, 3038, 4097
BfuAI ACCTGC 2 cut(s) 3847, 4416
BglI GCCNNNNNGGC 1 cut(s) 2257
BglII AGATCT 4 cut(s) 733, 1627, 1945, 4348
BlpI GCTNAGC 3 cut(s) 408, 603, 1876
BmcAI AGTACT 1 cut(s) 5231
Bme18I GGWCC 7 cut(s) 285, 452, 2788, 4046, 4508, 5115, 5558
BmeRI GACNNNNNGTC 1 cut(s) 3389
BmeT110I CYCGRG 1 cut(s) 5540
BmrI ACTGGG 2 cut(s) 2379, 5182
BmtI GCTAGC 1 cut(s) 4296
BmuI ACTGGG 2 cut(s) 2379, 5182
BpiI GAAGAC 7 cut(s) 981, 1461, 2643, 4942, 5336, 6009, 6231
BpmI CTGGAG 4 cut(s) 522, 1154, 3128, 5063
Bpu10I CCTNAGC 2 cut(s) 1323, 1809
Bpu1102I GCTNAGC 3 cut(s) 408, 603, 1876
Bpu14I TTCGAA 3 cut(s) 992, 5210, 5491
BpuEI CTTGAG 4 cut(s) 362, 2028, 2102, 6153
BpuMI CCSGG 5 cut(s) 125, 1829, 4459, 5541, 5542
Bsa29I ATCGAT 1 cut(s) 2807
BsaAI YACGTR 5 cut(s) 1109, 1861, 1896, 2456, 5083
BsaBI GATNNNNATC 1 cut(s) 3639
BsaWI WCCGGW 2 cut(s) 982, 1156
BsaXI ACNNNNNCTCC 2 cut(s) 5938, 5968
Bse118I RCCGGY 2 cut(s) 2736, 4114
Bse3DI GCAATG 4 cut(s) 402, 2838, 4222, 4307
Bse8I GATNNNNATC 1 cut(s) 3639
BseCI ATCGAT 1 cut(s) 2807
BseJI GATNNNNATC 1 cut(s) 3639
BseMI GCAATG 4 cut(s) 402, 2838, 4222, 4307
BseSI GKGCMC 2 cut(s) 5082, 5528
BseX3I CGGCCG 1 cut(s) 537
BseYI CCCAGC 1 cut(s) 3504
BsgI GTGCAG 2 cut(s) 1122, 3825
Bsh1236I CGCG 4 cut(s) 930, 932, 5715, 5988
Bsh1285I CGRYCG 1 cut(s) 540
BshFI GGCC 8 cut(s) 539, 3060, 3136, 3428, 3627, 4832, 5369, 6364
BshNI GGYRCC 3 cut(s) 1412, 2060, 2573
BshVI ATCGAT 1 cut(s) 2807
BsiEI CGRYCG 1 cut(s) 540
BsiHKAI GWGCWC 6 cut(s) 1234, 2052, 2565, 3346, 4432, 5528
BsiHKCI CYCGRG 1 cut(s) 5540
BsiSI CCGG 9 cut(s) 125, 450, 983, 1157, 1828, 2737, 4115, 4459, 5541
BslFI GGGAC 5 cut(s) 2337, 2386, 2774, 3938, 5590
BsmBI CGTCTC 2 cut(s) 651, 6219
BsmFI GGGAC 5 cut(s) 2337, 2386, 2774, 3938, 5590
BsmI GAATGC 4 cut(s) 1309, 1895, 2177, 6103
BsnI GGCC 8 cut(s) 539, 3060, 3136, 3428, 3627, 4832, 5369, 6364
BsoBI CYCGRG 1 cut(s) 5540
Bsp119I TTCGAA 3 cut(s) 992, 5210, 5491
Bsp1407I TGTACA 1 cut(s) 3653
Bsp1720I GCTNAGC 3 cut(s) 408, 603, 1876
Bsp19I CCATGG 3 cut(s) 2465, 5511, 5844
BspANI GGCC 8 cut(s) 539, 3060, 3136, 3428, 3627, 4832, 5369, 6364
BspDI ATCGAT 1 cut(s) 2807
BspFNI CGCG 4 cut(s) 930, 932, 5715, 5988
BspHI TCATGA 2 cut(s) 42, 772
BspMAI CTGCAG 1 cut(s) 691
BspMI ACCTGC 2 cut(s) 3847, 4416
BspOI GCTAGC 1 cut(s) 4296
BspQI GCTCTTC 3 cut(s) 3402, 5247, 5878
BspT104I TTCGAA 3 cut(s) 992, 5210, 5491
BspT107I GGYRCC 3 cut(s) 1412, 2060, 2573
BspTI CTTAAG 4 cut(s) 164, 317, 3038, 4097
BsrDI GCAATG 4 cut(s) 402, 2838, 4222, 4307
BsrFI RCCGGY 2 cut(s) 2736, 4114
BsrGI TGTACA 1 cut(s) 3653
BssAI RCCGGY 2 cut(s) 2736, 4114
BssNAI GTATAC 1 cut(s) 3379
BssSI CACGAG 1 cut(s) 3243
Bst1107I GTATAC 1 cut(s) 3379
Bst2BI CACGAG 1 cut(s) 3243
Bst6I CTCTTC 9 cut(s) 537, 1158, 1434, 2586, 3402, 4191, 4209, 5247, 5878
BstAFI CTTAAG 4 cut(s) 164, 317, 3038, 4097
BstAPI GCANNNNNTGC 2 cut(s) 1109, 3034
BstAUI TGTACA 1 cut(s) 3653
BstBAI YACGTR 5 cut(s) 1109, 1861, 1896, 2456, 5083
BstBI TTCGAA 3 cut(s) 992, 5210, 5491
BstDSI CCRYGG 4 cut(s) 783, 2465, 5511, 5844
BstEII GGTNACC 1 cut(s) 1844
BstENI CCTNNNNNAGG 2 cut(s) 199, 4677
BstFNI CGCG 4 cut(s) 930, 932, 5715, 5988
BstH2I RGCGCY 2 cut(s) 3980, 6347
BstHHI GCGC 7 cut(s) 932, 2884, 3414, 3979, 4376, 5715, 6346
BstMCI CGRYCG 1 cut(s) 540
BstNSI RCATGY 5 cut(s) 303, 803, 1487, 1523, 2357
BstPI GGTNACC 1 cut(s) 1844
BstSFI CTRYAG 6 cut(s) 687, 3171, 3192, 5970, 6123, 6153
BstSLI GKGCMC 2 cut(s) 5082, 5528
BstSNI TACGTA 1 cut(s) 1861
BstUI CGCG 4 cut(s) 930, 932, 5715, 5988
BstV2I GAAGAC 7 cut(s) 981, 1461, 2643, 4942, 5336, 6009, 6231
BstXI CCANNNNNNTGG 2 cut(s) 5845, 6640
BstZ17I GTATAC 1 cut(s) 3379
BstZI CGGCCG 1 cut(s) 537
Bsu15I ATCGAT 1 cut(s) 2807
BsuRI GGCC 8 cut(s) 539, 3060, 3136, 3428, 3627, 4832, 5369, 6364
BsuTUI ATCGAT 1 cut(s) 2807
BtgI CCRYGG 4 cut(s) 783, 2465, 5511, 5844
BtgZI GCGATG 1 cut(s) 2768
BtsI GCAGTG 3 cut(s) 22, 684, 6560
BveI ACCTGC 2 cut(s) 3847, 4416
CaiI CAGNNNCTG 4 cut(s) 836, 2954, 2966, 6467
CciI TCATGA 2 cut(s) 42, 772
CfoI GCGC 7 cut(s) 932, 2884, 3414, 3979, 4376, 5715, 6346
Cfr10I RCCGGY 2 cut(s) 2736, 4114
Cfr9I CCCGGG 1 cut(s) 5540
ClaI ATCGAT 1 cut(s) 2807
CseI GACGC 2 cut(s) 2994, 4682
CsiI ACCWGGT 1 cut(s) 2947
DraI TTTAAA 2 cut(s) 1026, 5218
DraIII CACNNNGTG 1 cut(s) 2560
DrdI GACNNNNNNGTC 1 cut(s) 5314
DriI GACNNNNNGTC 1 cut(s) 3389
DseDI GACNNNNNNGTC 1 cut(s) 5314
EaeI YGGCCR 3 cut(s) 537, 3426, 4830
EagI CGGCCG 1 cut(s) 537
Eam1104I CTCTTC 9 cut(s) 537, 1158, 1434, 2586, 3402, 4191, 4209, 5247, 5878
Eam1105I GACNNNNNGTC 1 cut(s) 3389
EarI CTCTTC 9 cut(s) 537, 1158, 1434, 2586, 3402, 4191, 4209, 5247, 5878
EciI GGCGGA 3 cut(s) 1727, 2831, 4908
Ecl136II GAGCTC 2 cut(s) 2050, 3344
EclXI CGGCCG 1 cut(s) 537
Eco105I TACGTA 1 cut(s) 1861
Eco24I GRGCYC 5 cut(s) 2052, 2284, 3346, 4129, 6564
Eco32I GATATC 1 cut(s) 3325
Eco47I GGWCC 7 cut(s) 285, 452, 2788, 4046, 4508, 5115, 5558
Eco47III AGCGCT 1 cut(s) 3978
Eco52I CGGCCG 1 cut(s) 537
Eco53kI GAGCTC 2 cut(s) 2050, 3344
Eco72I CACGTG 1 cut(s) 1896
Eco88I CYCGRG 1 cut(s) 5540
Eco91I GGTNACC 1 cut(s) 1844
EcoICRI GAGCTC 2 cut(s) 2050, 3344
EcoNI CCTNNNNNAGG 2 cut(s) 199, 4677
EcoO109I RGGNCCY 2 cut(s) 4508, 6362
EcoO65I GGTNACC 1 cut(s) 1844
EcoRI GAATTC 3 cut(s) 2362, 2506, 4186
EcoRV GATATC 1 cut(s) 3325
EcoT22I ATGCAT 3 cut(s) 619, 5113, 6544
EcoT38I GRGCYC 5 cut(s) 2052, 2284, 3346, 4129, 6564
Esp3I CGTCTC 2 cut(s) 651, 6219
FalI AAGNNNNNCTT 6 cut(s) 1431, 1463, 3963, 3995, 4188, 4220
FaqI GGGAC 5 cut(s) 2337, 2386, 2774, 3938, 5590
FauI CCCGC 3 cut(s) 5708, 6214, 6504
FauNDI CATATG 3 cut(s) 1651, 2727, 4027
FbaI TGATCA 1 cut(s) 5476
FblI GTMKAC 3 cut(s) 1480, 3378, 4486
FriOI GRGCYC 5 cut(s) 2052, 2284, 3346, 4129, 6564
GlaI GCGC 7 cut(s) 931, 2883, 3413, 3978, 4375, 5714, 6345
GsaI CCCAGC 1 cut(s) 3508
GsuI CTGGAG 4 cut(s) 522, 1154, 3128, 5063
HaeII RGCGCY 2 cut(s) 3980, 6347
HaeIII GGCC 8 cut(s) 539, 3060, 3136, 3428, 3627, 4832, 5369, 6364
HapII CCGG 9 cut(s) 125, 450, 983, 1157, 1828, 2737, 4115, 4459, 5541
HgaI GACGC 2 cut(s) 2994, 4682
HhaI GCGC 7 cut(s) 932, 2884, 3414, 3979, 4376, 5715, 6346
Hin6I GCGC 7 cut(s) 930, 2882, 3412, 3977, 4374, 5713, 6344
HinP1I GCGC 7 cut(s) 930, 2882, 3412, 3977, 4374, 5713, 6344
HincII GTYRAC 2 cut(s) 2802, 3018
HindII GTYRAC 2 cut(s) 2802, 3018
HindIII AAGCTT 3 cut(s) 1079, 1854, 3092
HpaII CCGG 9 cut(s) 125, 450, 983, 1157, 1828, 2737, 4115, 4459, 5541
Hpy99I CGWCG 1 cut(s) 1101
HspAI GCGC 7 cut(s) 930, 2882, 3412, 3977, 4374, 5713, 6344
KpnI GGTACC 1 cut(s) 1416
KroI GCCGGC 1 cut(s) 2736
KroNI GCCGGC 1 cut(s) 2738
Ksp22I TGATCA 1 cut(s) 5476
LguI GCTCTTC 3 cut(s) 3402, 5247, 5878
MabI ACCWGGT 1 cut(s) 2947
MlsI TGGCCA 2 cut(s) 3428, 4832
MluNI TGGCCA 2 cut(s) 3428, 4832
MmeI TCCRAC 5 cut(s) 774, 1141, 3738, 3805, 5981
Mox20I TGGCCA 2 cut(s) 3428, 4832
Mph1103I ATGCAT 3 cut(s) 619, 5113, 6544
MroNI GCCGGC 1 cut(s) 2736
MroXI GAANNNNTTC 6 cut(s) 1336, 2430, 3495, 4186, 4468, 4620
MscI TGGCCA 2 cut(s) 3428, 4832
Msp20I TGGCCA 2 cut(s) 3428, 4832
MspA1I CMGCKG 8 cut(s) 160, 1772, 3278, 3424, 3536, 3560, 3746, 3812
MspCI CTTAAG 4 cut(s) 164, 317, 3038, 4097
MspI CCGG 9 cut(s) 125, 450, 983, 1157, 1828, 2737, 4115, 4459, 5541
Mva1269I GAATGC 4 cut(s) 1309, 1895, 2177, 6103
MvnI CGCG 4 cut(s) 930, 932, 5715, 5988
NaeI GCCGGC 1 cut(s) 2738
NciI CCSGG 5 cut(s) 125, 1829, 4459, 5541, 5542
NcoI CCATGG 3 cut(s) 2465, 5511, 5844
NdeI CATATG 3 cut(s) 1651, 2727, 4027
NgoMIV GCCGGC 1 cut(s) 2736
NheI GCTAGC 1 cut(s) 4292
NmeAIII GCCGAG 2 cut(s) 3753, 4821
NmuCI GTSAC 7 cut(s) 242, 1018, 3847, 5911, 5931, 6643, 6662
NsiI ATGCAT 3 cut(s) 619, 5113, 6544
NspI RCATGY 5 cut(s) 303, 803, 1487, 1523, 2357
NspV TTCGAA 3 cut(s) 992, 5210, 5491
PaeI GCATGC 2 cut(s) 303, 2357
PagI TCATGA 2 cut(s) 42, 772
PaqCI CACCTGC 1 cut(s) 3847
PciI ACATGT 1 cut(s) 1483
PciSI GCTCTTC 3 cut(s) 3402, 5247, 5878
PcsI WCGNNNNNNNCGW 2 cut(s) 1105, 5436
PctI GAATGC 4 cut(s) 1309, 1895, 2177, 6103
PdiI GCCGGC 1 cut(s) 2738
PdmI GAANNNNTTC 6 cut(s) 1336, 2430, 3495, 4186, 4468, 4620
PflFI GACNNNGTC 1 cut(s) 6072
PflMI CCANNNNNTGG 3 cut(s) 97, 2966, 4418
PfoI TCCNGGA 2 cut(s) 4457, 4728
PmaCI CACGTG 1 cut(s) 1896
PmlI CACGTG 1 cut(s) 1896
Ppu21I YACGTR 5 cut(s) 1109, 1861, 1896, 2456, 5083
PpuMI RGGWCCY 1 cut(s) 4508
PscI ACATGT 1 cut(s) 1483
PshBI ATTAAT 1 cut(s) 6438
Psp124BI GAGCTC 2 cut(s) 2052, 3346
Psp1406I AACGTT 1 cut(s) 716
Psp5II RGGWCCY 1 cut(s) 4508
PspCI CACGTG 1 cut(s) 1896
PspEI GGTNACC 1 cut(s) 1844
PspFI CCCAGC 1 cut(s) 3504
PspPPI RGGWCCY 1 cut(s) 4508
PstI CTGCAG 1 cut(s) 691
PstNI CAGNNNCTG 4 cut(s) 836, 2954, 2966, 6467
PsyI GACNNNGTC 1 cut(s) 6072
PvuII CAGCTG 5 cut(s) 1772, 3278, 3424, 3560, 3812
SacI GAGCTC 2 cut(s) 2052, 3346
SapI GCTCTTC 3 cut(s) 3402, 5247, 5878
ScaI AGTACT 1 cut(s) 5231
SexAI ACCWGGT 1 cut(s) 2947
SfcI CTRYAG 6 cut(s) 687, 3171, 3192, 5970, 6123, 6153
SfuI TTCGAA 3 cut(s) 992, 5210, 5491
SinI GGWCC 7 cut(s) 285, 452, 2788, 4046, 4508, 5115, 5558
SmaI CCCGGG 1 cut(s) 5542
SmlI CTYRAG 8 cut(s) 164, 317, 377, 2043, 2081, 3038, 4097, 6168
SmoI CTYRAG 8 cut(s) 164, 317, 377, 2043, 2081, 3038, 4097, 6168
SnaBI TACGTA 1 cut(s) 1861
SphI GCATGC 2 cut(s) 303, 2357
SspI AATATT 4 cut(s) 1687, 2764, 2822, 5590
SstI GAGCTC 2 cut(s) 2052, 3346
TaqII GACCGA 2 cut(s) 645, 3702
TatI WGTACW 3 cut(s) 1291, 3653, 5229
TauI GCSGC 4 cut(s) 163, 3746, 4215, 6043
TseFI GTSAC 7 cut(s) 242, 1018, 3847, 5911, 5931, 6643, 6662
Tsp45I GTSAC 7 cut(s) 242, 1018, 3847, 5911, 5931, 6643, 6662
TspMI CCCGGG 1 cut(s) 5540
Tth111I GACNNNGTC 1 cut(s) 6072
Van91I CCANNNNNTGG 3 cut(s) 97, 2966, 4418
Vha464I CTTAAG 4 cut(s) 164, 317, 3038, 4097
VneI GTGCAC 1 cut(s) 5524
VpaK11BI GGWCC 7 cut(s) 285, 452, 2788, 4046, 4508, 5115, 5558
VspI ATTAAT 1 cut(s) 6438
XagI CCTNNNNNAGG 2 cut(s) 199, 4677
XbaI TCTAGA 2 cut(s) 3097, 6370
XceI RCATGY 5 cut(s) 303, 803, 1487, 1523, 2357
XcmI CCANNNNNNNNNTGG 4 cut(s) 336, 814, 3370, 4367
XmaI CCCGGG 1 cut(s) 5540
XmiI GTMKAC 3 cut(s) 1480, 3378, 4486
XmnI GAANNNNTTC 6 cut(s) 1336, 2430, 3495, 4186, 4468, 4620
ZrmI AGTACT 1 cut(s) 5231
Zsp2I ATGCAT 3 cut(s) 619, 5113, 6544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.