RchiOBHm_Chr5g0020581

DUF1087

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0005784
Physical Location & Seq
Forward (+)
14820194 .. 14833572
13379 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30065

Sequence Viewer

Length: 7179 bp
ATGAAGGATAACAGCTCGTCAACAAGTACAATGATTAACAGAAACTGGGTCTTGAAACGAAAACGTAGAAAGCTTCCTTATGGACCTGCTCTATCTAATGGCAAAGAAGACAGTTCAGCAGCATCAGAATCTCAAGGGAAGACATCTTCTTCCGCTAAACGACGGCTGACTAATGAAATTATTTCTGATCGACTTTCGTCCAAGAAGAAAGGAAACGATGGGTATTACTATGAATGTGTGGTCTGTGACCTCGGTGGTAACTTGTTGTGTTGTGATAGTTGTCCCCAAACCTATCATCTCCAGTGTCTTAATCCACCTCTTAAGCGGATTCCGAATGGGAAGTGGCAGTGCCCAAACTGCTGTCAGAAAAGTGATGTGCCAGAGCCTTTAAATTATCTAGCTGATAACATTTCAAAACGAGCAAGGACAAAGATTTCCACCTCTAAGTCCAAAGCTGAAGTTAAGTCATCTGAAAGAGAGAAAGTTTCGCAGATTTTTGGGAACACCATTGTTGCAAAGAAAAGATCATCAAGCAAAGGGAAAGCTCATGGAGTTAAATCCTTTGAAAAGAAACCATTCTCCCAGATAGATATATCTTCTAGCACGAAGCCCAGTCATTCATCAGCTGGCTGTTCTGTGGAGGGTATTTCATTGTCTGAGAATGTTGGCGATGAAAATAGATCTAATCTTTCCCCACCAGATGATTCCGCAGACAAAAAGTTGAGCTCTCCGGCTAAAGAGGTTTCATCTCATTCTAAAATATCAGAGACAAATGAAGAAGCTCCGGAGGCAGCTGTGACAACTGGAGAAGCTCCGGAAGCAGCTGTGACAACTGGAGAAGCTCCGGAGGCAGCTGTGACAACTGGAGAAGCTCCGGAGGCATCTGTGCCAAATGGAGAAGCTCCTGAGGCATCCGTGACAAATGGAGAAGCTACTGAGGCATCTGTCCTTCCTGAAGTGAAGCCTGACCCGTCTTGTGATGATGCATCTCCGCGTAAGACCATTGTTCTTGCCATCAGTGCTGCTGCTGGCAAAGCTAGAAAAAGAAAACACAAAGGCAATAATGAGAAGAGTAAAAAGAAGCGCAGGACAGAGAAGAGGAAAACTGTCATTGGTGTTTCTAAACAGTCTGGATCTAAAGCAAATACCTCAAGCCCAGGGACTCGTATTCGTAAAACACTTCGTAAGCATAAATCTCTCAACCATGGGGTTTCTGCATCTTTGGCAAGGGAGGATGTCACAACCAAGGGTTCAGATGTCCAGATGAAAGACAAGGACCTTACTGAGGAAGCAAAAGACCAATTTCATAATGCAGATAAAGCCGGAAATCATGGAGTTGAAACATTAATGCAGAAGGATAGTCTTACTGCTGAACTCCTGCAGGTGGATAGGGTTTTGGGATGTCGAGTTCAAGGTAATCATGCTGCTGCTTCTTGTCACTTATCAGTGACAGCCGCCCAGGACCTGAGTTCTGATGATGCACAAATCTCAGAAAATAATAACAGACTGTCACAGGAAAATTTTGCTTGCGAAACTGTTATGGATGTTGGGGCGGCTAAAAATCTCACTGAGGGTTGTCAAGGAGTTGTTAAGGGTGTTGATGGGGATGACAGCAAGAAGGATGATATAAGAGTGGACAAACTGCATGTGTACAGAAGGTCTATGAACAAAGAAGGTAAAAGAGCTAATTCCATGGATTTGTCTAGGAAAGATACCAAGGAGTTGGATCCTGCAGGCATAATTGATCACGATCCAAACGAATCTGCTTTAAATGCTGATGATCCAGAAAAAACAAATGAAGAAGTAGTGACTGCAGAGAATATTGATGTCAATTTGAACAGTCACGATAAAGATAAAGAAGAGGTTCTGGAAATTTGTGAAGCGCATGTTTCTGCTGATACCAATGACAAGAGTGATGTCAATACAGAAGCTGGAACTGATATCTGTGCTGAAAACAAAAGTGAAGAGCCCACACTGGCTGAACGTGCAGGTGATGGTGTTGAGACGGTATCGTATGAATTTTTAGTTAAGTGGGTAGGTAAGTCTCATATTCATAATAGCTGGGTTTCTGAATCTGAGTTAAAAGTCCTGGCAAAGAGGAAACTAGAAAACTATAAGGCAAAGTATGGAATGGCTGTTATAAATATATGCGAGGAGAGATGGAAGCAACCACAGCGGGTGATCGCTCTCCGTGGATTTAAAGATGGTTCAGGTGAAGCTTTTGTGAAATGGACTGGTTTGCCTTATGATGAATGCACTTGGGAAAGATTGGATGAACCTGTAATGAGAAATTCTCATAATCTGGTTGAATTATTTAGTCAGTTTGAGCACCAAACGTTGGTAAATGATGCTCTTAAAGATGATTCATCAAGAGGGAAGGTTAGCCGACAGCAAAATGAAATACTTGCCCTGACAGAGCAGCCCAAGGAACTAAAGGGAGGTTCATTGTTTCCCCATCAGCTTGAAGCACTCAATTGGTTGCGGAAGTGCTGGCATAAATCAAGAAATGTGATACTAGCTGATGAGATGGGGCTTGGTAAAACCATATCAGCTTGTGCTTTTATTTCATCATTATATTTTGAGTTCAAAGCCACTCTACCTTGTTTAGTCTTGGTTCCACTTTCCACAATGCCTAATTGGCTTGCTGAGTTTTCATTATGGGCCCCTGAATTGAATGTTGTGGAATACCATGGGTGTGCCAAAGCAAGAGCCATGATTCGCCAGTATGAATGGCATGCTAGTGTTCCAAATGAGTTGAACAAGAAGACATCCGCTTATAAATTTAATGTTCTTTTAACTACATATGAAATGGTTCTGGCTGATTCCACACATCTTCGTGGGGTCCCTTGGGAAGTTCTCATAGTTGATGAGGGCCATCGATTGAAAAATTCAGGAAGTAGACTTTTCAGCTTGCTTAACTCGTTCTCTTTCCAACATCGTGTACTGTTGACTGGCACCCCTCTTCAGAATAACCTTGGTGAGATGTACAACTTGCTTAATTTCTTGCAGCCTGCATCATTCCCTTCCCTGTCTTCATTTGAGGAGAGGTTTAATGATCTTACAACTTCAGAAAAAGTGGAGGAATTGAAAAAACTCGTTGCTCCACATATGCTTCGTAGGCTTAAAAAGGATGCTATGCAGAATATTCCCCCAAAGACCGAACGAATGGTTCCTGTTGAGTTGTCCTCCATCCAAGCTGAATACTATCGTGCAATGTTAACAAAGAATTATCAGATATTGCGGAATATTGGGAAAGGGGTTGCACAACAATCGATGCTGAACATTGTAATGCAGTTAAGGAAAGTCTGCAATCATCCATATCTGATACCAGGCACTGAGCCTGACTGTGGGTCTGTAGAGTTCCTTCATGACATGCGGATAAAAGCTTCAGCCAAGTTGACACTGTTGCATTCTATGCTTAAGATTTTGCACAAAGAGGGTCACAGAGTCCTTATCTTTTCCCAGATGACCAAGCTCCTTGATATCCTTGAGGATTATTTGGCCATCGAATTTGGACCTAAAACATATGAGAGAGTAGATGGATCTGTTGCAGTGGCTGATCGTCAATCTGCAATTGCACGTTTTAACCAAGACAGAAGTCGATTTGTCTTTTTGTTATCAACACGCTCTTGTGGCCTTGGGATCAATTTGGCAACTGCTGACACCGTCATTATTTATGATTCTGATTTCAACCCCCATGCTGATATTCAAGCTATGAATCGAGCACATCGAATCGGACAATCAAATAGACTTCTGGTTTATAGGCTTGTAGTTCGTGCTAGTGTTGAAGAGCGCATCTTGCAGCTTGCAAAGAAGAAACTTATGCTGGATCAGCTATTTGTGAATAAGTCAGAATCCCAAAAAGAAGTGGAAGATATTCTTAAGTGGGGGACAGAGGAACTTTTCAATGATTCTCCTGGCATGGATGGAAAAGATACAGGTGAAAATAATAGTAACAAAGATGAGGCAGTGCCAGATGTAGAGCATAAGCATAAGAAGAGGATTGGTAGCCTGGGAGATGTTTATGAAGATAAATGTACGGAAAACAGCAACAAGATTGTTTGGGATGAAACTGCGATTTTAAAGTTGCTTGACCGTGAAAATCTTCAATCTGGACTGACTGATAATGCGGAAGGAGATATGGAAAATGATATGCTTGGCTCTGTAAAGTCTATCGAATGGAATGAGGAGCCAATTGAAGAGCAGGGAGTTGAATCACCTCCTGGTGCAAGTGATGATATATGTGCTCAAAATACTGAAAGGAAAGAGGATAATGTGGTTAATGGTACAGAAGAAAATGAATGGGACAGACTCTTACGTCTTAGATGGGAGAAATATCAAAGTGAGGAGGAAGCAGCTCTTGGTCGTGGTAAGCGAATGCGGAAAGCTGTTTCTTACAGGGAAGCATATGCTGCACACCCAAGTGAAACATTAACTGAGAGTGGTGGTGTTGAAGATGAGCGTGAGCCCGAACCAGAGCCAGAGCGGGAGTACACACCCGCAGGACGAGCTCTAAAAGCAAAGTATGCTAAGCTCCGTGCTAGGCAAAAAGAACGTCTAGCTCAGAGGAATGAAATTGAAGAACCTCGTCCTAGTGAGGGACTGCCTGTTGAGTCACATCCTCAGTGTCCCATGAGTACTGCTGAAGATGTTGATCAAGCGACTGGGGATCAAGCGGCTGGATTAGTTCAATTTCTCAGTGAGAAGTCTTCAGTAATTGACTTGGAGGATAACAAATTAGATGCTTCTAAAGCCAAGACTGACTCTCCCTTAAGATTGGGCAAGCTATCAAAGCATAAAAGCAGTCGCCTCGATCTCTCTGTTAATCCGCTTGACTACACGTCTCCTGACATTTTATTTCCTAGACACCAACATCAGGGAACAAGCATGACTCATTCGATGCCCCCAAATAATTTGTTACCTGTTCTGGGACTGTGTGCCCCAAATGCTAGTCAAATAGAATCATCAAAAAAGAACTCAAGGTCGAATGGCAGACGGAGAGGAGCTGGACCAGAATTTCCATTTAGTCTAGCTCCTCATTCTGGGACCTTGCCTGAAACAGAAGCAAATGGTGATGAAGCAAAGCTATCAGATGCATCCGCAGAGGCATCACAGCGTTTGAAGAGTAGCATCCCAAATGGTGGCTTGCCATTTAGACCGTATCCTCCGGCTTTTCAAGGAAAAGGTTATGATCGCCCTGAAAGTTCTGGTGCCACCTTTTCTGATTTCCAAGAAAAGATGGCACTGCCCAACTTACCATTTGATGAGAAATTGCTATCAAGATTCCCGCTTTCATCTAAGAACATGCAAAGTCCACATCTTGACTTCTTACCTAACTTGTCCTTGGGTAGCAGACTCGAAACTGTTAATGGCTCCTTGCAAGAGCTTCCAACAATGCCACTGTTTCCCAATTTAAAATTGCCTCCACAAGATGCGCCCAGATATAATCAGCTAGACAGAGAAGTCCATCCCACCTTGGGTTTGGGCCATATGCCAACTACATTTCCTTCATTATCTGATAACCACAGAAAGGTGCTGGAAAACATAATGATGAGGACTGGTTCTGCATCAAACAACTTGTTTAAGAGGAAATCAAAAGCAGATAGCTGGTCGGAAGATGAACTTGATTTCCTCTGGGTTGGTGTCCGTAGGCATGGAAGGGGCAATTGGGATGCAATGCTAAGAGACCCAAGGTTGAAATTCTCAAAGTTCAAAACTTCAGAAGATTTGTCAGCAAGGTGGGAGGAGGAGCAACTCAAGCTTTTAGAAGGATCAGCTTTTCCAGTGTCAAAATCATCCAGAAAGACTCCCAAGTCCTCGCAGTTTCCAAGCATATCTGATGGAATGATGGCCAGGGCACTGCATGGAAGTAGACTTGTTACACCTCCAAAGTTTCAATCCCATTTGACGGACATGAAGTTGGGTTTTACTGATCTTACATCTGGCTTTCCACATTTTGAAGCATCAGATAGACTTGGTTTGCAAAATGAGCAATGCCCTCCTATTCCAACTTGGTTTCATGACAAATTCCGGGGGAATTTTGCCAGAGAATCTGCTGCTGGACCTTCAGACAGACCAGGGACATCTTCCAATGTTTCCATGGAGCAGCCATTTGTTGTCACTTCTTTTGGAAGCAGTTGCTTGGGTTCATTAGGTTTGAATCCCCCAAGCAGCTATGATTTGCAGCAGAAGGAAAATGAACAGGGTCCCTATAACTATGGGAAGTTGCCTAGTCTTCTGGATAAATCACTGAATGCTCTGCGTGATATGAATAATAATTTTGCAAGAGGTGAACCCAGTGCAGGATTCTTTCCTGATCCCAGGAGAGGTTTTTTAAAGGGTGAAGATGTTGCTGGAAGTAGTTCATCAAAGGACAAGCTACCTCATTGGCTACGGCAAGCTGTAAGTGCTCCTGCCAAACCCCCAGAACCTGACCTTCCCCCTACGGTATCGGCAATAGCTCGGTCAGTTCGATTGTTATATAGGGAGGAAGAGCCAACCATTCCTCCCTTTGTGATTCCAGGCCCACCTCCTCCACTACCAAAGGATCCAAGACGACGGCTGAAGAAGAAAAGGAAACAGAAGTTACATATCTTTAGGCGAATTTCCCAAGACATTGCCGGAAGCAGCCACTTAAGTGAAAATGCTTCAAGCTCCATTCCTGTGGCCCCATCATTTCCCTTGCTTTCACAATCAATGGCACCACCTCCAGGCTTTCCACCAATGGAATCTGACCTCAATATGCCTCGGAGTTTAAATATGTTAAACCCATTAGCCTCGTTGCCACATCTGAATCAACAGATCAAAACAACCATGGGGCTGTCTCCTTCCCCTGAAGTGCTTCAACTGGTAGCATCCTGTGTTGCTCCAGGTCCACATCTACCAGCAGTTTCTGGCATGACAAGCTCAAGTGTCCCTGACTTGAAGCCATCATTGCCAGATTCAGCTGGCCAAGTAGGACTCTTGGACTCGCAAGCTACATTGGCAAAAGATGAGGCTAAGCCGGGTTCACCTCTTAAGGAGTGCAATTCACTCCCTAAAGATAGAAAATGTGATACTGAAAGTGGGGATTCCAGCAAGACTCAGTCAGATCCCAATAGAACTGAGCGTCCCGATGCTGAGGAAGTATCTTCTGAGGGCACCGTCTCAGATCACCCTCTGAGTGACCGGGATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006323 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007289 GO:0007399 GO:0007417 GO:0007420 GO:0008150 GO:0008152 GO:0008213 GO:0008285 GO:0009506 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0016581 GO:0016604 GO:0016607 GO:0017053 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019953 GO:0021895 GO:0021953 GO:0022008 GO:0022412 GO:0022414 GO:0023051 GO:0023056 GO:0030054 GO:0030154 GO:0030182 GO:0030900 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034728 GO:0034968 GO:0035064 GO:0035092 GO:0035093 GO:0036211 GO:0042127 GO:0042393 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043486 GO:0043543 GO:0043933 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0045165 GO:0048232 GO:0048468 GO:0048513 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048609 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051704 GO:0055044 GO:0060255 GO:0060322 GO:0060850 GO:0061628 GO:0065007 GO:0070013 GO:0070603 GO:0070734 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0098532 GO:0140030 GO:0140034 GO:1901564 GO:1901796 GO:1901798 GO:1902494 GO:1902531 GO:1902533 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05165 ko05203 map05165 map05203
Pfam Domains
Protein Families
Chromo DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

2392

Amino Acids

264.7

Weight (kDa)

6.47

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 79 - 120 4.1e-09 PHD-finger
Chromo PF00385 723 - 772 1.4e-07 Chromo (CHRromatin Organisation MOdifier) domain
ResIII PF04851 816 - 987 5.6e-10 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 819 - 1108 4.2e-79 SNF2-related domain
HDA2-3 PF11496 1056 - 1273 1.5e-11 Class II histone deacetylase complex subunits 2 and 3
Helicase_C PF00271 1132 - 1246 1.3e-22 Helicase conserved C-terminal domain
DUF1087 PF06465 1427 - 1468 2.4e-06 CHD subfamily II, DUF1087
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2141, 2778
AarI CACCTGC 2 cut(s) 1372, 1979
AasI GACNNNNNNGTC 3 cut(s) 4317, 5462, 5812
Acc36I ACCTGC 3 cut(s) 94, 1372, 1979
AccB1I GGYRCC 4 cut(s) 2954, 5210, 6700, 7139
AccB7I CCANNNNNTGG 2 cut(s) 2338, 5141
AccBSI CCGCTC 1 cut(s) 4486
AccI GTMKAC 2 cut(s) 2899, 5872
AccII CGCG 1 cut(s) 994
AccIII TCCGGA 4 cut(s) 784, 814, 844, 874
AclI AACGTT 1 cut(s) 2336
AcoI YGGCCR 3 cut(s) 3501, 5850, 6949
AfaI GTAC 8 cut(s) 28, 1652, 2943, 2987, 4039, 4288, 4493, 4639
AflII CTTAAG 6 cut(s) 320, 3419, 3881, 4771, 6634, 7016
AflIII ACRYGT 1 cut(s) 4839
AhdI GACNNNNNGTC 2 cut(s) 3349, 4840
AjiI CACGTC 1 cut(s) 4842
AjuI GAANNNNNNNTTGG 4 cut(s) 4344, 4376, 5650, 5682
AleI CACNNNNGTG 2 cut(s) 4422, 6636
AloI GAACNNNNNNTCC 6 cut(s) 1392, 1424, 5613, 5645, 7093, 7125
Alw21I GWGCWC 6 cut(s) 728, 2331, 3727, 4249, 4513, 6412
Alw26I GTCTC 7 cut(s) 761, 1997, 2049, 4848, 5679, 6828, 7150
AlwNI CAGNNNCTG 7 cut(s) 45, 1465, 1931, 3335, 3557, 6431, 6893
Aor13HI TCCGGA 4 cut(s) 784, 814, 844, 874
AoxI GGCC 9 cut(s) 2661, 2872, 3501, 3634, 5485, 5850, 6523, 6666, 6949
ApaI GGGCCC 1 cut(s) 2665
ArsI GACNNNNNNTTYG 2 cut(s) 4540, 4572
AseI ATTAAT 1 cut(s) 1346
Asp700I GAANNNNTTC 7 cut(s) 575, 1863, 2811, 3876, 4104, 6361, 6840
AspLEI GCGC 4 cut(s) 1086, 1885, 3795, 5437
AsuC2I CCSGG 3 cut(s) 6032, 7005, 7169
AxyI CCTNAGG 1 cut(s) 906
BaeGI GKGCMC 5 cut(s) 353, 2665, 4942, 5860, 7142
BalI TGGCCA 3 cut(s) 3503, 5852, 6951
BamHI GGATCC 2 cut(s) 1726, 6547
BanI GGYRCC 4 cut(s) 2954, 5210, 6700, 7139
BanII GRGCYC 5 cut(s) 728, 1971, 2665, 4470, 4513
BarI GAAGNNNNNNTAC 2 cut(s) 3348, 3380
BbsI GAAGAC 6 cut(s) 114, 146, 2771, 3024, 4701, 6227
Bbv12I GWGCWC 6 cut(s) 728, 2331, 3727, 4249, 4513, 6412
BbvCI CCTCAGC 1 cut(s) 7119
BceAI ACGGC 3 cut(s) 179, 6410, 6575
BcgI CGANNNNNNTGC 4 cut(s) 3252, 3286, 4792, 4826
BciVI GTATCC 1 cut(s) 5172
BclI TGATCA 2 cut(s) 1744, 4654
BcnI CCSGG 3 cut(s) 6032, 7005, 7169
BcoDI GTCTC 7 cut(s) 761, 1997, 2049, 4848, 5679, 6828, 7150
BfmI CTRYAG 4 cut(s) 1379, 1731, 1812, 3354
BfrI CTTAAG 6 cut(s) 320, 3419, 3881, 4771, 6634, 7016
BfuAI ACCTGC 3 cut(s) 94, 1372, 1979
BfuI GTATCC 1 cut(s) 5172
BglI GCCNNNNNGGC 1 cut(s) 2638
BglII AGATCT 1 cut(s) 680
BlpI GCTNAGC 2 cut(s) 4530, 6999
BmcAI AGTACT 1 cut(s) 4639
BmeRI GACNNNNNGTC 2 cut(s) 3349, 4840
BmgBI CACGTC 1 cut(s) 4842
BmrI ACTGGG 4 cut(s) 55, 606, 4674, 6291
BmuI ACTGGG 4 cut(s) 55, 606, 4674, 6291
BoxI GACNNNNGTC 2 cut(s) 196, 3597
BpiI GAAGAC 6 cut(s) 114, 146, 2771, 3024, 4701, 6227
BplI GAGNNNNNCTC 4 cut(s) 2278, 2310, 3170, 3202
BpmI CTGGAG 6 cut(s) 284, 825, 855, 885, 6693, 6852
Bpu10I CCTNAGC 1 cut(s) 7119
Bpu1102I GCTNAGC 2 cut(s) 4530, 6999
BpuEI CTTGAG 6 cut(s) 117, 1135, 3509, 4963, 5741, 6892
BpuMI CCSGG 3 cut(s) 6032, 7005, 7169
Bsa29I ATCGAT 2 cut(s) 2878, 3272
BsaBI GATNNNNATC 2 cut(s) 1749, 4653
BsaI GGTCTC 1 cut(s) 5679
BsaWI WCCGGW 4 cut(s) 784, 814, 844, 874
BsaXI ACNNNNNCTCC 4 cut(s) 4750, 4780, 6490, 6520
Bse21I CCTNAGG 1 cut(s) 906
Bse3DI GCAATG 5 cut(s) 3219, 5682, 5999, 6615, 6932
Bse8I GATNNNNATC 2 cut(s) 1749, 4653
BseAI TCCGGA 4 cut(s) 784, 814, 844, 874
BseCI ATCGAT 2 cut(s) 2878, 3272
BseJI GATNNNNATC 2 cut(s) 1749, 4653
BseMI GCAATG 5 cut(s) 3219, 5682, 5999, 6615, 6932
BseRI GAGGAG 9 cut(s) 2168, 3056, 4202, 4361, 5016, 5025, 5759, 5762, 6522
BseSI GKGCMC 5 cut(s) 353, 2665, 4942, 5860, 7142
BseYI CCCAGC 1 cut(s) 2061
BsgI GTGCAG 3 cut(s) 2007, 4398, 6321
Bsh1236I CGCG 1 cut(s) 994
BshFI GGCC 9 cut(s) 2663, 2874, 3503, 3636, 5487, 5852, 6525, 6668, 6951
BshNI GGYRCC 4 cut(s) 2954, 5210, 6700, 7139
BshVI ATCGAT 2 cut(s) 2878, 3272
BsiHKAI GWGCWC 6 cut(s) 728, 2331, 3727, 4249, 4513, 6412
BsmAI GTCTC 7 cut(s) 761, 1997, 2049, 4848, 5679, 6828, 7150
BsmBI CGTCTC 3 cut(s) 1997, 4848, 7150
BsmI GAATGC 4 cut(s) 2258, 3409, 4383, 6259
BsnI GGCC 9 cut(s) 2663, 2874, 3503, 3636, 5487, 5852, 6525, 6668, 6951
Bso31I GGTCTC 1 cut(s) 5679
Bsp120I GGGCCC 1 cut(s) 2661
Bsp13I TCCGGA 4 cut(s) 784, 814, 844, 874
Bsp1407I TGTACA 2 cut(s) 1650, 2985
Bsp1720I GCTNAGC 2 cut(s) 4530, 6999
Bsp19I CCATGG 5 cut(s) 1204, 1692, 2689, 6099, 6813
BspANI GGCC 9 cut(s) 2663, 2874, 3503, 3636, 5487, 5852, 6525, 6668, 6951
BspDI ATCGAT 2 cut(s) 2878, 3272
BspEI TCCGGA 4 cut(s) 784, 814, 844, 874
BspFNI CGCG 1 cut(s) 994
BspHI TCATGA 2 cut(s) 3367, 6019
BspMAI CTGCAG 3 cut(s) 1383, 1735, 1816
BspMI ACCTGC 3 cut(s) 94, 1372, 1979
BspQI GCTCTTC 4 cut(s) 1959, 3783, 4194, 6486
BspT107I GGYRCC 4 cut(s) 2954, 5210, 6700, 7139
BspTI CTTAAG 6 cut(s) 320, 3419, 3881, 4771, 6634, 7016
BspTNI GGTCTC 1 cut(s) 5679
BsrBI CCGCTC 1 cut(s) 4486
BsrDI GCAATG 5 cut(s) 3219, 5682, 5999, 6615, 6932
BsrGI TGTACA 2 cut(s) 1650, 2985
BstAFI CTTAAG 6 cut(s) 320, 3419, 3881, 4771, 6634, 7016
BstAPI GCANNNNNTGC 3 cut(s) 3415, 4412, 4526
BstAUI TGTACA 2 cut(s) 1650, 2985
BstDSI CCRYGG 6 cut(s) 1204, 1692, 2191, 2689, 6099, 6813
BstENI CCTNNNNNAGG 1 cut(s) 1283
BstFNI CGCG 1 cut(s) 994
BstHHI GCGC 4 cut(s) 1086, 1885, 3795, 5437
BstMAI GTCTC 7 cut(s) 761, 1997, 2049, 4848, 5679, 6828, 7150
BstNSI RCATGY 5 cut(s) 1649, 1889, 2738, 3376, 5308
BstPAI GACNNNNGTC 2 cut(s) 196, 3597
BstSFI CTRYAG 4 cut(s) 1379, 1731, 1812, 3354
BstSLI GKGCMC 5 cut(s) 353, 2665, 4942, 5860, 7142
BstUI CGCG 1 cut(s) 994
BstV2I GAAGAC 6 cut(s) 114, 146, 2771, 3024, 4701, 6227
BstX2I RGATCY 6 cut(s) 680, 1133, 1726, 3542, 6547, 7090
BstXI CCANNNNNNTGG 2 cut(s) 1723, 6664
BstYI RGATCY 6 cut(s) 680, 1133, 1726, 3542, 6547, 7090
Bsu15I ATCGAT 2 cut(s) 2878, 3272
Bsu36I CCTNAGG 1 cut(s) 906
BsuI GTATCC 1 cut(s) 5172
BsuRI GGCC 9 cut(s) 2663, 2874, 3503, 3636, 5487, 5852, 6525, 6668, 6951
BsuTUI ATCGAT 2 cut(s) 2878, 3272
BtgI CCRYGG 6 cut(s) 1204, 1692, 2191, 2689, 6099, 6813
BtgZI GCGATG 1 cut(s) 684
BtrI CACGTC 1 cut(s) 4842
BtsI GCAGTG 5 cut(s) 353, 3558, 3975, 5243, 5858
BveI ACCTGC 3 cut(s) 94, 1372, 1979
CaiI CAGNNNCTG 7 cut(s) 45, 1465, 1931, 3335, 3557, 6431, 6893
CciI TCATGA 2 cut(s) 3367, 6019
CfoI GCGC 4 cut(s) 1086, 1885, 3795, 5437
ClaI ATCGAT 2 cut(s) 2878, 3272
CseI GACGC 1 cut(s) 7097
Csp6I GTAC 8 cut(s) 27, 1651, 2942, 2986, 4038, 4287, 4492, 4638
CviQI GTAC 8 cut(s) 27, 1651, 2942, 2986, 4038, 4287, 4492, 4638
DraI TTTAAA 7 cut(s) 390, 1770, 2200, 4083, 5415, 6336, 6756
DrdI GACNNNNNNGTC 3 cut(s) 4317, 5462, 5812
DriI GACNNNNNGTC 2 cut(s) 3349, 4840
DseDI GACNNNNNNGTC 3 cut(s) 4317, 5462, 5812
EaeI YGGCCR 3 cut(s) 3501, 5850, 6949
Eam1105I GACNNNNNGTC 2 cut(s) 3349, 4840
Ecl136II GAGCTC 2 cut(s) 726, 4511
Eco24I GRGCYC 5 cut(s) 728, 1971, 2665, 4470, 4513
Eco31I GGTCTC 1 cut(s) 5679
Eco32I GATATC 2 cut(s) 1942, 3484
Eco53kI GAGCTC 2 cut(s) 726, 4511
Eco81I CCTNAGG 1 cut(s) 906
EcoICRI GAGCTC 2 cut(s) 726, 4511
EcoNI CCTNNNNNAGG 1 cut(s) 1283
EcoO109I RGGNCCY 6 cut(s) 1276, 1462, 2662, 2842, 5046, 6206
EcoRV GATATC 2 cut(s) 1942, 3484
EcoT22I ATGCAT 2 cut(s) 988, 5098
EcoT38I GRGCYC 5 cut(s) 728, 1971, 2665, 4470, 4513
Esp3I CGTCTC 3 cut(s) 1997, 4848, 7150
FalI AAGNNNNNCTT 6 cut(s) 3864, 3896, 4344, 4376, 5607, 5639
FauI CCCGC 4 cut(s) 2169, 4479, 4507, 5295
FauNDI CATATG 5 cut(s) 2803, 3108, 3526, 4408, 5490
FbaI TGATCA 2 cut(s) 1744, 4654
FblI GTMKAC 2 cut(s) 2899, 5872
FriOI GRGCYC 5 cut(s) 728, 1971, 2665, 4470, 4513
GlaI GCGC 4 cut(s) 1085, 1884, 3794, 5436
GsaI CCCAGC 1 cut(s) 2065
GsuI CTGGAG 6 cut(s) 284, 825, 855, 885, 6693, 6852
HaeIII GGCC 9 cut(s) 2663, 2874, 3503, 3636, 5487, 5852, 6525, 6668, 6951
HgaI GACGC 1 cut(s) 7097
HhaI GCGC 4 cut(s) 1086, 1885, 3795, 5437
Hin6I GCGC 4 cut(s) 1084, 1883, 3793, 5435
HinP1I GCGC 4 cut(s) 1084, 1883, 3793, 5435
HincII GTYRAC 4 cut(s) 21, 2949, 3219, 3399
HindII GTYRAC 4 cut(s) 21, 2949, 3219, 3399
HindIII AAGCTT 4 cut(s) 71, 2217, 3384, 5759
HpaI GTTAAC 1 cut(s) 3219
Hpy99I CGWCG 2 cut(s) 165, 6561
HpyCH4IV ACGT 7 cut(s) 64, 1984, 2336, 3580, 4318, 4555, 4841
HpySE526I ACGT 7 cut(s) 64, 1984, 2336, 3580, 4318, 4555, 4841
HspAI GCGC 4 cut(s) 1084, 1883, 3793, 5435
KflI GGGWCCC 2 cut(s) 2842, 6206
Kpn2I TCCGGA 4 cut(s) 784, 814, 844, 874
Ksp22I TGATCA 2 cut(s) 1744, 4654
KspAI GTTAAC 1 cut(s) 3219
LguI GCTCTTC 4 cut(s) 1959, 3783, 4194, 6486
MaeII ACGT 7 cut(s) 64, 1984, 2336, 3580, 4318, 4555, 4841
MbiI CCGCTC 1 cut(s) 4486
MfeI CAATTG 4 cut(s) 2473, 3573, 4194, 5665
MflI RGATCY 6 cut(s) 680, 1133, 1726, 3542, 6547, 7090
MlsI TGGCCA 3 cut(s) 3503, 5852, 6951
MluNI TGGCCA 3 cut(s) 3503, 5852, 6951
MmeI TCCRAC 5 cut(s) 1704, 2956, 5414, 5592, 6032
Mox20I TGGCCA 3 cut(s) 3503, 5852, 6951
Mph1103I ATGCAT 2 cut(s) 988, 5098
MroI TCCGGA 4 cut(s) 784, 814, 844, 874
MroXI GAANNNNTTC 7 cut(s) 575, 1863, 2811, 3876, 4104, 6361, 6840
MscI TGGCCA 3 cut(s) 3503, 5852, 6951
MslI CAYNNNNRTG 8 cut(s) 2694, 2739, 2835, 3287, 4422, 5549, 6636, 6662
Msp20I TGGCCA 3 cut(s) 3503, 5852, 6951
MspA1I CMGCKG 6 cut(s) 626, 794, 824, 854, 2176, 6947
MspCI CTTAAG 6 cut(s) 320, 3419, 3881, 4771, 6634, 7016
MunI CAATTG 4 cut(s) 2473, 3573, 4194, 5665
Mva1269I GAATGC 4 cut(s) 2258, 3409, 4383, 6259
MvnI CGCG 1 cut(s) 994
NciI CCSGG 3 cut(s) 6032, 7005, 7169
NcoI CCATGG 5 cut(s) 1204, 1692, 2689, 6099, 6813
NdeI CATATG 5 cut(s) 2803, 3108, 3526, 4408, 5490
NsiI ATGCAT 2 cut(s) 988, 5098
NspI RCATGY 5 cut(s) 1649, 1889, 2738, 3376, 5308
OliI CACNNNNGTG 2 cut(s) 4422, 6636
PaeI GCATGC 1 cut(s) 2738
PagI TCATGA 2 cut(s) 3367, 6019
PaqCI CACCTGC 2 cut(s) 1372, 1979
PasI CCCWGGG 1 cut(s) 1157
PciSI GCTCTTC 4 cut(s) 1959, 3783, 4194, 6486
PcsI WCGNNNNNNNCGW 4 cut(s) 1755, 3727, 4372, 6469
PctI GAATGC 4 cut(s) 2258, 3409, 4383, 6259
PdmI GAANNNNTTC 7 cut(s) 575, 1863, 2811, 3876, 4104, 6361, 6840
PflFI GACNNNGTC 2 cut(s) 3665, 7084
PflMI CCANNNNNTGG 2 cut(s) 2338, 5141
PpuMI RGGWCCY 5 cut(s) 1276, 1462, 2842, 5046, 6206
PshAI GACNNNNGTC 2 cut(s) 196, 3597
PshBI ATTAAT 1 cut(s) 1346
PsiI TTATAA 2 cut(s) 2141, 2778
Psp124BI GAGCTC 2 cut(s) 728, 4513
Psp1406I AACGTT 1 cut(s) 2336
Psp5II RGGWCCY 5 cut(s) 1276, 1462, 2842, 5046, 6206
PspFI CCCAGC 1 cut(s) 2061
PspOMI GGGCCC 1 cut(s) 2661
PspPPI RGGWCCY 5 cut(s) 1276, 1462, 2842, 5046, 6206
PstI CTGCAG 3 cut(s) 1383, 1735, 1816
PstNI CAGNNNCTG 7 cut(s) 45, 1465, 1931, 3335, 3557, 6431, 6893
PsuI RGATCY 6 cut(s) 680, 1133, 1726, 3542, 6547, 7090
PsyI GACNNNGTC 2 cut(s) 3665, 7084
PvuII CAGCTG 5 cut(s) 626, 794, 824, 854, 6947
RsaI GTAC 8 cut(s) 28, 1652, 2943, 2987, 4039, 4288, 4493, 4639
RsaNI GTAC 8 cut(s) 27, 1651, 2942, 2986, 4038, 4287, 4492, 4638
RseI CAYNNNNRTG 8 cut(s) 2694, 2739, 2835, 3287, 4422, 5549, 6636, 6662
SacI GAGCTC 2 cut(s) 728, 4513
SapI GCTCTTC 4 cut(s) 1959, 3783, 4194, 6486
SbfI CCTGCAGG 2 cut(s) 1383, 1735
ScaI AGTACT 1 cut(s) 4639
SdaI CCTGCAGG 2 cut(s) 1383, 1735
SfcI CTRYAG 4 cut(s) 1379, 1731, 1812, 3354
SmiMI CAYNNNNRTG 8 cut(s) 2694, 2739, 2835, 3287, 4422, 5549, 6636, 6662
SphI GCATGC 1 cut(s) 2738
Sse8387I CCTGCAGG 2 cut(s) 1383, 1735
SspI AATATT 3 cut(s) 1822, 3145, 3247
SstI GAGCTC 2 cut(s) 728, 4513
TaiI ACGT 7 cut(s) 67, 1987, 2339, 3583, 4321, 4558, 4844
TaqII GACCGA 2 cut(s) 3173, 6453
TatI WGTACW 6 cut(s) 26, 1650, 2941, 2985, 4491, 4637
TauI GCSGC 3 cut(s) 1457, 1556, 4679
TspGWI ACGGA 7 cut(s) 904, 2180, 4055, 4526, 5011, 5636, 5924
Tth111I GACNNNGTC 2 cut(s) 3665, 7084
Van91I CCANNNNNTGG 2 cut(s) 2338, 5141
Vha464I CTTAAG 6 cut(s) 320, 3419, 3881, 4771, 6634, 7016
VspI ATTAAT 1 cut(s) 1346
XagI CCTNNNNNAGG 1 cut(s) 1283
XceI RCATGY 5 cut(s) 1649, 1889, 2738, 3376, 5308
XcmI CCANNNNNNNNNTGG 2 cut(s) 5479, 6097
XmiI GTMKAC 2 cut(s) 2899, 5872
XmnI GAANNNNTTC 7 cut(s) 575, 1863, 2811, 3876, 4104, 6361, 6840
ZrmI AGTACT 1 cut(s) 4639
Zsp2I ATGCAT 2 cut(s) 988, 5098
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.