Rorug05G0061000

DUF1087

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0005784
Physical Location & Seq
Reverse (-)
5293944 .. 5294701
758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0061000.1

Sequence Viewer

Length: 447 bp
ATGTCATCGCCGCCGCCGTCGTCGGCGTTCTCCGTGATCTGCCTGCTCCACGCGGCGATCGCCATCGCTTGCGGCGCGTCCATGATGTTCTACATGTCGGATCTGTACACCTTGGGGCACGGAGTCGAGACGGCGCAGAAGCTTCTCGGGTCGACGCCGCACGACCAGCTCCTGATCCGGACCTCCGACTCGTTCTCCGGGTTGCTCCTCTTCGCGATCGGGTTCCTGCTCCTCATGGTCTCCTTCGTCAGAGATCGCGAGTTCCAGAGCTTCTTCGCCAAGGGCTGCACGCTCCTCCATGTCTTCATGGGCCTCTGGCGCTGCTACTTCGAGCGCAGGGTCGAGGATCTCGCCTGGGATTGGCTCCGGCAGACCGTCGGCGACGTCGTTTTGGCCCTCTCTTGGGTCTTCTTCCTTGTGTACTCGTGGAGAGAAAAGTACGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006323 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007289 GO:0007399 GO:0007417 GO:0007420 GO:0008150 GO:0008152 GO:0008213 GO:0008285 GO:0009506 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0016581 GO:0016604 GO:0016607 GO:0017053 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019953 GO:0021895 GO:0021953 GO:0022008 GO:0022412 GO:0022414 GO:0023051 GO:0023056 GO:0030054 GO:0030154 GO:0030182 GO:0030900 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034728 GO:0034968 GO:0035064 GO:0035092 GO:0035093 GO:0036211 GO:0042127 GO:0042393 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043486 GO:0043543 GO:0043933 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0045165 GO:0048232 GO:0048468 GO:0048513 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048609 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051704 GO:0055044 GO:0060255 GO:0060322 GO:0060850 GO:0061628 GO:0065007 GO:0070013 GO:0070603 GO:0070734 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0098532 GO:0140030 GO:0140034 GO:1901564 GO:1901796 GO:1901798 GO:1902494 GO:1902531 GO:1902533 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05165 ko05203 map05165 map05203
Pfam Domains
Protein Families
Chromo DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

148

Amino Acids

16.88

Weight (kDa)

6.04

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7865 PF25266 7 - 136 3e-68 Domain of unknown function (DUF7865)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 387
AccI GTMKAC 1 cut(s) 152
AccII CGCG 4 cut(s) 53, 77, 215, 258
AccIII TCCGGA 1 cut(s) 177
AciI CCGC 5 cut(s) 11, 14, 53, 72, 158
AclWI GGATC 3 cut(s) 108, 169, 354
AcyI GRCGYC 2 cut(s) 155, 384
AfaI GTAC 3 cut(s) 107, 422, 440
AfiI CCNNNNNNNGG 3 cut(s) 360, 402, 403
AflIII ACRYGT 1 cut(s) 93
AjnI CCWGG 1 cut(s) 353
AluBI AGCT 3 cut(s) 142, 169, 270
AluI AGCT 3 cut(s) 142, 169, 270
Alw26I GTCTC 2 cut(s) 122, 244
AlwI GGATC 3 cut(s) 108, 169, 354
AlwNI CAGNNNCTG 1 cut(s) 172
Ama87I CYCGRG 1 cut(s) 146
Aor13HI TCCGGA 1 cut(s) 177
AoxI GGCC 2 cut(s) 310, 393
ApeKI GCWGC 2 cut(s) 285, 321
AsiSI GCGATCGC 1 cut(s) 60
AspLEI GCGC 4 cut(s) 77, 136, 321, 336
AspS9I GGNCC 3 cut(s) 180, 310, 394
AsuC2I CCSGG 1 cut(s) 199
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 1 cut(s) 180
BaeGI GKGCMC 1 cut(s) 120
BauI CACGAG 1 cut(s) 424
BbsI GAAGAC 2 cut(s) 295, 400
BbvI GCAGC 2 cut(s) 272, 308
BccI CCATC 1 cut(s) 71
BceAI ACGGC 1 cut(s) 147
BciT130I CCWGG 1 cut(s) 355
BcnI CCSGG 1 cut(s) 199
BcoDI GTCTC 2 cut(s) 122, 244
BfoI RGCGCY 1 cut(s) 322
BisI GCNGC 7 cut(s) 11, 14, 54, 73, 158, 286, 322
BlsI GCNGC 7 cut(s) 12, 15, 55, 74, 159, 287, 323
Bme1390I CCNGG 2 cut(s) 199, 355
Bme18I GGWCC 1 cut(s) 180
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 3 cut(s) 180, 310, 394
BmiI GGNNCC 2 cut(s) 224, 365
BmrFI CCNGG 2 cut(s) 199, 355
BpiI GAAGAC 2 cut(s) 295, 400
BpuMI CCSGG 1 cut(s) 199
BsaBI GATNNNNATC 1 cut(s) 62
BsaHI GRCGYC 2 cut(s) 155, 384
BsaI GGTCTC 1 cut(s) 244
BsaJI CCNNGG 3 cut(s) 111, 279, 354
BsaWI WCCGGW 1 cut(s) 177
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 3 cut(s) 360, 402, 403
Bse8I GATNNNNATC 1 cut(s) 62
BseAI TCCGGA 1 cut(s) 177
BseBI CCWGG 1 cut(s) 355
BseDI CCNNGG 3 cut(s) 111, 279, 354
BseJI GATNNNNATC 1 cut(s) 62
BseLI CCNNNNNNNGG 3 cut(s) 360, 402, 403
BseRI GAGGAG 3 cut(s) 197, 221, 284
BseSI GKGCMC 1 cut(s) 120
BseXI GCAGC 2 cut(s) 272, 308
BsgI GTGCAG 1 cut(s) 271
Bsh1236I CGCG 4 cut(s) 53, 77, 215, 258
Bsh1285I CGRYCG 2 cut(s) 60, 219
BshFI GGCC 2 cut(s) 312, 395
BsiEI CGRYCG 2 cut(s) 60, 219
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 3 cut(s) 178, 198, 367
BslI CCNNNNNNNGG 3 cut(s) 360, 402, 403
BsmAI GTCTC 2 cut(s) 122, 244
BsmBI CGTCTC 1 cut(s) 122
BsnI GGCC 2 cut(s) 312, 395
Bso31I GGTCTC 1 cut(s) 244
BsoBI CYCGRG 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 120
Bsp13I TCCGGA 1 cut(s) 177
Bsp1407I TGTACA 1 cut(s) 105
Bsp143I GATC 7 cut(s) 36, 57, 100, 174, 216, 253, 346
Bsp68I TCGCGA 2 cut(s) 215, 258
BspACI CCGC 5 cut(s) 11, 14, 53, 72, 158
BspANI GGCC 2 cut(s) 312, 395
BspEI TCCGGA 1 cut(s) 177
BspFNI CGCG 4 cut(s) 53, 77, 215, 258
BspLI GGNNCC 2 cut(s) 224, 365
BspPI GGATC 3 cut(s) 108, 169, 354
BspTNI GGTCTC 1 cut(s) 244
BsrGI TGTACA 1 cut(s) 105
BssECI CCNNGG 3 cut(s) 111, 279, 354
BssMI GATC 7 cut(s) 36, 57, 100, 174, 216, 253, 346
BssNI GRCGYC 2 cut(s) 155, 384
BssSI CACGAG 1 cut(s) 424
BssT1I CCWWGG 2 cut(s) 111, 279
Bst2BI CACGAG 1 cut(s) 424
Bst2UI CCWGG 1 cut(s) 355
Bst4CI ACNGT 1 cut(s) 376
Bst6I CTCTTC 1 cut(s) 215
BstACI GRCGYC 2 cut(s) 155, 384
BstAUI TGTACA 1 cut(s) 105
BstC8I GCNNGC 3 cut(s) 44, 70, 290
BstFNI CGCG 4 cut(s) 53, 77, 215, 258
BstH2I RGCGCY 1 cut(s) 322
BstHHI GCGC 4 cut(s) 77, 136, 321, 336
BstKTI GATC 7 cut(s) 39, 60, 103, 177, 219, 256, 349
BstMAI GTCTC 2 cut(s) 122, 244
BstMBI GATC 7 cut(s) 36, 57, 100, 174, 216, 253, 346
BstMCI CGRYCG 2 cut(s) 60, 219
BstMWI GCNNNNNNNGC 4 cut(s) 59, 74, 166, 318
BstNI CCWGG 1 cut(s) 355
BstNSI RCATGY 1 cut(s) 97
BstSCI CCNGG 2 cut(s) 197, 353
BstSLI GKGCMC 1 cut(s) 120
BstUI CGCG 4 cut(s) 53, 77, 215, 258
BstV1I GCAGC 2 cut(s) 272, 308
BstV2I GAAGAC 2 cut(s) 295, 400
BstX2I RGATCY 2 cut(s) 100, 346
BstYI RGATCY 2 cut(s) 100, 346
BsuRI GGCC 2 cut(s) 312, 395
BtgZI GCGATG 1 cut(s) 49
BtuMI TCGCGA 2 cut(s) 215, 258
Cac8I GCNNGC 3 cut(s) 44, 70, 290
CaiI CAGNNNCTG 1 cut(s) 172
CfoI GCGC 4 cut(s) 77, 136, 321, 336
Cfr13I GGNCC 3 cut(s) 180, 310, 394
CseI GACGC 2 cut(s) 66, 163
Csp6I GTAC 3 cut(s) 106, 421, 439
CviAII CATG 5 cut(s) 82, 94, 235, 299, 307
CviJI RGCY 7 cut(s) 142, 169, 270, 285, 312, 364, 395
CviKI_1 RGCY 7 cut(s) 142, 169, 270, 285, 312, 364, 395
CviQI GTAC 3 cut(s) 106, 421, 439
DpnI GATC 7 cut(s) 38, 59, 102, 176, 218, 255, 348
DpnII GATC 7 cut(s) 36, 57, 100, 174, 216, 253, 346
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Eco130I CCWWGG 2 cut(s) 111, 279
Eco31I GGTCTC 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 180
Eco88I CYCGRG 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 353
EcoT14I CCWWGG 2 cut(s) 111, 279
ErhI CCWWGG 2 cut(s) 111, 279
Esp3I CGTCTC 1 cut(s) 122
FaeI CATG 5 cut(s) 85, 97, 238, 302, 310
FaiI YATR 5 cut(s) 83, 95, 236, 300, 308
FatI CATG 5 cut(s) 81, 93, 234, 298, 306
FblI GTMKAC 1 cut(s) 152
Fnu4HI GCNGC 7 cut(s) 11, 14, 54, 73, 158, 286, 322
Fsp4HI GCNGC 7 cut(s) 11, 14, 54, 73, 158, 286, 322
GlaI GCGC 4 cut(s) 76, 135, 320, 335
GluI GCNGC 7 cut(s) 11, 14, 54, 73, 158, 286, 322
HaeII RGCGCY 1 cut(s) 322
HaeIII GGCC 2 cut(s) 312, 395
HapII CCGG 3 cut(s) 178, 198, 367
HgaI GACGC 2 cut(s) 66, 163
HhaI GCGC 4 cut(s) 77, 136, 321, 336
Hin1I GRCGYC 2 cut(s) 155, 384
Hin1II CATG 5 cut(s) 85, 97, 238, 302, 310
Hin6I GCGC 4 cut(s) 75, 134, 319, 334
HinP1I GCGC 4 cut(s) 75, 134, 319, 334
HincII GTYRAC 1 cut(s) 153
HindII GTYRAC 1 cut(s) 153
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 2 cut(s) 123, 188
HpaII CCGG 3 cut(s) 178, 198, 367
Hpy166II GTNNAC 3 cut(s) 108, 153, 421
Hpy188I TCNGA 3 cut(s) 100, 187, 251
Hpy188III TCNNGA 6 cut(s) 127, 172, 178, 214, 257, 265
Hpy8I GTNNAC 3 cut(s) 108, 153, 421
Hpy99I CGWCG 6 cut(s) 22, 25, 157, 380, 386, 389
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 1 cut(s) 376
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 1 cut(s) 288
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 74, 166, 318
HpySE526I ACGT 1 cut(s) 384
Hsp92I GRCGYC 2 cut(s) 155, 384
Hsp92II CATG 5 cut(s) 85, 97, 238, 302, 310
HspAI GCGC 4 cut(s) 75, 134, 319, 334
Kpn2I TCCGGA 1 cut(s) 177
Kzo9I GATC 7 cut(s) 36, 57, 100, 174, 216, 253, 346
LmnI GCTCC 6 cut(s) 51, 174, 210, 234, 297, 369
Lsp1109I GCAGC 2 cut(s) 272, 308
MaeII ACGT 1 cut(s) 384
MalI GATC 7 cut(s) 38, 59, 102, 176, 218, 255, 348
MboI GATC 7 cut(s) 36, 57, 100, 174, 216, 253, 346
MboII GAAGA 5 cut(s) 202, 265, 295, 400, 403
MflI RGATCY 2 cut(s) 100, 346
MhlI GDGCHC 1 cut(s) 120
MlyI GAGTC 2 cut(s) 132, 182
MmeI TCCRAC 2 cut(s) 78, 210
MnlI CCTC 7 cut(s) 193, 218, 242, 305, 323, 337, 407
MroI TCCGGA 1 cut(s) 177
MseI TTAA 1 cut(s) 445
MspI CCGG 3 cut(s) 178, 198, 367
MspR9I CCNGG 2 cut(s) 199, 355
MvaI CCWGG 1 cut(s) 355
MvnI CGCG 4 cut(s) 53, 77, 215, 258
MwoI GCNNNNNNNGC 4 cut(s) 59, 74, 166, 318
NciI CCSGG 1 cut(s) 199
NdeII GATC 7 cut(s) 36, 57, 100, 174, 216, 253, 346
NlaIII CATG 5 cut(s) 85, 97, 238, 302, 310
NlaIV GGNNCC 2 cut(s) 224, 365
NruI TCGCGA 2 cut(s) 215, 258
NspI RCATGY 1 cut(s) 97
PciI ACATGT 1 cut(s) 93
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 384
PkrI GCNGC 7 cut(s) 12, 15, 55, 74, 159, 287, 323
Ple19I CGATCG 2 cut(s) 60, 219
PleI GAGTC 2 cut(s) 131, 182
PpsI GAGTC 2 cut(s) 131, 182
PscI ACATGT 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 353
PspGI CCWGG 1 cut(s) 353
PspN4I GGNNCC 2 cut(s) 224, 365
PspPI GGNCC 3 cut(s) 180, 310, 394
PstNI CAGNNNCTG 1 cut(s) 172
PsuI RGATCY 2 cut(s) 100, 346
PvuI CGATCG 2 cut(s) 60, 219
RgaI GCGATCGC 1 cut(s) 60
RruI TCGCGA 2 cut(s) 215, 258
RsaI GTAC 3 cut(s) 107, 422, 440
RsaNI GTAC 3 cut(s) 106, 421, 439
SalI GTCGAC 1 cut(s) 151
SaqAI TTAA 1 cut(s) 445
SatI GCNGC 7 cut(s) 11, 14, 54, 73, 158, 286, 322
Sau3AI GATC 7 cut(s) 36, 57, 100, 174, 216, 253, 346
Sau96I GGNCC 3 cut(s) 180, 310, 394
SchI GAGTC 2 cut(s) 132, 182
ScrFI CCNGG 2 cut(s) 199, 355
SduI GDGCHC 1 cut(s) 120
SetI ASST 6 cut(s) 113, 144, 171, 185, 272, 387
SfaAI GCGATCGC 1 cut(s) 60
SgfI GCGATCGC 1 cut(s) 60
SinI GGWCC 1 cut(s) 180
SsiI CCGC 5 cut(s) 11, 14, 53, 72, 158
StyD4I CCNGG 2 cut(s) 197, 353
StyI CCWWGG 2 cut(s) 111, 279
TaaI ACNGT 1 cut(s) 376
TaiI ACGT 1 cut(s) 387
TaqI TCGA 4 cut(s) 126, 152, 330, 342
TatI WGTACW 2 cut(s) 105, 420
TauI GCSGC 5 cut(s) 13, 16, 56, 75, 160
Tru1I TTAA 1 cut(s) 445
Tru9I TTAA 1 cut(s) 445
TseI GCWGC 2 cut(s) 285, 321
TspDTI ATGAA 1 cut(s) 295
TspGWI ACGGA 2 cut(s) 22, 135
VpaK11BI GGWCC 1 cut(s) 180
XceI RCATGY 1 cut(s) 97
XmiI GTMKAC 1 cut(s) 152
ZraI GACGTC 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.