Rorug05G0061400

DUF1087

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0005784
Physical Location & Seq
Reverse (-)
5314992 .. 5316908
1917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0061400.1

Sequence Viewer

Length: 882 bp
ATGGCCAGAACTGTGGCGAGCACTGCACGGCAGTTGTTGGCGGCGAGTTTCTCCGGCATGGTTTTCGGGTTTCTAGAAGACGGAGGTCAGGAATTCAAGCAGAGTTACAGCAGCAGCGATGGGAGTAGTCAAGAAAATGAGGCAATGTTCGACATCGAGGATGATCAAGAAGAGGCCGAGGAGGACGAAAAGGATAAGAAGTTCTGGGACAACCAGAACCAGATTTTAGAGGCAACGTTATGCAGGACTAGTTCTCTAGAGACGAAGATTAGGAGCGTGACAAAGGAAACGGTGAAGGAGTCGGGGGAGGTGGTGTGCGGTTGTGGGAAGGCAGCTAGTGGTTGCCGGAGCTGCCTTATGAGGGAAGTTTCCGGCAGGCTTTGCAATGCTGGTTACAACAGTGCCATATGCAAGTCCAAGTGGAGGAGTTCGCCGGATATTCCTTCAGGAGAGCACACATTTTTGGATGTGGTAGTGGACAATTCAAGCTCAAGGAAAGGAGAGGTGAGGGTGATCATAGAACTCAACTTCAGAGCCGAGTTTGAGATGGCGAGAGCAAGCGACGAATACAACACATTGGTGCAACGACTTCCCGAAATCTTTGTCGGCAAGGTCGAAAGACTTCACAATTTGATCAAAATTTTGTGTTCGGCTGCCAAGAAGTGTATGAAGGAGAAGAAAATGCACATGGGGCCGTGGAGGAAGCAAAAGTACATGCAAGCTAAATGGCTTGGTGCCTGCAAGAGAACGACGTCAGCACCGCCTTTGTCAATGGGGCAATCGGATCAGCTGCGGCCGAGGCCGAAGGCATCGATGCTAACTGTTGATTTGCTAGGAGAGATGATGCCTAATATGCACTGCAAAGCGGTTGCAGTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006323 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007289 GO:0007399 GO:0007417 GO:0007420 GO:0008150 GO:0008152 GO:0008213 GO:0008285 GO:0009506 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0016581 GO:0016604 GO:0016607 GO:0017053 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019953 GO:0021895 GO:0021953 GO:0022008 GO:0022412 GO:0022414 GO:0023051 GO:0023056 GO:0030054 GO:0030154 GO:0030182 GO:0030900 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034728 GO:0034968 GO:0035064 GO:0035092 GO:0035093 GO:0036211 GO:0042127 GO:0042393 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043486 GO:0043543 GO:0043933 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0045165 GO:0048232 GO:0048468 GO:0048513 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048609 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051704 GO:0055044 GO:0060255 GO:0060322 GO:0060850 GO:0061628 GO:0065007 GO:0070013 GO:0070603 GO:0070734 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0098532 GO:0140030 GO:0140034 GO:1901564 GO:1901796 GO:1901798 GO:1902494 GO:1902531 GO:1902533 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05165 ko05203 map05165 map05203
Pfam Domains
Protein Families
Chromo DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

293

Amino Acids

32.71

Weight (kDa)

7.95

Isoelectric Point (pI)

51.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 19 - 249 2.5e-81 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 755
AccB1I GGYRCC 1 cut(s) 734
AciI CCGC 5 cut(s) 41, 318, 761, 793, 866
AclI AACGTT 1 cut(s) 236
AclWI GGATC 1 cut(s) 792
AcoI YGGCCR 2 cut(s) 3, 794
AcsI RAATTY 2 cut(s) 92, 639
AcuI CTGAAG 2 cut(s) 429, 514
AcyI GRCGYC 1 cut(s) 752
AfaI GTAC 1 cut(s) 713
AfiI CCNNNNNNNGG 2 cut(s) 361, 423
AgsI TTSAA 2 cut(s) 97, 486
AhlI ACTAGT 1 cut(s) 248
AleI CACNNNNGTG 1 cut(s) 578
AloI GAACNNNNNNTCC 2 cut(s) 185, 217
AluBI AGCT 5 cut(s) 335, 351, 489, 722, 790
AluI AGCT 5 cut(s) 335, 351, 489, 722, 790
Alw21I GWGCWC 2 cut(s) 23, 456
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 1 cut(s) 792
AoxI GGCC 5 cut(s) 3, 174, 692, 794, 800
ApeKI GCWGC 6 cut(s) 111, 114, 332, 351, 653, 790
ApoI RAATTY 2 cut(s) 92, 639
ArsI GACNNNNNNTTYG 2 cut(s) 588, 620
Asp700I GAANNNNTTC 1 cut(s) 621
AspS9I GGNCC 1 cut(s) 692
AsuHPI GGTGA 3 cut(s) 304, 517, 523
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 734
BarI GAAGNNNNNNTAC 2 cut(s) 695, 727
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 2 cut(s) 23, 456
BbvI GCAGC 6 cut(s) 123, 126, 338, 344, 640, 777
BccI CCATC 2 cut(s) 113, 541
BceAI ACGGC 2 cut(s) 44, 679
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BclI TGATCA 3 cut(s) 163, 513, 633
BcoDI GTCTC 1 cut(s) 254
BcuI ACTAGT 1 cut(s) 248
BfaI CTAG 5 cut(s) 74, 249, 257, 336, 833
BisI GCNGC 8 cut(s) 42, 112, 115, 333, 352, 654, 791, 794
BlsI GCNGC 8 cut(s) 43, 113, 116, 334, 353, 655, 792, 795
BmgT120I GGNCC 1 cut(s) 692
BmiI GGNNCC 2 cut(s) 693, 736
BmsI GCATC 3 cut(s) 804, 818, 834
BoxI GACNNNNGTC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 475
Bsa29I ATCGAT 1 cut(s) 812
BsaHI GRCGYC 1 cut(s) 752
BsaJI CCNNGG 3 cut(s) 177, 695, 797
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 423
Bse3DI GCAATG 2 cut(s) 150, 391
BseCI ATCGAT 1 cut(s) 812
BseDI CCNNGG 3 cut(s) 177, 695, 797
BseGI GGATG 2 cut(s) 166, 472
BseLI CCNNNNNNNGG 2 cut(s) 361, 423
BseMI GCAATG 2 cut(s) 150, 391
BseRI GAGGAG 2 cut(s) 194, 439
BseX3I CGGCCG 1 cut(s) 794
BseXI GCAGC 6 cut(s) 123, 126, 338, 344, 640, 777
BsgI GTGCAG 1 cut(s) 9
Bsh1285I CGRYCG 1 cut(s) 797
BshFI GGCC 5 cut(s) 5, 176, 694, 796, 802
BshNI GGYRCC 1 cut(s) 734
BshVI ATCGAT 1 cut(s) 812
BsiEI CGRYCG 1 cut(s) 797
BsiHKAI GWGCWC 2 cut(s) 23, 456
BsiSI CCGG 4 cut(s) 54, 346, 372, 434
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 2 cut(s) 361, 423
BsmAI GTCTC 1 cut(s) 254
BsmBI CGTCTC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 221
BsnI GGCC 5 cut(s) 5, 176, 694, 796, 802
Bsp1286I GDGCHC 2 cut(s) 23, 456
Bsp143I GATC 4 cut(s) 163, 513, 633, 784
BspACI CCGC 5 cut(s) 41, 318, 761, 793, 866
BspANI GGCC 5 cut(s) 5, 176, 694, 796, 802
BspDI ATCGAT 1 cut(s) 812
BspLI GGNNCC 2 cut(s) 693, 736
BspPI GGATC 1 cut(s) 792
BspT107I GGYRCC 1 cut(s) 734
BsrDI GCAATG 2 cut(s) 150, 391
BssECI CCNNGG 3 cut(s) 177, 695, 797
BssMI GATC 4 cut(s) 163, 513, 633, 784
BssNI GRCGYC 1 cut(s) 752
Bst4CI ACNGT 4 cut(s) 13, 292, 401, 823
Bst6I CTCTTC 1 cut(s) 165
BstACI GRCGYC 1 cut(s) 752
BstAPI GCANNNNNTGC 1 cut(s) 381
BstC8I GCNNGC 5 cut(s) 19, 377, 559, 720, 739
BstDSI CCRYGG 1 cut(s) 695
BstF5I GGATG 2 cut(s) 166, 472
BstKTI GATC 4 cut(s) 166, 516, 636, 787
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 4 cut(s) 163, 513, 633, 784
BstMCI CGRYCG 1 cut(s) 797
BstMWI GCNNNNNNNGC 6 cut(s) 23, 351, 381, 691, 799, 853
BstNSI RCATGY 1 cut(s) 718
BstPAI GACNNNNGTC 1 cut(s) 84
BstV1I GCAGC 6 cut(s) 123, 126, 338, 344, 640, 777
BstV2I GAAGAC 1 cut(s) 84
BstXI CCANNNNNNTGG 1 cut(s) 13
BstZI CGGCCG 1 cut(s) 794
Bsu15I ATCGAT 1 cut(s) 812
BsuRI GGCC 5 cut(s) 5, 176, 694, 796, 802
BsuTUI ATCGAT 1 cut(s) 812
BtgI CCRYGG 1 cut(s) 695
BtgZI GCGATG 1 cut(s) 132
BtsCI GGATG 2 cut(s) 166, 472
BtsI GCAGTG 2 cut(s) 21, 856
BtsIMutI CAGTG 3 cut(s) 21, 406, 856
Cac8I GCNNGC 5 cut(s) 19, 377, 559, 720, 739
Cfr13I GGNCC 1 cut(s) 692
ClaI ATCGAT 1 cut(s) 812
Csp6I GTAC 1 cut(s) 712
CviAII CATG 3 cut(s) 58, 688, 715
CviQI GTAC 1 cut(s) 712
DpnI GATC 4 cut(s) 165, 515, 635, 786
DpnII GATC 4 cut(s) 163, 513, 633, 784
EaeI YGGCCR 2 cut(s) 3, 794
EagI CGGCCG 1 cut(s) 794
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
EclXI CGGCCG 1 cut(s) 794
Eco52I CGGCCG 1 cut(s) 794
Eco57I CTGAAG 2 cut(s) 429, 514
EcoRI GAATTC 1 cut(s) 92
Esp3I CGTCTC 1 cut(s) 254
FaeI CATG 3 cut(s) 61, 691, 718
FaqI GGGAC 1 cut(s) 221
FatI CATG 3 cut(s) 57, 687, 714
FauNDI CATATG 1 cut(s) 407
FbaI TGATCA 3 cut(s) 163, 513, 633
Fnu4HI GCNGC 8 cut(s) 42, 112, 115, 333, 352, 654, 791, 794
FokI GGATG 2 cut(s) 173, 479
Fsp4HI GCNGC 8 cut(s) 42, 112, 115, 333, 352, 654, 791, 794
FspBI CTAG 5 cut(s) 74, 249, 257, 336, 833
GluI GCNGC 8 cut(s) 42, 112, 115, 333, 352, 654, 791, 794
HaeIII GGCC 5 cut(s) 5, 176, 694, 796, 802
HapII CCGG 4 cut(s) 54, 346, 372, 434
Hin1I GRCGYC 1 cut(s) 752
Hin1II CATG 3 cut(s) 61, 691, 718
HinfI GANTC 1 cut(s) 299
HpaII CCGG 4 cut(s) 54, 346, 372, 434
HphI GGTGA 3 cut(s) 304, 517, 523
Hpy166II GTNNAC 1 cut(s) 478
Hpy188I TCNGA 2 cut(s) 533, 784
Hpy188III TCNNGA 7 cut(s) 74, 89, 131, 167, 257, 447, 593
Hpy8I GTNNAC 1 cut(s) 478
Hpy99I CGWCG 2 cut(s) 566, 754
HpyAV CCTTC 5 cut(s) 289, 322, 453, 664, 799
HpyCH4III ACNGT 4 cut(s) 13, 292, 401, 823
HpyCH4IV ACGT 2 cut(s) 236, 752
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 351, 381, 691, 799, 853
HpySE526I ACGT 2 cut(s) 236, 752
Hsp92I GRCGYC 1 cut(s) 752
Hsp92II CATG 3 cut(s) 61, 691, 718
Ksp22I TGATCA 3 cut(s) 163, 513, 633
Kzo9I GATC 4 cut(s) 163, 513, 633, 784
LmnI GCTCC 2 cut(s) 273, 348
Lsp1109I GCAGC 6 cut(s) 123, 126, 338, 344, 640, 777
LweI GCATC 3 cut(s) 804, 818, 834
MaeI CTAG 5 cut(s) 74, 249, 257, 336, 833
MaeII ACGT 2 cut(s) 236, 752
MaeIII GTNAC 3 cut(s) 104, 277, 392
MalI GATC 4 cut(s) 165, 515, 635, 786
MboI GATC 4 cut(s) 163, 513, 633, 784
MboII GAAGA 4 cut(s) 89, 182, 277, 688
MhlI GDGCHC 2 cut(s) 23, 456
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 92, 481, 628, 639
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 308
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 621
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 578
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 790
MspI CCGG 4 cut(s) 54, 346, 372, 434
MwoI GCNNNNNNNGC 6 cut(s) 23, 351, 381, 691, 799, 853
NdeI CATATG 1 cut(s) 407
NdeII GATC 4 cut(s) 163, 513, 633, 784
NlaIII CATG 3 cut(s) 61, 691, 718
NlaIV GGNNCC 2 cut(s) 693, 736
NmeAIII GCCGAG 3 cut(s) 202, 562, 822
NmuCI GTSAC 1 cut(s) 277
NspI RCATGY 1 cut(s) 718
OliI CACNNNNGTG 1 cut(s) 578
PcsI WCGNNNNNNNCGW 1 cut(s) 612
PdmI GAANNNNTTC 1 cut(s) 621
PkrI GCNGC 8 cut(s) 43, 113, 116, 334, 353, 655, 792, 795
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
PshAI GACNNNNGTC 1 cut(s) 84
Psp1406I AACGTT 1 cut(s) 236
PspN4I GGNNCC 2 cut(s) 693, 736
PspPI GGNCC 1 cut(s) 692
PvuII CAGCTG 1 cut(s) 790
RsaI GTAC 1 cut(s) 713
RsaNI GTAC 1 cut(s) 712
RseI CAYNNNNRTG 1 cut(s) 578
SatI GCNGC 8 cut(s) 42, 112, 115, 333, 352, 654, 791, 794
Sau3AI GATC 4 cut(s) 163, 513, 633, 784
Sau96I GGNCC 1 cut(s) 692
SchI GAGTC 1 cut(s) 308
SduI GDGCHC 2 cut(s) 23, 456
SfaNI GCATC 3 cut(s) 804, 818, 834
SmiMI CAYNNNNRTG 1 cut(s) 578
SmlI CTYRAG 1 cut(s) 490
SmoI CTYRAG 1 cut(s) 490
SpeI ACTAGT 1 cut(s) 248
Sse9I AATT 4 cut(s) 92, 481, 628, 639
SsiI CCGC 5 cut(s) 41, 318, 761, 793, 866
SspMI CTAG 5 cut(s) 74, 249, 257, 336, 833
TaaI ACNGT 4 cut(s) 13, 292, 401, 823
TaiI ACGT 2 cut(s) 239, 755
TaqI TCGA 4 cut(s) 150, 156, 615, 812
TasI AATT 4 cut(s) 92, 481, 628, 639
TatI WGTACW 1 cut(s) 711
TauI GCSGC 2 cut(s) 44, 796
TscAI CASTG 3 cut(s) 28, 406, 863
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 6 cut(s) 111, 114, 332, 351, 653, 790
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 683
TspGWI ACGGA 1 cut(s) 96
TspRI CASTG 3 cut(s) 28, 406, 863
XapI RAATTY 2 cut(s) 92, 639
XbaI TCTAGA 2 cut(s) 73, 256
XceI RCATGY 1 cut(s) 718
XmnI GAANNNNTTC 1 cut(s) 621
XspI CTAG 5 cut(s) 74, 249, 257, 336, 833
ZraI GACGTC 1 cut(s) 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.