Rorug05G0061200

DUF1087

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0005784
Physical Location & Seq
Reverse (-)
5307567 .. 5308190
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0061200.1

Sequence Viewer

Length: 624 bp
ATGAATGAAATACCTAGCAGAGCGCTAGGGTTGGGGAACGCCGCCCCGCTCGGGGCCAGCGTCGCCTGTACCTTCTCCTTTTGGGAGATTCCTTTAGGCTTCGGCCTATTCTTTCTTGGCCTTGCTAGGTTGACTGGTGGAGGTGAGGTATTGGTTTTTGATGCAGCGGCGACTTCTCGTGAATTCTCAGTCTGCTGGCAGGGATTTCTAGAGGATTTGGGGTGGTCTCAGGGCGAGAGGGTTTGTCGTGCTGGGCTGGGTCTTTCGGTGGTAGCGCTGAGGGATGATTCGGCTGCGGATCGGATTTCTGAGTCGGTGGCGGGGTGGTGTGGTCTTGGAAACTTGGTGAGGTTGCGATTGATGGGTTGGTGGCTGGGTATCCGGAGTCTTCCTCCGGATATGATCTTGGGTGGCGGAGGTCTGGGTGATTTTGATCGTGCAGGTGGCGGCGGTGCTCAGGTACAATCGGAAGTTGATTATCCGGCTTTGTTTGTTTTGTTTGTTAAGGTCGGCGGCGGACGAGGAGGTGACTCCAATGGGTGTATTGCTGTCGGTGCGCATCACTTCTGGGTGTGGAGTTGCTGGTATGGTGTACCCGGGAGTGTGAGGTTCTATTTTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006323 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007289 GO:0007399 GO:0007417 GO:0007420 GO:0008150 GO:0008152 GO:0008213 GO:0008285 GO:0009506 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0016581 GO:0016604 GO:0016607 GO:0017053 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019953 GO:0021895 GO:0021953 GO:0022008 GO:0022412 GO:0022414 GO:0023051 GO:0023056 GO:0030054 GO:0030154 GO:0030182 GO:0030900 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034728 GO:0034968 GO:0035064 GO:0035092 GO:0035093 GO:0036211 GO:0042127 GO:0042393 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043486 GO:0043543 GO:0043933 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0045165 GO:0048232 GO:0048468 GO:0048513 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048609 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051704 GO:0055044 GO:0060255 GO:0060322 GO:0060850 GO:0061628 GO:0065007 GO:0070013 GO:0070603 GO:0070734 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0098532 GO:0140030 GO:0140034 GO:1901564 GO:1901796 GO:1901798 GO:1902494 GO:1902531 GO:1902533 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05165 ko05203 map05165 map05203
Pfam Domains
Protein Families
Chromo DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

207

Amino Acids

21.88

Weight (kDa)

5.11

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 431
Acc16I TGCGCA 1 cut(s) 558
Acc36I ACCTGC 1 cut(s) 431
AccBSI CCGCTC 1 cut(s) 49
AccIII TCCGGA 2 cut(s) 381, 394
AclWI GGATC 1 cut(s) 306
AcsI RAATTY 1 cut(s) 182
AfaI GTAC 3 cut(s) 70, 462, 594
AfeI AGCGCT 2 cut(s) 24, 276
AfiI CCNNNNNNNGG 2 cut(s) 51, 52
Alw21I GWGCWC 1 cut(s) 457
Alw26I GTCTC 1 cut(s) 231
AlwI GGATC 1 cut(s) 306
Ama87I CYCGRG 2 cut(s) 50, 596
Aor13HI TCCGGA 2 cut(s) 381, 394
Aor51HI AGCGCT 2 cut(s) 24, 276
AoxI GGCC 3 cut(s) 54, 103, 118
ApeKI GCWGC 2 cut(s) 164, 293
ApoI RAATTY 1 cut(s) 182
AspLEI GCGC 3 cut(s) 25, 277, 559
AspS9I GGNCC 1 cut(s) 54
AsuC2I CCSGG 2 cut(s) 597, 598
AsuHPI GGTGA 4 cut(s) 155, 358, 437, 539
AvaI CYCGRG 2 cut(s) 50, 596
BauI CACGAG 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 380
Bbv12I GWGCWC 1 cut(s) 457
BbvCI CCTCAGC 1 cut(s) 278
BbvI GCAGC 2 cut(s) 176, 280
BccI CCATC 1 cut(s) 355
BciVI GTATCC 1 cut(s) 389
BcnI CCSGG 2 cut(s) 597, 598
BcoDI GTCTC 1 cut(s) 231
BfaI CTAG 5 cut(s) 15, 26, 126, 209, 622
BfoI RGCGCY 2 cut(s) 26, 278
BfuAI ACCTGC 1 cut(s) 431
BfuI GTATCC 1 cut(s) 389
BisI GCNGC 6 cut(s) 42, 165, 168, 294, 448, 514
BlsI GCNGC 6 cut(s) 43, 166, 169, 295, 449, 515
Bme1390I CCNGG 2 cut(s) 597, 598
BmeT110I CYCGRG 2 cut(s) 50, 596
BmgT120I GGNCC 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 2 cut(s) 597, 598
BmsI GCATC 2 cut(s) 151, 568
BpiI GAAGAC 1 cut(s) 380
BplI GAGNNNNNCTC 2 cut(s) 376, 408
Bpu10I CCTNAGC 2 cut(s) 278, 456
BpuMI CCSGG 2 cut(s) 597, 598
BsaBI GATNNNNATC 1 cut(s) 432
BsaI GGTCTC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 596
BsaWI WCCGGW 2 cut(s) 381, 394
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 52
Bse1I ACTGG 1 cut(s) 139
Bse8I GATNNNNATC 1 cut(s) 432
BseAI TCCGGA 2 cut(s) 381, 394
BseDI CCNNGG 1 cut(s) 596
BseGI GGATG 1 cut(s) 289
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 2 cut(s) 51, 52
BseMII CTCAG 5 cut(s) 201, 242, 269, 300, 470
BseNI ACTGG 1 cut(s) 139
BseRI GAGGAG 1 cut(s) 537
BseXI GCAGC 2 cut(s) 176, 280
BseYI CCCAGC 3 cut(s) 251, 256, 373
BsgI GTGCAG 1 cut(s) 459
BshFI GGCC 3 cut(s) 56, 105, 120
BsiHKAI GWGCWC 1 cut(s) 457
BsiHKCI CYCGRG 2 cut(s) 50, 596
BsiSI CCGG 4 cut(s) 382, 395, 482, 597
BslI CCNNNNNNNGG 2 cut(s) 51, 52
BsmAI GTCTC 1 cut(s) 231
BsnI GGCC 3 cut(s) 56, 105, 120
Bso31I GGTCTC 1 cut(s) 231
BsoBI CYCGRG 2 cut(s) 50, 596
Bsp1286I GDGCHC 1 cut(s) 457
Bsp13I TCCGGA 2 cut(s) 381, 394
Bsp143I GATC 3 cut(s) 298, 402, 433
BspANI GGCC 3 cut(s) 56, 105, 120
BspCNI CTCAG 5 cut(s) 200, 241, 270, 301, 469
BspEI TCCGGA 2 cut(s) 381, 394
BspLI GGNNCC 1 cut(s) 55
BspMI ACCTGC 1 cut(s) 431
BspPI GGATC 1 cut(s) 306
BspTNI GGTCTC 1 cut(s) 231
BsrBI CCGCTC 1 cut(s) 49
BsrI ACTGG 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 596
BssMI GATC 3 cut(s) 298, 402, 433
BssSI CACGAG 1 cut(s) 177
Bst2BI CACGAG 1 cut(s) 177
BstC8I GCNNGC 2 cut(s) 58, 197
BstDEI CTNAG 5 cut(s) 187, 228, 278, 309, 456
BstF5I GGATG 1 cut(s) 289
BstH2I RGCGCY 2 cut(s) 26, 278
BstHHI GCGC 3 cut(s) 25, 277, 559
BstKTI GATC 3 cut(s) 301, 405, 436
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 3 cut(s) 298, 402, 433
BstMWI GCNNNNNNNGC 2 cut(s) 62, 554
BstSCI CCNGG 2 cut(s) 595, 596
BstV1I GCAGC 2 cut(s) 176, 280
BstV2I GAAGAC 1 cut(s) 380
BsuI GTATCC 1 cut(s) 389
BsuRI GGCC 3 cut(s) 56, 105, 120
BtsCI GGATG 1 cut(s) 289
BveI ACCTGC 1 cut(s) 431
Cac8I GCNNGC 2 cut(s) 58, 197
CfoI GCGC 3 cut(s) 25, 277, 559
Cfr13I GGNCC 1 cut(s) 54
Cfr9I CCCGGG 1 cut(s) 596
CseI GACGC 1 cut(s) 49
Csp6I GTAC 3 cut(s) 69, 461, 593
CviJI RGCY 8 cut(s) 56, 99, 105, 120, 256, 293, 373, 485
CviKI_1 RGCY 8 cut(s) 56, 99, 105, 120, 256, 293, 373, 485
CviQI GTAC 3 cut(s) 69, 461, 593
DdeI CTNAG 5 cut(s) 187, 228, 278, 309, 456
DpnI GATC 3 cut(s) 300, 404, 435
DpnII GATC 3 cut(s) 298, 402, 433
EciI GGCGGA 2 cut(s) 429, 531
Eco31I GGTCTC 1 cut(s) 231
Eco47III AGCGCT 2 cut(s) 24, 276
Eco88I CYCGRG 2 cut(s) 50, 596
EcoRI GAATTC 1 cut(s) 182
FaiI YATR 2 cut(s) 401, 588
FauI CCCGC 2 cut(s) 54, 313
Fnu4HI GCNGC 6 cut(s) 42, 165, 168, 294, 448, 514
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 6 cut(s) 42, 165, 168, 294, 448, 514
FspAI RTGCGCAY 1 cut(s) 558
FspBI CTAG 5 cut(s) 15, 26, 126, 209, 622
FspI TGCGCA 1 cut(s) 558
GlaI GCGC 3 cut(s) 24, 276, 558
GluI GCNGC 6 cut(s) 42, 165, 168, 294, 448, 514
GsaI CCCAGC 3 cut(s) 255, 260, 377
HaeII RGCGCY 2 cut(s) 26, 278
HaeIII GGCC 3 cut(s) 56, 105, 120
HapII CCGG 4 cut(s) 382, 395, 482, 597
HgaI GACGC 1 cut(s) 49
HhaI GCGC 3 cut(s) 25, 277, 559
Hin6I GCGC 3 cut(s) 23, 275, 557
HinP1I GCGC 3 cut(s) 23, 275, 557
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HinfI GANTC 5 cut(s) 88, 287, 311, 385, 530
HpaII CCGG 4 cut(s) 382, 395, 482, 597
HphI GGTGA 4 cut(s) 155, 358, 437, 539
Hpy166II GTNNAC 2 cut(s) 132, 593
Hpy188I TCNGA 3 cut(s) 303, 310, 469
Hpy188III TCNNGA 4 cut(s) 179, 209, 382, 395
Hpy8I GTNNAC 2 cut(s) 132, 593
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 82
HpyCH4V TGCA 2 cut(s) 164, 440
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 554
HpyF3I CTNAG 5 cut(s) 187, 228, 278, 309, 456
HspAI GCGC 3 cut(s) 23, 275, 557
Kpn2I TCCGGA 2 cut(s) 381, 394
Kzo9I GATC 3 cut(s) 298, 402, 433
Lsp1109I GCAGC 2 cut(s) 176, 280
LweI GCATC 2 cut(s) 151, 568
MaeI CTAG 5 cut(s) 15, 26, 126, 209, 622
MaeIII GTNAC 1 cut(s) 527
MalI GATC 3 cut(s) 300, 404, 435
MbiI CCGCTC 1 cut(s) 49
MboI GATC 3 cut(s) 298, 402, 433
MboII GAAGA 1 cut(s) 380
MhlI GDGCHC 1 cut(s) 457
MluCI AATT 1 cut(s) 182
MlyI GAGTC 3 cut(s) 320, 394, 524
MroI TCCGGA 2 cut(s) 381, 394
MseI TTAA 1 cut(s) 504
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 4 cut(s) 382, 395, 482, 597
MspR9I CCNGG 2 cut(s) 597, 598
MwoI GCNNNNNNNGC 2 cut(s) 62, 554
NciI CCSGG 2 cut(s) 597, 598
NdeII GATC 3 cut(s) 298, 402, 433
NlaIV GGNNCC 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 527
NsbI TGCGCA 1 cut(s) 558
PaqCI CACCTGC 1 cut(s) 431
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PfeI GAWTC 2 cut(s) 88, 287
PkrI GCNGC 6 cut(s) 43, 166, 169, 295, 449, 515
PleI GAGTC 3 cut(s) 319, 393, 524
PpsI GAGTC 3 cut(s) 319, 393, 524
PspFI CCCAGC 3 cut(s) 251, 256, 373
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 1 cut(s) 54
RsaI GTAC 3 cut(s) 70, 462, 594
RsaNI GTAC 3 cut(s) 69, 461, 593
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 6 cut(s) 42, 165, 168, 294, 448, 514
Sau3AI GATC 3 cut(s) 298, 402, 433
Sau96I GGNCC 1 cut(s) 54
SchI GAGTC 3 cut(s) 320, 394, 524
ScrFI CCNGG 2 cut(s) 597, 598
SduI GDGCHC 1 cut(s) 457
SfaNI GCATC 2 cut(s) 151, 568
SmaI CCCGGG 1 cut(s) 598
Sse9I AATT 1 cut(s) 182
SspMI CTAG 5 cut(s) 15, 26, 126, 209, 622
StyD4I CCNGG 2 cut(s) 595, 596
TasI AATT 1 cut(s) 182
TauI GCSGC 4 cut(s) 44, 170, 450, 516
TfiI GAWTC 2 cut(s) 88, 287
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TseFI GTSAC 1 cut(s) 527
TseI GCWGC 2 cut(s) 164, 293
Tsp45I GTSAC 1 cut(s) 527
TspDTI ATGAA 2 cut(s) 17, 21
TspMI CCCGGG 1 cut(s) 596
XapI RAATTY 1 cut(s) 182
XbaI TCTAGA 1 cut(s) 208
XmaI CCCGGG 1 cut(s) 596
XspI CTAG 5 cut(s) 15, 26, 126, 209, 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.