FvH4_3g12610

DUF1087

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0005784
Physical Location & Seq
Forward (+)
7505753 .. 7518816
13064 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12610.t3

Sequence Viewer

Length: 7344 bp
ATGAAGGATAACAGCTCGTCAACAAGTACAATGCTTAACAGAAATTGGGTCTTGAAACGTAAGCGTAGAAAGCTTCCTTATGGACCTGCTGTTTCTAATGGCAAGGAAGACAGTTCAGCACCATCAGAATCTCAAGGGAAGACATCTTCTTCTGCTAAACGACAGCTGACTAATGAAATTATTTCTGATCGACTTTCGTCCAAGAAGAAAGGAAATGATGGGTATTACTATGAATGCGTGGTCTGTGACCTCGGTGGTAACTTATTATGCTGTGATAGTTGTCCTCAAACCTATCATCTCCAGTGTCTTAATCCCCCTCTTAAGAGAATTCCAAATGGGAAGTGGCAGTGCCCAAATTGCTGTAAGAAAAGTGATAGGCCAGAGCCTTTAAATTATCTAGCTGATACCATTTCAAAACGAGCAAGGACAAAGACTGCCACTTCTAAAGCCAAAACTGAAATTAAGTCACCTGAAAAAGAGAAAGTTTCGCAGATTTTTGGGGACACCATTGTTGCGAAGAAAAGGTCATCAAGCAAAGGGAAAGCTCGTAGAGTTAAATCCTTCGAAAAGAAACCATTTTCCCAGATAGATTTACCTACTAGCACGAAGGCTGGTCATTCATCAGCTGGCGGTTCTGTGGAGGGTATTTCATTGTCTGTGAATGTTGGGAATGAAATTAGATCTAACCTTTCCCCACCAGATGATTCCACAGACAAAATGTTGAGCTCTCCAGCTAAAGAAGTTTCATCTCATTCTAAAATATCAGAGACATATGAAGAAGCTCCAGAGGCATCTATGGCAAATGAAGAAGCTCCGGAGGCAGCTGTGATAACTGGGGAAGCTCCTGAGGCATCTGTGGCAAATGGAGAAGCTCCGGAGGCAGCTGTGGCAGCTGGAGAAGCTCCTGAGGCATCGATGGGAAATGGAGAAGCTCCTGAGGCATCGATGGGAAATGGAGAAGCTCCTGAGTCATCTGTTCCTCCTGAAGTGAAGCCTGACCTGTCTTGTGATGATGCATCTCCGCGTAAGACCATTGTTCTTGCCATCACTGCTGCTGCTGGCAAGGCTAGAAAAAGAAAACACAAAGGCAATAATGAGAAGAGTAAAAAGAAGCGCAGGACAGAGAAATTGAAACCTGTTATTGATATTTCTAAACATTCTGGATCTAAAGCAGATACCTCAACCCCAGGGACTCATATTCGTAAAGCACTTCGCAAGCATAAGTCTCTCAACCATGGGGTTTCTGCATCTTTATCAAGGGAGGATGTTGCAACCAAGAGTTCAGATGTCCAGATGAAACACGAGGATCTTACTGAGGAAGCAAAAGACCAGTCTCATAATGCAGATAAAGCTGGAAATTACGGAGTTGAAACAGTAATGCAGAAGGATAGTCTTACTACTGAACTTCTGCAGGTTGATCGGGTTTTGGGATGTCGAGTTCAAGGTAATCATGCTGACGCTTCTTGTCACTTATCTGTGACAGCTGTCCAGGACCTGATTTCTGATGATTTGCAAGTCTCAGAAAATCTTAACAGACTATCAGAGGAGAATTTTGCTTGTGAAACTGGCATGGATGGTGGGGCTGCTGAAAATCTCACTGAGGGTTGTCAAGAAGTTGTTAAGGGTGTTGATGGGGTTGACAACAAGAAAGACGATATAAGAATGGACAAACTACATGTGTATAGAAGGTCTATGAACAAAGAAGGCAGAAGAGCTAATTCCATGGATTTGTCGAGGAAAGATACCAAGGAGTTGGATCCTGCTGGCATAACTGATCACAGTCCAAACGAATCGGCTTTAAATGCTGATGATCCTGGAAAAACAAATGTAGTGACTGTAGGGAATATTGATGATAATTTGGACAGTCGTGATAAAGATAAAGAAGAGGCTTGGGAAATTTGTGAAGCACATGTGTCTGCCGATACCAATGATAAGGCAGATGTCAATGCAGAAACTGGAACTGATATCTGTGCTGAAAACAAAAGTGAAGAACCCACACCGGCTGAACGTGCAGCTGATGGTGTTGGGAAGGTGTCGTATGAATTTTTAGTTAAGTGGGTTGGTAAGTCTCATATTCATAATAGCTGGGTTTCTGAGTCTGAGTTAAAAGTCTTGGCAAAGAGGAAACTAGAAAACTACAAGGCAAAGTATGGAACAGCTGTTATAAATATATGCGAGGAAAGATGGAAGCAACCACAGCGGGTGATCGCGTTGCGTGGATTTAAAGATGGTTCAGGTGAAGCTTTTGTGAAATGGACTGGTCTGCCTTATGTTGATTGCACTTGGGAAAGATTGGATGAGCCAGTTATGAAAAATTCTCAGAATCTGGTTAATTTATTTAGTCAGTTTGAGCACCAAACGCTGGAAAATGATGCTCTTAAAGATGATTCAGCAAGAGGGAGGGTTAGCAGACAGCAAACTGAAATACATGCTCTGACAGAGCAGCCCAAGGAACTGAAGGGAGGTTCATTGTTTCCCCATCAGCTTGAAGCACTCAATTGGTTGCGGAAGTGCTGGCATAAATCAAGAAATGTGATCCTAGCTGATGAGATGGGGCTTGGTAAAACCATATCAGCTTGTGCATTTATTTCATCATTATATTTTGAGTTCAAAGCCACTCTACCTTGTTTAGTCTTGGTTCCACTTTCCACAATGCCTAATTGGCTTGCTGAGTTTTCATTATGGGCTCCTGAATTGAATGTCGTGGAGTACCATGGGTGTGCTAAAGCAAGAGCCATGATTCGCCAGTATGAATGGCATGCTAGTGTTCCAAACGAGTTGAACAAGAAGACATCCGCTTATAAATTTAATGTTCTTCTAACTACATATGAAATGGTTCTTGCTGATTCCACACATCTTCGTGGGGTCCCTTGGGAAGTTCTCATAGTTGATGAGGGCCATCGATTGAAAAATTCAGGAAGTAGACTTTTCAGCTTGCTTAATTCGTTCTCTTTCCAACATCGTGTACTGTTGACTGGTACCCCTCTTCAGAATAACCTTGGGGAGATGTACAACTTGCTTAATTTCTTGCAGCCAGCATCATTTCCTTCCCTGTCTACATTTGAGGAGAGGTTTAATGATCTTACAACTTCAGAAAAAGTGGAGGAATTGAAAAAACTCGTTGCTCCACATATGCTTCGTAGGCTTAAAAAGGATGCTATGCAGAATATTCCTCCAAAGACCGAACGAATGGTTCCTGTTGAGTTGTCCTCCATCCAGGCTGAATACTATCGTGCAATGTTAACAAAGAATTATCAAATATTGCGGAATATTGGGAAAGGGGTTGCACAGCAATCAATGCTGAACATTGTAATGCAGTTAAGGAAAGTCTGCAATCATCCATATCTGATACCCGGCACGGAGCCTGACTGTGGGTCTGTGGAGTTCCTTCATGACATGCGGATAAAAGCTTCAGCCAAGCTGACACTGTTGCATTCTATGCTTAAGATTTTGCACAAAGAGGGTCACAGAGTCCTTATCTTTTCCCAGATGACCAAGCTCCTTGATATCCTTGAGGATTATTTGGCAATTGAATTTGGACCTAAAACATATGAGAGAGTAGATGGATCTGTTGCAGTGGCTGATCGTCAATCTGCAATTGCGCGTTTTAACCAAGACAGAAGTAGATTTGTCTTTTTGTTATCAACACGCTCTTGTGGCCTTGGGATCAATTTGGCAACAGCTGACACTGTCATTATTTATGATTCTGATTTCAACCCCCATGCTGATATTCAAGCTATGAATCGAGCACATCGAATTGGACAGTCAAATAGACTTCTGGTTTATAGGCTTGTAGTTCGTGCTAGCGTTGAAGAGCGCATCTTGCAGCTTGCAAAAAAGAAACTTATGCTTGATCAGCTATTTGTGAACAAGTCAGAATCCCAAAAAGAAGTGGAAGATATTCTTAAGTGGGGAACGGAGGAACTTTTCAATGATTCTCCTGGCATGGATGGAAAAGATACAGGTGAAAATAATAGTAACAAAGATGAGGCAGTGCCAGATGTAGAGCATAAGCATAAGAAGAGGATTGGTAGCCTGGGGGATGTGTATGAAGACAAGTGTACGGAAAACAGCAACAAGATTGTTTGGGATGAAACTGCTATTTTAAAGTTGCTTGACCGTGAAAATCTTCAATCTGGACTGACTGATAATGCGGACGTAGATATGGAAAATGATATGCTTGGCTCTGTAAAGTCTATTGAATGGAATGAGGAGCCAATTGAAGAGCAGGGAGTTGAATCACCTCCTGGTGCAAGTGATGATATATGTGCACAAAATACTGAAAGGAAAGAGGATAATGTGGTTAATGCTACTGAAGAAAATGAATGGGATAGACTCTTACGTCTTAGATGGGAGAAATATCAAAGTGAGGAGGAAGCAGCTCTTGGTCGTGGTAAGCGAATGCGCAAAGCTGTATCGTACAGGGAAGCATATGCTGCACATCCAAGTGAAACATTGACTGAGAGTGGTGGTGGTGAAGATGAGCGTGAGCCCGAACCAGAGCCAGAGCGGGAGTACACAGCTGCAGGACGAGCTCTAAAAGCAAAGTTTGCTAAGCTCCGTGCTAGGCAAAAAGAACGTTTAGCTCAGAAGAATGAAATTGAAGAACCTCGCCCTAGTGAGGGACTGCCTATTGAGTCACATCCTCAGGGTCCCATGAACACCGCCGAAGATGTTGATCAAGCGACCGGGGATCAAGCGGCTGGACTAGTTCAATTTCTCAGTGAGAGATCTTCAGTAATTGACTTGGAGGACAACAAATTAGATGCTTCTAAAGCCAAGACTGACTCTCCCTTAAGATTGGGCAAGCTATCAAAGCATAAAAGCAGTCGCCTTGATCTTTCTGTTAATCCACTTGACCACGTGTCTCCTGACATTTTATTTCCTCGACACCAAGTTCAGGGAACAATGACTCTTTCAGTGCCCCCAAATAATTTGTTACCTGTTCTGGGACTTTGTGCCCCCAATGCTAGTCAACTAGAATCATCAAAAAAGAACTCGAGATCAAATGGCAGACGGAGAGGAGCTGGACCAGAATTTCCATTTAGTCTAGCTCCTCATTCTGGGACAATGCCTGAAACAGAAGTAAATGGTGATGAAGTAAAGCTTTCAGATGCATCTGCAGAAGCATCACAACGCCTGAAGAGTAGCATCCCAAATAGTAGTTTGCCATTTAGAACGTATCCTCCGGCTTTTCAAGGAAAAGGTTATGATCGCCCTGAAAGTTCTGGTGCCACATTTTCTGAATTCCAGGAAAAGATGTCACTGCCCAACTTACCATTTGATGAGAAATTGCTGTCAAGATTCCCGCTTTCATCTAAGAGCATGCCTACTCCACATCTTGACTTCTTACCTAACTTGTCCTTGGGTAGCAGACTCGAAACTGTCAATGGCTCCTTGCAAGAGCTTCCAACAATGCCACTGTTTCCCAATTTAAAACTGCCCACACAAGATGCACCCAGATATAATCAGCTAGACAGAGAAGCGCATCCCACCTTGGGTTTGGGCCATATGCCTACTACATTTCCATCACTCCCTGATAATCACAGAAAGGTGCTAGAAAACATAATGATGAGGACTGGTTCTGGATCAAACCATATGTTTAGAAGGAAATCAAAAGCAGATAGCTGGTCGGAAGATGAACTTGACTTCCTCTGGGTTGGTGTCCGTAGGCATGGAAGGGGCAATTGGGATGCGATGCTAAGAGACCCACGGTTGAAATTCTCAAAGTTTAAAACTTCAGAAGATTTGTCAGCAAGGTGGGAGGAGGAGCAACTGAAGCTTTTAGAAGGGTCGGCTTTTCCAGTGTCAAAATCATCCAGAAAGACTCCTAAGACCTCACAGTTCCCAAGCATATCTGATGGAATGATGACCCGGGCACTGCATGGAAGTAGACTTGTTACACCACCAAAGTTTCAATCCCATTTGACAGACATGAAGTTGGGTTTTACTGATCTTACATCTGGCTTTCCGCATATGGAAGCATCAGATAGACTTGGGGTGCAAAATGAGCAATGCCCTCCTATTCCAACGTGGTTTCATGACAAATTTCGGGGAAATTTTTCCAGAGATTCTGGTGCTGGACCTTCAGATAGACCAGGGACATCTTCCAATGTTCCCATGGAGCCACCATTTGTTGTCACTTCTTTTGGAAGCAGTTGCTTGGGTTCATTAGGTTTGAATCCCCCAAGCAGCTATGATTTGCAGCAGAAGGAAAATGAACAGGGTCCTTATAACTATGGGAAGTTGCCTAGTCTTCTGGATCGATCACTGAATGTTTTGCGTGATATGAATAATAATTTTGCAAGAGGTGAACCCAGTGCAGGATTCTTTCCTGATCCCAGGAGAGGATTTCTAATGGGTGACGATCTTGCTGGAAGTAGTTCAGCAAAGGACAAGTTACCTCATTGGCTACGGCAAGCTGTAAGTGCTCCTGCCAAACCCCCACAACCTGACCTACCCCCTACAGTATCGGCAATAGCTAGGTCAGTTCGATTGTTATACAGGGAGGAAGAGCCGACTATTCCTCCCTTTGTGATTCCAGGCCCACCTCCTTCACTACCGAAGGATCCAAGACGAAGTCTAAAGAAGAAAAGGAAACAGAAGTTACATCTCTATAGGCGGATTTCCCAAGACATTGCGGGAAGCAGCCACTTAAGTGAAAATGCTTCAAGCTCCATTCCTGTGGCCCCATCATTTCCATTGCTTTCACAATCAATGCCACCACCTCCAGGCCTTTCACCAATGGAATCTGACCTCACTATGCCTCGGAGTTTAAATATGCTAAACCCATCAGCGTTGTTGCCACATTTGAATCAACAGATCAAATCAACCATGGGGCTGTCTCCTGAAGCGCTTCCTCCAGGCCTTTCGAGAATGGAATCTGACCTCAAGATGCCTCGGAGTTTAAATATGTTAAACCCGTCGGCCTCATTGCTACATCTGAATCAACAGATGAAAACAACCATGGGGCTGTCTCCTTCCCCTGAAGTGCTTCAATTGGTAGCATCATGTGTTGCTCCGGGTCCACATCTACCAGCAGTTTCTGACATGACAAGCTCAAGCGTCCCTGATGTGAAGCCATCATTGCCAGATTCAGCTGACCAAGGAGGAAACTTGGATTCACAAGCTACATTGGCAAACGATGAGGCAAGAGATGAGGCTAAGCCAGGTTCACCTGTTAAGGAGTGTGATTCACTTCCGAAAGAAAGAAAAGCTGCTACTGGAAGTGGGGATTCCAGCAAGACTCGGTCAGATCCCAATAGAACTGAGCATCCTGATGCAGAGGAAGTATCTTCTGAGGGCACCGTGTCAGATCACCCTCTGAGTGACCGGGAATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006323 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007289 GO:0007399 GO:0007417 GO:0007420 GO:0008150 GO:0008152 GO:0008213 GO:0008285 GO:0009506 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0016581 GO:0016604 GO:0016607 GO:0017053 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019953 GO:0021895 GO:0021953 GO:0022008 GO:0022412 GO:0022414 GO:0023051 GO:0023056 GO:0030054 GO:0030154 GO:0030182 GO:0030900 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034728 GO:0034968 GO:0035064 GO:0035092 GO:0035093 GO:0036211 GO:0042127 GO:0042393 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043486 GO:0043543 GO:0043933 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0045165 GO:0048232 GO:0048468 GO:0048513 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048609 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051704 GO:0055044 GO:0060255 GO:0060322 GO:0060850 GO:0061628 GO:0065007 GO:0070013 GO:0070603 GO:0070734 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0098532 GO:0140030 GO:0140034 GO:1901564 GO:1901796 GO:1901798 GO:1902494 GO:1902531 GO:1902533 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05165 ko05203 map05165 map05203
Pfam Domains
Protein Families
Chromo DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

2448

Amino Acids

270.59

Weight (kDa)

6.34

Isoelectric Point (pI)

51.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 79 - 120 2.9e-09 PHD-finger
Chromo PF00385 731 - 781 5.1e-07 Chromo (CHRromatin Organisation MOdifier) domain
ResIII PF04851 824 - 995 3.8e-10 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 827 - 1116 1.7e-79 SNF2-related domain
HDA2-3 PF11496 1064 - 1281 9.6e-12 Class II histone deacetylase complex subunits 2 and 3
Helicase_C PF00271 1140 - 1254 9.3e-23 Helicase conserved C-terminal domain
DUF1087 PF06465 1433 - 1476 9e-07 CHD subfamily II, DUF1087
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 2165, 2802, 6234
AasI GACNNNNNNGTC 1 cut(s) 4341
Acc16I TGCGCA 1 cut(s) 4406
Acc36I ACCTGC 2 cut(s) 94, 1402
Acc65I GGTACC 1 cut(s) 2978
AccB1I GGYRCC 3 cut(s) 2978, 5231, 7304
AccB7I CCANNNNNTGG 1 cut(s) 2362
AccBSI CCGCTC 1 cut(s) 4510
AccI GTMKAC 3 cut(s) 2923, 3056, 5893
AccII CGCG 3 cut(s) 1024, 2210, 3604
AccIII TCCGGA 2 cut(s) 814, 874
AclI AACGTT 1 cut(s) 4579
AcvI CACGTG 1 cut(s) 4864
AfaI GTAC 8 cut(s) 28, 2711, 2967, 2980, 3011, 4063, 4421, 4517
AfeI AGCGCT 1 cut(s) 6855
AflII CTTAAG 5 cut(s) 320, 3443, 3905, 4795, 6655
AflIII ACRYGT 3 cut(s) 1675, 1909, 4863
AhdI GACNNNNNGTC 2 cut(s) 3373, 4864
AhlI ACTAGT 1 cut(s) 4708
AjuI GAANNNNNNNTTGG 4 cut(s) 4368, 4400, 5671, 5703
AleI CACNNNNGTG 1 cut(s) 6657
AloI GAACNNNNNNTCC 8 cut(s) 1422, 1454, 5170, 5202, 5634, 5666, 7258, 7290
Alw21I GWGCWC 6 cut(s) 728, 2355, 3751, 4273, 4537, 6433
Alw26I GTCTC 9 cut(s) 761, 1230, 1338, 1522, 2073, 4872, 5700, 6849, 6981
Alw44I GTGCAC 1 cut(s) 4269
AlwNI CAGNNNCTG 5 cut(s) 1495, 1955, 2326, 3581, 7046
Ama87I CYCGRG 2 cut(s) 4999, 5874
Aor13HI TCCGGA 2 cut(s) 814, 874
Aor51HI AGCGCT 1 cut(s) 6855
AoxI GGCC 9 cut(s) 377, 2896, 3658, 5506, 6544, 6687, 6733, 6865, 6927
ApaLI GTGCAC 1 cut(s) 4269
ArsI GACNNNNNNTTYG 4 cut(s) 509, 541, 1316, 1348
Asp700I GAANNNNTTC 7 cut(s) 2835, 3900, 4128, 6061, 6382, 6855, 6993
Asp718I GGTACC 1 cut(s) 2978
AspLEI GCGC 6 cut(s) 1116, 3604, 3819, 4407, 5488, 6856
AsuC2I CCSGG 6 cut(s) 3354, 4690, 5875, 5876, 7023, 7334
AsuII TTCGAA 1 cut(s) 564
AsuNHI GCTAGC 1 cut(s) 3803
AvaI CYCGRG 2 cut(s) 4999, 5874
AvaII GGWCC 9 cut(s) 83, 1492, 2866, 3539, 4652, 5030, 6083, 6227, 7025
AxyI CCTNAGG 4 cut(s) 846, 906, 936, 4647
BaeGI GKGCMC 6 cut(s) 353, 4273, 4926, 4963, 5881, 7307
BamHI GGATCC 2 cut(s) 1756, 6568
BanI GGYRCC 3 cut(s) 2978, 5231, 7304
BanII GRGCYC 4 cut(s) 728, 2689, 4494, 4537
BauI CACGAG 1 cut(s) 1301
BbrPI CACGTG 1 cut(s) 4864
BbsI GAAGAC 5 cut(s) 114, 146, 2795, 4059, 6248
Bbv12I GWGCWC 6 cut(s) 728, 2355, 3751, 4273, 4537, 6433
BceAI ACGGC 1 cut(s) 6431
BcgI CGANNNNNNTGC 2 cut(s) 1400, 1434
BciVI GTATCC 1 cut(s) 5193
BclI TGATCA 3 cut(s) 1774, 3853, 4678
BcnI CCSGG 6 cut(s) 3354, 4690, 5875, 5876, 7023, 7334
BcoDI GTCTC 9 cut(s) 761, 1230, 1338, 1522, 2073, 4872, 5700, 6849, 6981
BcuI ACTAGT 1 cut(s) 4708
BfmI CTRYAG 6 cut(s) 1409, 1836, 4524, 5121, 6465, 6616
BfoI RGCGCY 1 cut(s) 6857
BfrI CTTAAG 5 cut(s) 320, 3443, 3905, 4795, 6655
BfuAI ACCTGC 2 cut(s) 94, 1402
BfuI GTATCC 1 cut(s) 5193
BglI GCCNNNNNGGC 1 cut(s) 2662
BglII AGATCT 2 cut(s) 680, 4730
BlpI GCTNAGC 2 cut(s) 4554, 7164
Bme18I GGWCC 9 cut(s) 83, 1492, 2866, 3539, 4652, 5030, 6083, 6227, 7025
BmeRI GACNNNNNGTC 2 cut(s) 3373, 4864
BmeT110I CYCGRG 2 cut(s) 4999, 5874
BmrI ACTGGG 2 cut(s) 843, 6312
BmtI GCTAGC 1 cut(s) 3807
BmuI ACTGGG 2 cut(s) 843, 6312
BoxI GACNNNNGTC 2 cut(s) 196, 1484
BpiI GAAGAC 5 cut(s) 114, 146, 2795, 4059, 6248
BplI GAGNNNNNCTC 2 cut(s) 3194, 3226
BpmI CTGGAG 6 cut(s) 284, 714, 768, 915, 6714, 6846
Bpu1102I GCTNAGC 2 cut(s) 4554, 7164
Bpu14I TTCGAA 1 cut(s) 564
BpuEI CTTGAG 4 cut(s) 117, 3533, 6875, 7045
BpuMI CCSGG 6 cut(s) 3354, 4690, 5875, 5876, 7023, 7334
Bsa29I ATCGAT 4 cut(s) 914, 944, 2902, 6265
BsaAI YACGTR 1 cut(s) 4864
BsaBI GATNNNNATC 1 cut(s) 4677
BsaI GGTCTC 1 cut(s) 5700
BsaWI WCCGGW 2 cut(s) 814, 874
BsaXI ACNNNNNCTCC 6 cut(s) 4774, 4804, 5170, 5200, 6511, 6541
Bse118I RCCGGY 1 cut(s) 1999
Bse21I CCTNAGG 4 cut(s) 846, 906, 936, 4647
Bse3DI GCAATG 6 cut(s) 3243, 6020, 6636, 6701, 6932, 7085
Bse8I GATNNNNATC 1 cut(s) 4677
BseAI TCCGGA 2 cut(s) 814, 874
BseCI ATCGAT 4 cut(s) 914, 944, 2902, 6265
BseJI GATNNNNATC 1 cut(s) 4677
BseMI GCAATG 6 cut(s) 3243, 6020, 6636, 6701, 6932, 7085
BseRI GAGGAG 8 cut(s) 1559, 3080, 4226, 4385, 5037, 5046, 5780, 5783
BseSI GKGCMC 6 cut(s) 353, 4273, 4926, 4963, 5881, 7307
BseYI CCCAGC 1 cut(s) 2085
BsgI GTGCAG 3 cut(s) 2031, 4422, 6342
Bsh1236I CGCG 3 cut(s) 1024, 2210, 3604
Bsh1285I CGRYCG 1 cut(s) 4689
BshFI GGCC 9 cut(s) 379, 2898, 3660, 5508, 6546, 6689, 6735, 6867, 6929
BshNI GGYRCC 3 cut(s) 2978, 5231, 7304
BshVI ATCGAT 4 cut(s) 914, 944, 2902, 6265
BsiEI CGRYCG 1 cut(s) 4689
BsiHKAI GWGCWC 6 cut(s) 728, 2355, 3751, 4273, 4537, 6433
BsiHKCI CYCGRG 2 cut(s) 4999, 5874
BsiSI CCGG 9 cut(s) 815, 875, 2000, 3354, 4689, 5189, 5875, 7022, 7333
BslFI GGGAC 9 cut(s) 515, 1204, 2852, 4638, 4638, 4965, 5080, 6115, 7052
BsmAI GTCTC 9 cut(s) 761, 1230, 1338, 1522, 2073, 4872, 5700, 6849, 6981
BsmFI GGGAC 9 cut(s) 515, 1204, 2852, 4638, 4638, 4965, 5080, 6115, 7052
BsmI GAATGC 3 cut(s) 239, 3433, 4407
BsnI GGCC 9 cut(s) 379, 2898, 3660, 5508, 6546, 6689, 6735, 6867, 6929
Bso31I GGTCTC 1 cut(s) 5700
BsoBI CYCGRG 2 cut(s) 4999, 5874
Bsp119I TTCGAA 1 cut(s) 564
Bsp13I TCCGGA 2 cut(s) 814, 874
Bsp1407I TGTACA 1 cut(s) 3009
Bsp1720I GCTNAGC 2 cut(s) 4554, 7164
Bsp19I CCATGG 6 cut(s) 1234, 1722, 2713, 6120, 6834, 6966
BspANI GGCC 9 cut(s) 379, 2898, 3660, 5508, 6546, 6689, 6735, 6867, 6929
BspDI ATCGAT 4 cut(s) 914, 944, 2902, 6265
BspEI TCCGGA 2 cut(s) 814, 874
BspFNI CGCG 3 cut(s) 1024, 2210, 3604
BspHI TCATGA 2 cut(s) 3391, 6040
BspMAI CTGCAG 3 cut(s) 1413, 4528, 5125
BspMI ACCTGC 2 cut(s) 94, 1402
BspOI GCTAGC 1 cut(s) 3807
BspQI GCTCTTC 4 cut(s) 1705, 3807, 4218, 6507
BspT104I TTCGAA 1 cut(s) 564
BspT107I GGYRCC 3 cut(s) 2978, 5231, 7304
BspTI CTTAAG 5 cut(s) 320, 3443, 3905, 4795, 6655
BspTNI GGTCTC 1 cut(s) 5700
BsrBI CCGCTC 1 cut(s) 4510
BsrDI GCAATG 6 cut(s) 3243, 6020, 6636, 6701, 6932, 7085
BsrFI RCCGGY 1 cut(s) 1999
BsrGI TGTACA 1 cut(s) 3009
BssAI RCCGGY 1 cut(s) 1999
BssSI CACGAG 1 cut(s) 1301
Bst2BI CACGAG 1 cut(s) 1301
Bst6I CTCTTC 9 cut(s) 1094, 1705, 1878, 2991, 3807, 4016, 4218, 5138, 6507
BstAFI CTTAAG 5 cut(s) 320, 3443, 3905, 4795, 6655
BstAPI GCANNNNNTGC 4 cut(s) 3298, 3439, 4436, 4550
BstAUI TGTACA 1 cut(s) 3009
BstBAI YACGTR 1 cut(s) 4864
BstBI TTCGAA 1 cut(s) 564
BstDSI CCRYGG 7 cut(s) 1234, 1722, 2713, 5711, 6120, 6834, 6966
BstFNI CGCG 3 cut(s) 1024, 2210, 3604
BstH2I RGCGCY 1 cut(s) 6857
BstHHI GCGC 6 cut(s) 1116, 3604, 3819, 4407, 5488, 6856
BstMAI GTCTC 9 cut(s) 761, 1230, 1338, 1522, 2073, 4872, 5700, 6849, 6981
BstMCI CGRYCG 1 cut(s) 4689
BstNSI RCATGY 6 cut(s) 1679, 1913, 2432, 2762, 3400, 5329
BstPAI GACNNNNGTC 2 cut(s) 196, 1484
BstSFI CTRYAG 6 cut(s) 1409, 1836, 4524, 5121, 6465, 6616
BstSLI GKGCMC 6 cut(s) 353, 4273, 4926, 4963, 5881, 7307
BstUI CGCG 3 cut(s) 1024, 2210, 3604
BstV2I GAAGAC 5 cut(s) 114, 146, 2795, 4059, 6248
BstX2I RGATCY 8 cut(s) 680, 1163, 1306, 1756, 3566, 4730, 6568, 7255
BstXI CCANNNNNNTGG 2 cut(s) 1753, 6685
BstYI RGATCY 8 cut(s) 680, 1163, 1306, 1756, 3566, 4730, 6568, 7255
Bsu15I ATCGAT 4 cut(s) 914, 944, 2902, 6265
Bsu36I CCTNAGG 4 cut(s) 846, 906, 936, 4647
BsuI GTATCC 1 cut(s) 5193
BsuRI GGCC 9 cut(s) 379, 2898, 3660, 5508, 6546, 6689, 6735, 6867, 6929
BsuTUI ATCGAT 4 cut(s) 914, 944, 2902, 6265
BtgI CCRYGG 7 cut(s) 1234, 1722, 2713, 5711, 6120, 6834, 6966
BtgZI GCGATG 1 cut(s) 5711
BtsI GCAGTG 6 cut(s) 353, 1047, 3582, 3999, 5264, 5879
BveI ACCTGC 2 cut(s) 94, 1402
CaiI CAGNNNCTG 5 cut(s) 1495, 1955, 2326, 3581, 7046
CciI TCATGA 2 cut(s) 3391, 6040
CfoI GCGC 6 cut(s) 1116, 3604, 3819, 4407, 5488, 6856
Cfr10I RCCGGY 1 cut(s) 1999
Cfr9I CCCGGG 1 cut(s) 5874
ClaI ATCGAT 4 cut(s) 914, 944, 2902, 6265
CseI GACGC 2 cut(s) 1466, 7054
Csp6I GTAC 8 cut(s) 27, 2710, 2966, 2979, 3010, 4062, 4420, 4516
CviQI GTAC 8 cut(s) 27, 2710, 2966, 2979, 3010, 4062, 4420, 4516
DraI TTTAAA 8 cut(s) 390, 1800, 2224, 4107, 5436, 5734, 6777, 6909
DrdI GACNNNNNNGTC 1 cut(s) 4341
DriI GACNNNNNGTC 2 cut(s) 3373, 4864
DseDI GACNNNNNNGTC 1 cut(s) 4341
Eam1104I CTCTTC 9 cut(s) 1094, 1705, 1878, 2991, 3807, 4016, 4218, 5138, 6507
Eam1105I GACNNNNNGTC 2 cut(s) 3373, 4864
EarI CTCTTC 9 cut(s) 1094, 1705, 1878, 2991, 3807, 4016, 4218, 5138, 6507
EciI GGCGGA 1 cut(s) 6637
Ecl136II GAGCTC 2 cut(s) 726, 4535
Eco147I AGGCCT 2 cut(s) 6735, 6867
Eco24I GRGCYC 4 cut(s) 728, 2689, 4494, 4537
Eco31I GGTCTC 1 cut(s) 5700
Eco32I GATATC 2 cut(s) 1966, 3508
Eco47I GGWCC 9 cut(s) 83, 1492, 2866, 3539, 4652, 5030, 6083, 6227, 7025
Eco47III AGCGCT 1 cut(s) 6855
Eco53kI GAGCTC 2 cut(s) 726, 4535
Eco72I CACGTG 1 cut(s) 4864
Eco81I CCTNAGG 4 cut(s) 846, 906, 936, 4647
Eco88I CYCGRG 2 cut(s) 4999, 5874
EcoICRI GAGCTC 2 cut(s) 726, 4535
EcoO109I RGGNCCY 4 cut(s) 1492, 2866, 4652, 6227
EcoRI GAATTC 2 cut(s) 327, 5246
EcoRV GATATC 2 cut(s) 1966, 3508
EcoT22I ATGCAT 2 cut(s) 1018, 5119
EcoT38I GRGCYC 4 cut(s) 728, 2689, 4494, 4537
FalI AAGNNNNNCTT 8 cut(s) 3888, 3920, 4368, 4400, 5091, 5123, 5628, 5660
FaqI GGGAC 9 cut(s) 515, 1204, 2852, 4638, 4638, 4965, 5080, 6115, 7052
FauI CCCGC 4 cut(s) 2193, 4503, 5316, 6634
FauNDI CATATG 8 cut(s) 772, 2827, 3132, 3550, 4432, 5511, 5598, 5976
FbaI TGATCA 3 cut(s) 1774, 3853, 4678
FblI GTMKAC 3 cut(s) 2923, 3056, 5893
FriOI GRGCYC 4 cut(s) 728, 2689, 4494, 4537
FspI TGCGCA 1 cut(s) 4406
GlaI GCGC 6 cut(s) 1115, 3603, 3818, 4406, 5487, 6855
GsaI CCCAGC 1 cut(s) 2089
GsuI CTGGAG 6 cut(s) 284, 714, 768, 915, 6714, 6846
HaeII RGCGCY 1 cut(s) 6857
HaeIII GGCC 9 cut(s) 379, 2898, 3660, 5508, 6546, 6689, 6735, 6867, 6929
HapII CCGG 9 cut(s) 815, 875, 2000, 3354, 4689, 5189, 5875, 7022, 7333
HgaI GACGC 2 cut(s) 1466, 7054
HhaI GCGC 6 cut(s) 1116, 3604, 3819, 4407, 5488, 6856
Hin6I GCGC 6 cut(s) 1114, 3602, 3817, 4405, 5486, 6854
HinP1I GCGC 6 cut(s) 1114, 3602, 3817, 4405, 5486, 6854
HincII GTYRAC 5 cut(s) 21, 1639, 2973, 3243, 4976
HindII GTYRAC 5 cut(s) 21, 1639, 2973, 3243, 4976
HindIII AAGCTT 5 cut(s) 71, 2241, 3408, 5105, 5780
HpaI GTTAAC 1 cut(s) 3243
HpaII CCGG 9 cut(s) 815, 875, 2000, 3354, 4689, 5189, 5875, 7022, 7333
Hpy99I CGWCG 1 cut(s) 6928
HpyCH4IV ACGT 8 cut(s) 58, 2008, 4158, 4342, 4579, 4863, 5180, 6032
HpySE526I ACGT 8 cut(s) 58, 2008, 4158, 4342, 4579, 4863, 5180, 6032
HspAI GCGC 6 cut(s) 1114, 3602, 3817, 4405, 5486, 6854
KflI GGGWCCC 2 cut(s) 2866, 4652
Kpn2I TCCGGA 2 cut(s) 814, 874
KpnI GGTACC 1 cut(s) 2982
Ksp22I TGATCA 3 cut(s) 1774, 3853, 4678
KspAI GTTAAC 1 cut(s) 3243
LguI GCTCTTC 4 cut(s) 1705, 3807, 4218, 6507
MaeII ACGT 8 cut(s) 58, 2008, 4158, 4342, 4579, 4863, 5180, 6032
MbiI CCGCTC 1 cut(s) 4510
MfeI CAATTG 6 cut(s) 2497, 3528, 3597, 4218, 5686, 6998
MflI RGATCY 8 cut(s) 680, 1163, 1306, 1756, 3566, 4730, 6568, 7255
MmeI TCCRAC 5 cut(s) 1734, 2980, 5435, 5613, 6053
Mph1103I ATGCAT 2 cut(s) 1018, 5119
MroI TCCGGA 2 cut(s) 814, 874
MroXI GAANNNNTTC 7 cut(s) 2835, 3900, 4128, 6061, 6382, 6855, 6993
MslI CAYNNNNRTG 9 cut(s) 2718, 2763, 2859, 3311, 4446, 5570, 6657, 6683, 7278
MspCI CTTAAG 5 cut(s) 320, 3443, 3905, 4795, 6655
MspI CCGG 9 cut(s) 815, 875, 2000, 3354, 4689, 5189, 5875, 7022, 7333
MunI CAATTG 6 cut(s) 2497, 3528, 3597, 4218, 5686, 6998
Mva1269I GAATGC 3 cut(s) 239, 3433, 4407
MvnI CGCG 3 cut(s) 1024, 2210, 3604
NciI CCSGG 6 cut(s) 3354, 4690, 5875, 5876, 7023, 7334
NcoI CCATGG 6 cut(s) 1234, 1722, 2713, 6120, 6834, 6966
NdeI CATATG 8 cut(s) 772, 2827, 3132, 3550, 4432, 5511, 5598, 5976
NheI GCTAGC 1 cut(s) 3803
NsbI TGCGCA 1 cut(s) 4406
NsiI ATGCAT 2 cut(s) 1018, 5119
NspI RCATGY 6 cut(s) 1679, 1913, 2432, 2762, 3400, 5329
NspV TTCGAA 1 cut(s) 564
OliI CACNNNNGTG 1 cut(s) 6657
PaeI GCATGC 2 cut(s) 2762, 5329
PaeR7I CTCGAG 1 cut(s) 4999
PagI TCATGA 2 cut(s) 3391, 6040
PasI CCCWGGG 1 cut(s) 1187
PceI AGGCCT 2 cut(s) 6735, 6867
PciI ACATGT 2 cut(s) 1675, 1909
PciSI GCTCTTC 4 cut(s) 1705, 3807, 4218, 6507
PcsI WCGNNNNNNNCGW 2 cut(s) 3751, 4396
PctI GAATGC 3 cut(s) 239, 3433, 4407
PdmI GAANNNNTTC 7 cut(s) 2835, 3900, 4128, 6061, 6382, 6855, 6993
PflFI GACNNNGTC 3 cut(s) 3689, 6579, 7249
PflMI CCANNNNNTGG 1 cut(s) 2362
PfoI TCCNGGA 3 cut(s) 1488, 1813, 5250
PmaCI CACGTG 1 cut(s) 4864
PmlI CACGTG 1 cut(s) 4864
Ppu21I YACGTR 1 cut(s) 4864
PpuMI RGGWCCY 4 cut(s) 1492, 2866, 4652, 6227
PscI ACATGT 2 cut(s) 1675, 1909
PshAI GACNNNNGTC 2 cut(s) 196, 1484
PsiI TTATAA 3 cut(s) 2165, 2802, 6234
Psp124BI GAGCTC 2 cut(s) 728, 4537
Psp1406I AACGTT 1 cut(s) 4579
Psp5II RGGWCCY 4 cut(s) 1492, 2866, 4652, 6227
PspCI CACGTG 1 cut(s) 4864
PspFI CCCAGC 1 cut(s) 2085
PspPPI RGGWCCY 4 cut(s) 1492, 2866, 4652, 6227
PstI CTGCAG 3 cut(s) 1413, 4528, 5125
PstNI CAGNNNCTG 5 cut(s) 1495, 1955, 2326, 3581, 7046
PsuI RGATCY 8 cut(s) 680, 1163, 1306, 1756, 3566, 4730, 6568, 7255
PsyI GACNNNGTC 3 cut(s) 3689, 6579, 7249
RsaI GTAC 8 cut(s) 28, 2711, 2967, 2980, 3011, 4063, 4421, 4517
RsaNI GTAC 8 cut(s) 27, 2710, 2966, 2979, 3010, 4062, 4420, 4516
RseI CAYNNNNRTG 9 cut(s) 2718, 2763, 2859, 3311, 4446, 5570, 6657, 6683, 7278
SacI GAGCTC 2 cut(s) 728, 4537
SapI GCTCTTC 4 cut(s) 1705, 3807, 4218, 6507
SfcI CTRYAG 6 cut(s) 1409, 1836, 4524, 5121, 6465, 6616
Sfr274I CTCGAG 1 cut(s) 4999
SfuI TTCGAA 1 cut(s) 564
SinI GGWCC 9 cut(s) 83, 1492, 2866, 3539, 4652, 5030, 6083, 6227, 7025
SlaI CTCGAG 1 cut(s) 4999
SmaI CCCGGG 1 cut(s) 5876
SmiMI CAYNNNNRTG 9 cut(s) 2718, 2763, 2859, 3311, 4446, 5570, 6657, 6683, 7278
SpeI ACTAGT 1 cut(s) 4708
SphI GCATGC 2 cut(s) 2762, 5329
SseBI AGGCCT 2 cut(s) 6735, 6867
SspI AATATT 4 cut(s) 1846, 3169, 3261, 3271
SstI GAGCTC 2 cut(s) 728, 4537
StuI AGGCCT 2 cut(s) 6735, 6867
TaiI ACGT 8 cut(s) 61, 2011, 4161, 4345, 4582, 4866, 5183, 6035
TaqII GACCGA 2 cut(s) 3197, 7239
TatI WGTACW 4 cut(s) 26, 2965, 3009, 4515
TauI GCSGC 1 cut(s) 4703
TspGWI ACGGA 7 cut(s) 1377, 3374, 3932, 4079, 4550, 5032, 5657
TspMI CCCGGG 1 cut(s) 5874
Tth111I GACNNNGTC 3 cut(s) 3689, 6579, 7249
Van91I CCANNNNNTGG 1 cut(s) 2362
Vha464I CTTAAG 5 cut(s) 320, 3443, 3905, 4795, 6655
VneI GTGCAC 1 cut(s) 4269
VpaK11BI GGWCC 9 cut(s) 83, 1492, 2866, 3539, 4652, 5030, 6083, 6227, 7025
XceI RCATGY 6 cut(s) 1679, 1913, 2432, 2762, 3400, 5329
XcmI CCANNNNNNNNNTGG 3 cut(s) 339, 5500, 6118
XhoI CTCGAG 1 cut(s) 4999
XmaI CCCGGG 1 cut(s) 5874
XmiI GTMKAC 3 cut(s) 2923, 3056, 5893
XmnI GAANNNNTTC 7 cut(s) 2835, 3900, 4128, 6061, 6382, 6855, 6993
Zsp2I ATGCAT 2 cut(s) 1018, 5119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.