RLG00000032539

DUF1087

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005784
Physical Location & Seq
Forward (+)
16265402 .. 16277598
12197 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032539

Sequence Viewer

Length: 7269 bp
ATGAAGGATAACAACTCGTCAACAAGTACAATGATTAACAGAAACTGGGTCTTGAAACGAAAACGTAGAAAGCTTCCTTATGGACCTGCTCTATCTAATGGCAAAGAAGACAGTTCGGCAGCATCAGAATCTCAAGGGAAGACATCTTCTTCCGCTAAACGACGGCTGACTAATGAAATTATTTCTGATCGACTTTCGTCCAAGAAGAAAGGAAACGATGGGTATTACTATGAATGTGTGGTCTGTGACCTCGGTGGTAACTTGTTGTGTTGTGATAGTTGTCCCCAAACCTATCATCTCCAGTGTCTTAATCCACCTCTTAAGCGGATTCCGAATGGGAAGTGGCAGTGCCCAAACTGCTGTCAGAAAAGTGATATGCCAGAGCCTTTAAATTATCTAGCTGATAACATTTCAAAACGAGCAAGGACAAAGATTGCCACCTCTAAGTCCAAAGCTGAAGTTAAGTCATCTGACAGAGAGAAAGTATCGCAGATTTTTGGGAACACCATTGTTGCAAAGAAAAGATCATCAAGCAAAGGGAAAGCTCATGGAGTTAAATCCTTCGAAAAGAAACCATTCTCCCAGATAGATATATCTTCTAGCACGAAGCCCAGTCATTCATCAGCTGGCTGTTCTGTGGAGGGTATTTCATTGTCTGAGAATGTTGGGGATGAAAATAGATCTAATCTTTCCCCACCAGATGATTCCGCAGACAAAAAGTTGAGCTCTCCAGCTAAAGAGGTTTCATCTCATTCTAAAATATCAGAGACAAATGAAGAAGCTCCTGACGCATCTATGACAAATGAAGAAGCTCCGGAGGCAGCTGTGACAACTGGAGAAGCTCCGGAGGCAGCTGTGGCAACTGGAGAAGCTCCGGAGGCAGCTGTGGCAACTGGAGAAGCTCCGGAGGCAGCTGTGACAACTGGAGAAGCTCCGGAGGCAGCTGTGACAACTGGAGAAGCTCCTGAGGCATCTGTGCCAAATGGAGAAGCTCCCGAGGCATCTGTGCCAAATGGAGAAGCTCCTGAGCCATCTGTCCTTCCTGAAGGGAAGCCTGACCCGTCTTGTGATGATGCATCTCCGCGTAAGACCATTGTTCTTGCCATCAGTGCTGCTGCTGGCAAGGCTAGAAAGAGAAAACACAAAGGCAATAATGAGAAGAGTAAAAAGAAGCGCAGGACAGAGAAGAGGAAAACTGTCATTGGTATTTCTAAACAGTCTGGATCTAAAGCAAATACCTCAAGCCCAGGGACTCGTATTCGTAAAACACTTCGTAAGCATAAATCTCTCAACCATGGGGTTTCTGCATCTTTGTCAAGGGAGGATGTCACAACCCAGGGTTCAGATGTCCAGATGAAAGATGAGGACCTTACTGAGGAAGTGAAAGACCAATTTCATAATGCAGATAAAGCCGGAAATCATGGAGTCGAAACATTAATGCAGAAGGATAGTCTTACTGCTGAACTCCTGCAGGTGGATCGGGTTTTGGGATGTCGAGTTCAAGGTAATCACGCTGCTGCTTCTTGTCACTTATCAGTGACAGCTGCCCAGGATCTGAGTTCTGATGATGCACAAGTCTCAGAAAATAATAACAGACTATCACAGGAAAATTTTGCTTGCGAAACTGTTATGGATGTTGGGGCGGCTGAAACTCTGACTGAGGGTTGTCAAGGAGTTGTTAAGGGTGTTGATGGGGATGACAGCAAGAAGCAGGATATAAGAGTGGACAAACTGCATGTGTACAGAAGGTCTATGAACAAAGAAGGTAAAAGAGCTAATTCCATGGATTTGTCTAGGAAAGATACAAAGGAGTTGGATCCTGCAGGCATAATTGATCACGATCCAAACGAATCTGCTTTAAATGCTGATGATCCAGAAAAAACAAATGAAGAAGTAGTGACTGCAGAGAATATTGATGTCAATTTGAACAGTCATGATAAAGATAAAGAAGAGGTTGTGGAAATTTGTGAAGCGCATGTTTCTGCTGATACCAATGACAAGAGAGATGTCAATACAGAAGCTGAAACTGATATCTGTGCTGAAAACAAAAGTGAAGAGCCCACACTGGCTGAACGTGCAGGTGATGGTGTTGAAACGGTATCGTATGAATTTTTAGTTAAGTGGGTAGGTAAGTCTCATATTCATAATAGCTGGGTTTCTGAATCTGAGTTAAAAGTCCTGGCGAAGAGGAAACTAGAAAACTATAAGGCAAAGTATGGAATGGCTGTTATAAATATATGCGAGGAGAGATGGAAGCAACCACAGCGGGTGATCGCTCTCCGTGGATTTAAAGATGGTTCAGGTGAAGCTTTTGTGAAATGGACTGGTTTGCCTTATGATGAATGCACTTGGGAAAGATTGGATGAGCCTGTTATGAGAAATTCTCAGAATCTGGTTGAATTATTTAGTCAGTTTGAGCACCAAACGTTGGTAAATGATGCTCTTAAAGATGATTCATCAAGAGGGAAGGTTAGCCGACAGCAAAATGAAATACTTGCTCTGACAGAGCAGCCCAAGGAGCTAAAGGGAGGTTCATTGTTTCCCCATCAGCTTGAAGCACTCAATTGGTTGCGGAAGTGCTGGCATAAATCAAGAAATGTGATACTAGCTGATGAGATGGGGCTCGGTAAAACCATATCAGCTTGTGCTTTTATTTCGTCATTATATTTTGAGTTCAAAGCCACTCTACCTTGTTTAGTCTTGGTTCCACTTTCCACAATGCCTAATTGGCTTGCTGAGTTTTCATTATGGGCCCCTGAATTGAATGTCGTGGAATACCATGGGTGTGCCAAAGCAAGAGCCATGATTCGCCAGTATGAATGGCATGCTAGTGTTCCAAATGAGTTGAACAAGAAGACATCCGCTTATAAATTTAATGTTCTTTTAACTACATATGAAATGGTTCTTGCTGATTCCACACATCTTCGTGGGGTCCCTTGGGAAGTTCTTATAGTTGATGAGGGCCATCGATTGAAAAATTCAGGAAGTAGACTTTTCAGCTTGCTTAACTCGTTCTCTTTCCAACATCGTGTACTGTTGACTGGCACCCCTCTTCAGAATAACCTTGGTGAGATGTACAACTTGCTTAATTTCTTGCAGCCTGCATCATTCCCTTCCCTGTCTTCATTTGAGGAGAGGTTTAATGATCTTACAACTTCAGAAAAAGTGGAGGAATTGAAAAAACTCGTTGCTCCACATATGCTTCGTAGGCTTAAAAAGGATGCTATGCAGAATATTCCCCCAAAGACTGAACGAATGGTTCCTGTTGAGTTGTCCTCCATCCAAGCTGAATACTATCGTGCAATGCTAACAAAGAATTATCAGATATTGCGGAATATTGGGAAAGGGGTTGCACAACAATCGATGCTGAACATTGTAATGCAGTTAAGGAAAGTCTGCAATCATCCATATCTGATACCAGGCACTGAGCCTGACTGTGGGTCTGTAGAGTTCCTTCATGACATGCGGATAAAAGCTTCAGCCAAGTTGACACTTTTGCATTCTATGCTTAAGATTTTGCACAAAGAGGGTCACAGAGTCCTTATCTTTTCCCAGATGACCAAGCTCCTTGATATCCTTGAGGATTATTTGGCCATCGAATTTGGACCTAAAACATATGAGAGAGTAGATGGATCTGTTGCAGTGGCTGATCGTCAATCTGCAATTGCGCGTTTTAACCAAGACAGAAGTCGATTTGTCTTTTTGTTATCAACACGCTCTTGTGGCCTTGGGATCAATTTGGCAACTGCTGACACCGTCATTATTTATGATTCTGATTTCAACCCCCATGCTGATATTCAAGCTATGAATCGAGCACATCGAATCGGACAATCAAATAGACTTCTGGTTTATAGGCTTGTAGTTCGTGCTAGTGTTGAAGAGCGCATCTTGCAGCTTGCAAAGAAGAAACTTATGCTGGATCAGCTATTTGTGAATAAGTCAGAATCCCAAAAAGAAGTGGAAGATATTCTTAAGTGGGGAACAGAGGAACTTTTCAATGATTCTCCTGGCATGGATGGAAAAGATACAAGTGAAAATAATAGTAACAAAGATGAGGCAGTGCCAGATGTAGAGCATAAGCATAAGAAGAGGATTGGTAGCCTGGGAGATGTTTATGAAGATAAATGTACGGAAAACAGCAACAAGATTGTTTGGGATGAAACTGCGATTTTAAAGTTGCTTGACCGTGAAAATCTTCAATCTGGACTGACTGATAATGCGGAAGGAGATATGGAAAATGATATGCTTGGCTCTGTAAAGTCTATCGAATGGAATGAGGAGCCAATTGAAGAGCAGGGAGTTGAATCACCTCCTGGTGCAAGTGATGATATATGTGCTCAAAATACTGAAAGGAAAGAGGATAATGTGGTTAATGGTACAGAAGAAAATGAATGGGACAGACTCTTACGTCTTAGATGGGAGAAATATCAAAGTGAGGAGGAAGCAGCTCTTGGTCGTGGTAAGCGAATGCGGAAAGCTGTTTCTTACAGGGAAGCATATGCTGCACACCCAAGTGAAACATTAACTGAGAGCGGTGGTGGTGAAGATGAGCGTGAGCCTGAACCAGAGCCAGAGCGGGAGTACACACCCGCAGGACGAGCTCTAAAAGCAAAGTATGCTAAGCTCCGTGCTAGACAAAAAGAACGTCTAGCTCAGAGGAATGAAATTGAAGAATCTCGTCCTAGTGAGGGACTGCCTATTGAGTCACATCCTCAGTGTCCCATGAACACTGCCGAAGATGTTGATCAAGCGACTGGGGATCAAGCGGCTGGATTAGTTCAATTTCTCAGTGAGAAGTCTTCAGTAATTGACTTGGAGGATAACAAATTAGATGCTTCTAAAGCCAAGACTGACTCTCCCTTAAGATTGGGCAAGCTATCAAAGCATAAAAGCATTCGCCTCGATCTTTCTGTTAATCCACTTGACTACGCGTCTCCTGACATTTTATTTCCTAGACACCAACATCAGGGAACAAGCATGACTCATTCGATGCCCCCAAATAATTTGTTACCTGTTCTGGGACTGTGTGCCCCAAATGCTAGTCAAATAGAATCATCAAAAAAGAACTCAAGGTCGAATGGCAGACGGAGAGGAGCTGGACCAGAATTTCCATTTAGTCTAGCTCCTCATTCTGGGACCTTGCCTGAAACAGAAGCAAATGGTGATGAAGCAAAGCTATCAGATGCATCCGCAGAGGCATCACAACGTTTGAAGAGTAGCATCCCAAATGGTGGCTTGCCATTTAGATCGTATCCTCCGGCTTTTCAAGGAAAAGGTTATGATCACCCTGAAAGTTCTGGTGCCACCTTTTCTGATTTCCAAGAAAAGATGGCACTGCCCAACTTACCATTTGATGAGAAATTGCTATCAAGATTCCCGCTTTCATCTAAGAGCATGCAAAGTCCACATCTTGACTTCTTACCTAACTTGTCCTTGGGTAGCAGACTCGAAACTGTCAATGGCTCCTTGCAAGAGCTTCCAACAATGCCACTGTTTCCCAATTTAAAATTGCCCCCACAAGATGCGCCCAGATATAATCAGCTAGACAGAGAAGTCCATCCCACCTTGGGTTTGGGCCATATGCCAACTACATTTCCTTCATTATCTGATAACCACAGAAAGGTGCTGGAAAACATAATGATGAGGACTGGTTCTGCATCAAACAACTTGTTTAAGAGGAAATCAAAAGCAGATAGCTGGTCGGAAGATGAACTTGATTTCCTCTGGGTTGGTGTCCGTAGGCATGGAAGGGGCAATTGGGATGCAATGCTAAGAGACCCAAGGTTGAAATTCTCAAAGTTCAAAACTTCAGAAGATTTGTCAGCAAGATGGGAGGAGGAGCAACTCAAGCTTTTAGAAGGGTCAGCTTTTCCAGTGTCAAAATCATCCAGAAAGACTCCCAAGTCCTCGCAGTTTCCAAGCATATCTGATGGAATGATGGCCAGGGCACTGCATGGAAGTAGACTTGTTACACCTCCAAAGTTTCAGTCCCATTTGACGGACATGAAGTTGGGTTTTACTGATCTTACATCTGGCTTTCCACATTTTGAAGCATCAGATAGACTTGGTTTGCAAAATGAGCAATGCCCTCCTATTCCAACTTGGTTTCATGACAAATTCCGGGGGAATTTTGCCAGAGATTCTGCTGCTGGACCTTCAGACAGACCAGGGACATCTTCCAATGTTTCCATGGAGCAGCCATTTGTTGTCAATTCTTTTGGAAGCAGTTGCTTGGGTTCATTAGGTTTGAATCCCCCAAGCAGCTATGATTTGCAGCAGAAGGAAAATGAACAGGGTCCCTATAACTATGGGAAGTTGCCTAGTCTTCTGGATAGATCACTGAATGCTCTCCGTGATATGAATAATAATTTTGCAAGAGGTGAACCCAGTGCAGGATTCTTTCCTGATCCCAGGAGAGGTTTTTTAAAGGGTGAAGATGTTGCTGGAAGTAGTTCATCAAAGGACAAGCTACCTCATTGGCTACGGCAAGCTGTGAGTGCTCCTGCCAAACCCCCAGAACCTGACCTTCCCCCTACAGTATCGGCAATAGCTCGGTCAGTTCGATTGTTATATAGGGAGGAAGAGCCAACCATTCCTCCCTTTGTGATTCCAGGCCCACCTCCTTCACTACCAAAGGATCCAAGACGACGGCTGAAGAAGAAAAGGAAACAGAAGTTACATATCTTTAGGCGAATTTCCCAAGACATTGCCGGAAGCAGCCACTTAAGTGAAAATGCTTCAAGCTCCATTCCTGTGGCCCCATCATTTCCCTTGCTTTCACAGTCAATGGCACCACCTCCAGGCTTTCCACCAATGGAATCTGACCTCAATATGCCTCGGAGTTTAAATATGTTAAACCCATTAGCCTCGTTGCCACATCTGAATCAACAGATCAAAACAACCATGGGGCTGTCTCCTTCCCCTGAAGTGCTTCAACTGGTAGCATCCTGTGTTGCTCCAGGTCCACATCTACCAGCAGTTTCTGGCATGACAAGCTCAAGCGTCCCTGACTTGAAGCCATCATTGCCAGAATCAGCTGGCCAAGTAGGACGCTTGGACTCACAAGCTACATTGGCAAAAGATGAGGCTAAGCCGGGTTCACCTCTTAAGGAGTGCATTTCACTCCCAAAAGATAGAAAATGTGATACTGAAAGTGGGGATTCCAGCAAGACTCAGTCAGATCCCAATAGAACTGAGCGTCCCGATGCTGAGGAAGTATCTTCTGAGGGCACCGTCTCAGATCACCCTCTGAGTGACCGGGAATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006323 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007289 GO:0007399 GO:0007417 GO:0007420 GO:0008150 GO:0008152 GO:0008213 GO:0008285 GO:0009506 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0016581 GO:0016604 GO:0016607 GO:0017053 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019953 GO:0021895 GO:0021953 GO:0022008 GO:0022412 GO:0022414 GO:0023051 GO:0023056 GO:0030054 GO:0030154 GO:0030182 GO:0030900 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034728 GO:0034968 GO:0035064 GO:0035092 GO:0035093 GO:0036211 GO:0042127 GO:0042393 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043486 GO:0043543 GO:0043933 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0045165 GO:0048232 GO:0048468 GO:0048513 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048609 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051704 GO:0055044 GO:0060255 GO:0060322 GO:0060850 GO:0061628 GO:0065007 GO:0070013 GO:0070603 GO:0070734 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0098532 GO:0140030 GO:0140034 GO:1901564 GO:1901796 GO:1901798 GO:1902494 GO:1902531 GO:1902533 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05165 ko05203 map05165 map05203
Pfam Domains
Protein Families
Chromo DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

2423

Amino Acids

267.75

Weight (kDa)

6.18

Isoelectric Point (pI)

52.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 79 - 120 4.2e-09 PHD-finger
Chromo PF00385 753 - 803 2.4e-08 Chromo (CHRromatin Organisation MOdifier) domain
ResIII PF04851 846 - 1017 5.7e-10 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 849 - 1138 4.3e-79 SNF2-related domain
HDA2-3 PF11496 1086 - 1303 1.5e-11 Class II histone deacetylase complex subunits 2 and 3
Helicase_C PF00271 1162 - 1276 1.4e-22 Helicase conserved C-terminal domain
DUF1087 PF06465 1457 - 1498 2.4e-06 CHD subfamily II, DUF1087
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2231, 2868
AarI CACCTGC 2 cut(s) 1462, 2069
AasI GACNNNNNNGTC 3 cut(s) 4407, 5552, 5902
Acc36I ACCTGC 3 cut(s) 94, 1462, 2069
AccB1I GGYRCC 4 cut(s) 3044, 5300, 6790, 7229
AccB7I CCANNNNNTGG 2 cut(s) 2428, 5231
AccBSI CCGCTC 2 cut(s) 4533, 4576
AccI GTMKAC 2 cut(s) 2989, 5962
AccII CGCG 3 cut(s) 1084, 3670, 4931
AccIII TCCGGA 5 cut(s) 814, 844, 874, 904, 934
AclI AACGTT 2 cut(s) 2426, 5206
AcoI YGGCCR 3 cut(s) 3591, 5940, 7039
AfaI GTAC 7 cut(s) 28, 1742, 3033, 3077, 4129, 4378, 4583
AflII CTTAAG 6 cut(s) 320, 3509, 3971, 4861, 6724, 7106
AflIII ACRYGT 1 cut(s) 4929
AhdI GACNNNNNGTC 2 cut(s) 3439, 4930
AjuI GAANNNNNNNTTGG 4 cut(s) 4434, 4466, 5740, 5772
AleI CACNNNNGTG 2 cut(s) 4512, 6726
AloI GAACNNNNNNTCC 6 cut(s) 1482, 1514, 5703, 5735, 7183, 7215
Alw21I GWGCWC 6 cut(s) 728, 2421, 3817, 4339, 4603, 6502
Alw26I GTCTC 7 cut(s) 761, 1582, 2139, 4938, 5769, 6918, 7240
AlwNI CAGNNNCTG 8 cut(s) 45, 1555, 2021, 2392, 3425, 3647, 6521, 6983
Ama87I CYCGRG 1 cut(s) 995
Aor13HI TCCGGA 5 cut(s) 814, 844, 874, 904, 934
AoxI GGCC 9 cut(s) 2751, 2962, 3591, 3724, 5575, 5940, 6613, 6756, 7039
ApaI GGGCCC 1 cut(s) 2755
ArsI GACNNNNNNTTYG 4 cut(s) 4630, 4662, 5972, 6004
AseI ATTAAT 1 cut(s) 1436
Asp700I GAANNNNTTC 6 cut(s) 575, 2901, 3966, 4194, 6451, 6930
AspLEI GCGC 5 cut(s) 1176, 1975, 3670, 3885, 5527
AsuC2I CCSGG 3 cut(s) 6122, 7095, 7259
AsuII TTCGAA 1 cut(s) 564
AvaI CYCGRG 1 cut(s) 995
AvaII GGWCC 9 cut(s) 83, 1366, 2932, 3605, 5099, 5136, 6152, 6296, 6962
AxyI CCTNAGG 1 cut(s) 966
BaeGI GKGCMC 5 cut(s) 353, 2755, 5032, 5950, 7232
BalI TGGCCA 3 cut(s) 3593, 5942, 7041
BamHI GGATCC 2 cut(s) 1816, 6637
BanI GGYRCC 4 cut(s) 3044, 5300, 6790, 7229
BanII GRGCYC 5 cut(s) 728, 2061, 2625, 2755, 4603
BarI GAAGNNNNNNTAC 2 cut(s) 3438, 3470
BbsI GAAGAC 6 cut(s) 114, 146, 2861, 3114, 4791, 6317
Bbv12I GWGCWC 6 cut(s) 728, 2421, 3817, 4339, 4603, 6502
BbvCI CCTCAGC 1 cut(s) 7209
BceAI ACGGC 3 cut(s) 179, 6500, 6665
BcgI CGANNNNNNTGC 6 cut(s) 1460, 1494, 3342, 3376, 4882, 4916
BciVI GTATCC 1 cut(s) 5262
BclI TGATCA 3 cut(s) 1834, 4744, 5281
BcnI CCSGG 3 cut(s) 6122, 7095, 7259
BcoDI GTCTC 7 cut(s) 761, 1582, 2139, 4938, 5769, 6918, 7240
BfmI CTRYAG 5 cut(s) 1469, 1821, 1902, 3444, 6534
BfrI CTTAAG 6 cut(s) 320, 3509, 3971, 4861, 6724, 7106
BfuAI ACCTGC 3 cut(s) 94, 1462, 2069
BfuI GTATCC 1 cut(s) 5262
BglI GCCNNNNNGGC 1 cut(s) 2728
BglII AGATCT 1 cut(s) 680
BlpI GCTNAGC 2 cut(s) 4620, 7089
Bme18I GGWCC 9 cut(s) 83, 1366, 2932, 3605, 5099, 5136, 6152, 6296, 6962
BmeRI GACNNNNNGTC 2 cut(s) 3439, 4930
BmeT110I CYCGRG 1 cut(s) 995
BmrI ACTGGG 4 cut(s) 55, 606, 4764, 6381
BmuI ACTGGG 4 cut(s) 55, 606, 4764, 6381
BoxI GACNNNNGTC 2 cut(s) 196, 3687
BpiI GAAGAC 6 cut(s) 114, 146, 2861, 3114, 4791, 6317
BplI GAGNNNNNCTC 4 cut(s) 2368, 2400, 3260, 3292
BpmI CTGGAG 9 cut(s) 284, 714, 855, 885, 915, 945, 975, 6783, 6942
Bpu10I CCTNAGC 2 cut(s) 1026, 7209
Bpu1102I GCTNAGC 2 cut(s) 4620, 7089
Bpu14I TTCGAA 1 cut(s) 564
BpuEI CTTGAG 6 cut(s) 117, 1225, 3599, 5053, 5831, 6982
BpuMI CCSGG 3 cut(s) 6122, 7095, 7259
Bsa29I ATCGAT 2 cut(s) 2968, 3362
BsaBI GATNNNNATC 2 cut(s) 1839, 4743
BsaI GGTCTC 1 cut(s) 5769
BsaWI WCCGGW 5 cut(s) 814, 844, 874, 904, 934
BsaXI ACNNNNNCTCC 4 cut(s) 4840, 4870, 6580, 6610
Bse21I CCTNAGG 1 cut(s) 966
Bse3DI GCAATG 5 cut(s) 3309, 5772, 6089, 6705, 7022
Bse8I GATNNNNATC 2 cut(s) 1839, 4743
BseAI TCCGGA 5 cut(s) 814, 844, 874, 904, 934
BseCI ATCGAT 2 cut(s) 2968, 3362
BseJI GATNNNNATC 2 cut(s) 1839, 4743
BseMI GCAATG 5 cut(s) 3309, 5772, 6089, 6705, 7022
BseRI GAGGAG 8 cut(s) 2258, 3146, 4292, 4451, 5106, 5115, 5849, 5852
BseSI GKGCMC 5 cut(s) 353, 2755, 5032, 5950, 7232
BseYI CCCAGC 1 cut(s) 2151
BsgI GTGCAG 3 cut(s) 2097, 4488, 6411
Bsh1236I CGCG 3 cut(s) 1084, 3670, 4931
BshFI GGCC 9 cut(s) 2753, 2964, 3593, 3726, 5577, 5942, 6615, 6758, 7041
BshNI GGYRCC 4 cut(s) 3044, 5300, 6790, 7229
BshVI ATCGAT 2 cut(s) 2968, 3362
BsiHKAI GWGCWC 6 cut(s) 728, 2421, 3817, 4339, 4603, 6502
BsiHKCI CYCGRG 1 cut(s) 995
BsmAI GTCTC 7 cut(s) 761, 1582, 2139, 4938, 5769, 6918, 7240
BsmBI CGTCTC 2 cut(s) 4938, 7240
BsmI GAATGC 5 cut(s) 2348, 3499, 4473, 4893, 6349
BsnI GGCC 9 cut(s) 2753, 2964, 3593, 3726, 5577, 5942, 6615, 6758, 7041
Bso31I GGTCTC 1 cut(s) 5769
BsoBI CYCGRG 1 cut(s) 995
Bsp119I TTCGAA 1 cut(s) 564
Bsp120I GGGCCC 1 cut(s) 2751
Bsp13I TCCGGA 5 cut(s) 814, 844, 874, 904, 934
Bsp1407I TGTACA 2 cut(s) 1740, 3075
Bsp1720I GCTNAGC 2 cut(s) 4620, 7089
Bsp19I CCATGG 5 cut(s) 1294, 1782, 2779, 6189, 6903
BspANI GGCC 9 cut(s) 2753, 2964, 3593, 3726, 5577, 5942, 6615, 6758, 7041
BspDI ATCGAT 2 cut(s) 2968, 3362
BspEI TCCGGA 5 cut(s) 814, 844, 874, 904, 934
BspFNI CGCG 3 cut(s) 1084, 3670, 4931
BspHI TCATGA 3 cut(s) 1933, 3457, 6109
BspMAI CTGCAG 3 cut(s) 1473, 1825, 1906
BspMI ACCTGC 3 cut(s) 94, 1462, 2069
BspQI GCTCTTC 4 cut(s) 2049, 3873, 4284, 6576
BspT104I TTCGAA 1 cut(s) 564
BspT107I GGYRCC 4 cut(s) 3044, 5300, 6790, 7229
BspTI CTTAAG 6 cut(s) 320, 3509, 3971, 4861, 6724, 7106
BspTNI GGTCTC 1 cut(s) 5769
BsrBI CCGCTC 2 cut(s) 4533, 4576
BsrDI GCAATG 5 cut(s) 3309, 5772, 6089, 6705, 7022
BsrGI TGTACA 2 cut(s) 1740, 3075
BstAFI CTTAAG 6 cut(s) 320, 3509, 3971, 4861, 6724, 7106
BstAPI GCANNNNNTGC 3 cut(s) 3505, 4502, 4616
BstAUI TGTACA 2 cut(s) 1740, 3075
BstBI TTCGAA 1 cut(s) 564
BstDSI CCRYGG 6 cut(s) 1294, 1782, 2281, 2779, 6189, 6903
BstENI CCTNNNNNAGG 1 cut(s) 1373
BstFNI CGCG 3 cut(s) 1084, 3670, 4931
BstHHI GCGC 5 cut(s) 1176, 1975, 3670, 3885, 5527
BstMAI GTCTC 7 cut(s) 761, 1582, 2139, 4938, 5769, 6918, 7240
BstNSI RCATGY 5 cut(s) 1739, 1979, 2828, 3466, 5398
BstPAI GACNNNNGTC 2 cut(s) 196, 3687
BstSFI CTRYAG 5 cut(s) 1469, 1821, 1902, 3444, 6534
BstSLI GKGCMC 5 cut(s) 353, 2755, 5032, 5950, 7232
BstUI CGCG 3 cut(s) 1084, 3670, 4931
BstV2I GAAGAC 6 cut(s) 114, 146, 2861, 3114, 4791, 6317
BstX2I RGATCY 7 cut(s) 680, 1223, 1552, 1816, 3632, 6637, 7180
BstXI CCANNNNNNTGG 1 cut(s) 6754
BstYI RGATCY 7 cut(s) 680, 1223, 1552, 1816, 3632, 6637, 7180
Bsu15I ATCGAT 2 cut(s) 2968, 3362
Bsu36I CCTNAGG 1 cut(s) 966
BsuI GTATCC 1 cut(s) 5262
BsuRI GGCC 9 cut(s) 2753, 2964, 3593, 3726, 5577, 5942, 6615, 6758, 7041
BsuTUI ATCGAT 2 cut(s) 2968, 3362
BtgI CCRYGG 6 cut(s) 1294, 1782, 2281, 2779, 6189, 6903
BtsI GCAGTG 6 cut(s) 353, 3648, 4065, 4728, 5333, 5948
BveI ACCTGC 3 cut(s) 94, 1462, 2069
CaiI CAGNNNCTG 8 cut(s) 45, 1555, 2021, 2392, 3425, 3647, 6521, 6983
CciI TCATGA 3 cut(s) 1933, 3457, 6109
CfoI GCGC 5 cut(s) 1176, 1975, 3670, 3885, 5527
ClaI ATCGAT 2 cut(s) 2968, 3362
CseI GACGC 5 cut(s) 797, 4920, 6991, 7059, 7187
Csp6I GTAC 7 cut(s) 27, 1741, 3032, 3076, 4128, 4377, 4582
CviQI GTAC 7 cut(s) 27, 1741, 3032, 3076, 4128, 4377, 4582
DraI TTTAAA 7 cut(s) 390, 1860, 2290, 4173, 5505, 6426, 6846
DrdI GACNNNNNNGTC 3 cut(s) 4407, 5552, 5902
DriI GACNNNNNGTC 2 cut(s) 3439, 4930
DseDI GACNNNNNNGTC 3 cut(s) 4407, 5552, 5902
EaeI YGGCCR 3 cut(s) 3591, 5940, 7039
Eam1105I GACNNNNNGTC 2 cut(s) 3439, 4930
Ecl136II GAGCTC 2 cut(s) 726, 4601
Eco24I GRGCYC 5 cut(s) 728, 2061, 2625, 2755, 4603
Eco31I GGTCTC 1 cut(s) 5769
Eco32I GATATC 2 cut(s) 2032, 3574
Eco47I GGWCC 9 cut(s) 83, 1366, 2932, 3605, 5099, 5136, 6152, 6296, 6962
Eco53kI GAGCTC 2 cut(s) 726, 4601
Eco81I CCTNAGG 1 cut(s) 966
Eco88I CYCGRG 1 cut(s) 995
EcoICRI GAGCTC 2 cut(s) 726, 4601
EcoNI CCTNNNNNAGG 1 cut(s) 1373
EcoO109I RGGNCCY 5 cut(s) 1366, 2752, 2932, 5136, 6296
EcoRV GATATC 2 cut(s) 2032, 3574
EcoT22I ATGCAT 2 cut(s) 1078, 5188
EcoT38I GRGCYC 5 cut(s) 728, 2061, 2625, 2755, 4603
Esp3I CGTCTC 2 cut(s) 4938, 7240
FalI AAGNNNNNCTT 6 cut(s) 3954, 3986, 4434, 4466, 5697, 5729
FauI CCCGC 4 cut(s) 2259, 4569, 4597, 5385
FauNDI CATATG 5 cut(s) 2893, 3198, 3616, 4498, 5580
FbaI TGATCA 3 cut(s) 1834, 4744, 5281
FblI GTMKAC 2 cut(s) 2989, 5962
FriOI GRGCYC 5 cut(s) 728, 2061, 2625, 2755, 4603
GlaI GCGC 5 cut(s) 1175, 1974, 3669, 3884, 5526
GsaI CCCAGC 1 cut(s) 2155
GsuI CTGGAG 9 cut(s) 284, 714, 855, 885, 915, 945, 975, 6783, 6942
HaeIII GGCC 9 cut(s) 2753, 2964, 3593, 3726, 5577, 5942, 6615, 6758, 7041
HgaI GACGC 5 cut(s) 797, 4920, 6991, 7059, 7187
HhaI GCGC 5 cut(s) 1176, 1975, 3670, 3885, 5527
Hin6I GCGC 5 cut(s) 1174, 1973, 3668, 3883, 5525
HinP1I GCGC 5 cut(s) 1174, 1973, 3668, 3883, 5525
HincII GTYRAC 3 cut(s) 21, 3039, 3489
HindII GTYRAC 3 cut(s) 21, 3039, 3489
HindIII AAGCTT 4 cut(s) 71, 2307, 3474, 5849
Hpy99I CGWCG 2 cut(s) 165, 6651
HpyCH4IV ACGT 6 cut(s) 64, 2074, 2426, 4408, 4645, 5206
HpySE526I ACGT 6 cut(s) 64, 2074, 2426, 4408, 4645, 5206
HspAI GCGC 5 cut(s) 1174, 1973, 3668, 3883, 5525
KflI GGGWCCC 2 cut(s) 2932, 6296
Kpn2I TCCGGA 5 cut(s) 814, 844, 874, 904, 934
Ksp22I TGATCA 3 cut(s) 1834, 4744, 5281
LguI GCTCTTC 4 cut(s) 2049, 3873, 4284, 6576
MaeII ACGT 6 cut(s) 64, 2074, 2426, 4408, 4645, 5206
MbiI CCGCTC 2 cut(s) 4533, 4576
MfeI CAATTG 4 cut(s) 2563, 3663, 4284, 5755
MflI RGATCY 7 cut(s) 680, 1223, 1552, 1816, 3632, 6637, 7180
MlsI TGGCCA 3 cut(s) 3593, 5942, 7041
MluI ACGCGT 1 cut(s) 4929
MluNI TGGCCA 3 cut(s) 3593, 5942, 7041
MmeI TCCRAC 5 cut(s) 1794, 3046, 5504, 5682, 6122
Mox20I TGGCCA 3 cut(s) 3593, 5942, 7041
Mph1103I ATGCAT 2 cut(s) 1078, 5188
MroI TCCGGA 5 cut(s) 814, 844, 874, 904, 934
MroXI GAANNNNTTC 6 cut(s) 575, 2901, 3966, 4194, 6451, 6930
MscI TGGCCA 3 cut(s) 3593, 5942, 7041
MslI CAYNNNNRTG 8 cut(s) 2784, 2829, 2925, 3377, 4512, 5639, 6726, 6752
Msp20I TGGCCA 3 cut(s) 3593, 5942, 7041
MspA1I CMGCKG 9 cut(s) 626, 824, 854, 884, 914, 944, 1544, 2266, 7037
MspCI CTTAAG 6 cut(s) 320, 3509, 3971, 4861, 6724, 7106
MunI CAATTG 4 cut(s) 2563, 3663, 4284, 5755
Mva1269I GAATGC 5 cut(s) 2348, 3499, 4473, 4893, 6349
MvnI CGCG 3 cut(s) 1084, 3670, 4931
NciI CCSGG 3 cut(s) 6122, 7095, 7259
NcoI CCATGG 5 cut(s) 1294, 1782, 2779, 6189, 6903
NdeI CATATG 5 cut(s) 2893, 3198, 3616, 4498, 5580
NsiI ATGCAT 2 cut(s) 1078, 5188
NspI RCATGY 5 cut(s) 1739, 1979, 2828, 3466, 5398
NspV TTCGAA 1 cut(s) 564
OliI CACNNNNGTG 2 cut(s) 4512, 6726
PaeI GCATGC 2 cut(s) 2828, 5398
PagI TCATGA 3 cut(s) 1933, 3457, 6109
PaqCI CACCTGC 2 cut(s) 1462, 2069
PasI CCCWGGG 2 cut(s) 1247, 1336
PciSI GCTCTTC 4 cut(s) 2049, 3873, 4284, 6576
PcsI WCGNNNNNNNCGW 4 cut(s) 1845, 3817, 4462, 6559
PctI GAATGC 5 cut(s) 2348, 3499, 4473, 4893, 6349
PdmI GAANNNNTTC 6 cut(s) 575, 2901, 3966, 4194, 6451, 6930
PflFI GACNNNGTC 2 cut(s) 3755, 7174
PflMI CCANNNNNTGG 2 cut(s) 2428, 5231
PpuMI RGGWCCY 4 cut(s) 1366, 2932, 5136, 6296
PshAI GACNNNNGTC 2 cut(s) 196, 3687
PshBI ATTAAT 1 cut(s) 1436
PsiI TTATAA 2 cut(s) 2231, 2868
Psp124BI GAGCTC 2 cut(s) 728, 4603
Psp1406I AACGTT 2 cut(s) 2426, 5206
Psp5II RGGWCCY 4 cut(s) 1366, 2932, 5136, 6296
PspFI CCCAGC 1 cut(s) 2151
PspOMI GGGCCC 1 cut(s) 2751
PspPPI RGGWCCY 4 cut(s) 1366, 2932, 5136, 6296
PstI CTGCAG 3 cut(s) 1473, 1825, 1906
PstNI CAGNNNCTG 8 cut(s) 45, 1555, 2021, 2392, 3425, 3647, 6521, 6983
PsuI RGATCY 7 cut(s) 680, 1223, 1552, 1816, 3632, 6637, 7180
PsyI GACNNNGTC 2 cut(s) 3755, 7174
PvuII CAGCTG 8 cut(s) 626, 824, 854, 884, 914, 944, 1544, 7037
RsaI GTAC 7 cut(s) 28, 1742, 3033, 3077, 4129, 4378, 4583
RsaNI GTAC 7 cut(s) 27, 1741, 3032, 3076, 4128, 4377, 4582
RseI CAYNNNNRTG 8 cut(s) 2784, 2829, 2925, 3377, 4512, 5639, 6726, 6752
SacI GAGCTC 2 cut(s) 728, 4603
SapI GCTCTTC 4 cut(s) 2049, 3873, 4284, 6576
SbfI CCTGCAGG 2 cut(s) 1473, 1825
SdaI CCTGCAGG 2 cut(s) 1473, 1825
SfcI CTRYAG 5 cut(s) 1469, 1821, 1902, 3444, 6534
SfuI TTCGAA 1 cut(s) 564
SinI GGWCC 9 cut(s) 83, 1366, 2932, 3605, 5099, 5136, 6152, 6296, 6962
SmiMI CAYNNNNRTG 8 cut(s) 2784, 2829, 2925, 3377, 4512, 5639, 6726, 6752
SphI GCATGC 2 cut(s) 2828, 5398
Sse8387I CCTGCAGG 2 cut(s) 1473, 1825
SspI AATATT 3 cut(s) 1912, 3235, 3337
SstI GAGCTC 2 cut(s) 728, 4603
TaiI ACGT 6 cut(s) 67, 2077, 2429, 4411, 4648, 5209
TaqII GACCGA 1 cut(s) 6543
TatI WGTACW 5 cut(s) 26, 1740, 3031, 3075, 4581
TauI GCSGC 2 cut(s) 1646, 4769
TspGWI ACGGA 7 cut(s) 2270, 4145, 4616, 5101, 5726, 6014, 6341
Tth111I GACNNNGTC 2 cut(s) 3755, 7174
Van91I CCANNNNNTGG 2 cut(s) 2428, 5231
Vha464I CTTAAG 6 cut(s) 320, 3509, 3971, 4861, 6724, 7106
VpaK11BI GGWCC 9 cut(s) 83, 1366, 2932, 3605, 5099, 5136, 6152, 6296, 6962
VspI ATTAAT 1 cut(s) 1436
XagI CCTNNNNNAGG 1 cut(s) 1373
XceI RCATGY 5 cut(s) 1739, 1979, 2828, 3466, 5398
XcmI CCANNNNNNNNNTGG 2 cut(s) 5569, 6187
XmiI GTMKAC 2 cut(s) 2989, 5962
XmnI GAANNNNTTC 6 cut(s) 575, 2901, 3966, 4194, 6451, 6930
Zsp2I ATGCAT 2 cut(s) 1078, 5188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.