Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8387783.1

Orthogroup ID

OG0005784

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1078

Gene Structure 1077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8387783.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 826 bp

atgattaacagaaactgggtgttgaaacgaaaacgtagaaagcttccttatggacctgctctatctaatggcaaagaagacagttcagcagcatcagaatctcaagggaagacatcttcttccgctaaacgacggctgactaatgaaattattactgatcgactttcgtccaagaagaaaggaaacgatgggtattactatgaatgtgtggtctgtgacctcggtggtaacttgttgtgttgtgatagttgtccccaaacctatcatctccagtgtcttaatccacctcttaagcggattccgaatgggaagtggcagtgcccaaactgctgtcagaaaagtgacgtgccagagcctttaaattatctagctgataacatttcaaaacgagcaaggacaaagattgccacctctaagtccaaagctgaagttaagtcatctgacagagagaaagtttcgcagatttttgggaacaccattgttgcaaagaaaagatcatcaagcaaagggaaagctcatcgagttaaatccttcgaaaagaaaccattctcccagatagatatatcttctagcacgaagcccagtcattcatcagctggttgttctgtggagggtatttccttgtctgagaatgttggcgatgaaaatagatctaatctttctccaccaggtgaatccgcagacaaaaagttgagctctccagctaaagaggtttcatctcattctaaaatatcagagacaaatgaagaagctccggaggcagctgtgacaactggagaagctccggaggcagctgtgacaactggagaagctccggaggcagctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006323 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007289 GO:0007399 GO:0007417 GO:0007420 GO:0008150 GO:0008152 GO:0008213 GO:0008285 GO:0009506 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0016581 GO:0016604 GO:0016607 GO:0017053 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019953 GO:0021895 GO:0021953 GO:0022008 GO:0022412 GO:0022414 GO:0023051 GO:0023056 GO:0030054 GO:0030154 GO:0030182 GO:0030900 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034728 GO:0034968 GO:0035064 GO:0035092 GO:0035093 GO:0036211 GO:0042127 GO:0042393 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043486 GO:0043543 GO:0043933 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0045165 GO:0048232 GO:0048468 GO:0048513 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048609 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051704 GO:0055044 GO:0060255 GO:0060322 GO:0060850 GO:0061628 GO:0065007 GO:0070013 GO:0070603 GO:0070734 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0098532 GO:0140030 GO:0140034 GO:1901564 GO:1901796 GO:1901798 GO:1902494 GO:1902531 GO:1902533 GO:1903506 GO:1904949 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

Chromo DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

275

Amino Acids

29.72

Weight (kDa)

9.2

Isoelectric Point (pI)

52.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44800
fragaria_vesca	FvH4_3g12610 FvH4_3g12610 FvH4_3g12610 FvH4_3g12610 FvH4_3g12610 FvH4_3g12610
malus_domestica	MD05G1249300.v1.1 MD10G1229800.v1.1
prunus_persica	Prupe.4G114900_v2.0.a1 Prupe.4G114900_v2.0.a1 Prupe.4G114900_v2.0.a1
pyrus_communis	pycom05g22640 pycom10g19330
rosa_chinensis	RchiOBHm_Chr5g0020581
rosa_laevigata	RLG00000032539
rosa_multiflora	Rmu_co8387783.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057710
rosa_rugosa	Rorug05G0061000 Rorug05G0061100 Rorug05G0061200 Rorug05G0061300 Rorug05G0061400
rosa_samantha	Rh5AG151300 Rh5BG150800 Rh5CG162200 Rh5DG150200
rosa_wichuraiana	Rw5G013390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	64
AccIII	TCCGGA	3 cut(s)	754, 784, 814
AciI	CCGC	3 cut(s)	123, 295, 678
AcuI	CTGAAG	1 cut(s)	447
AdeI	CACNNNGTG	1 cut(s)	671
AflII	CTTAAG	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	25, 384
AjiI	CACGTC	1 cut(s)	346
AjnI	CCWGG	1 cut(s)	667
Alw21I	GWGCWC	1 cut(s)	698
Alw26I	GTCTC	1 cut(s)	731
AlwNI	CAGNNNCTG	1 cut(s)	15
Aor13HI	TCCGGA	3 cut(s)	754, 784, 814
ApeKI	GCWGC	4 cut(s)	89, 761, 791, 821
Asp700I	GAANNNNTTC	1 cut(s)	545
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	683
AsuII	TTCGAA	1 cut(s)	534
AvaII	GGWCC	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	698
BbsI	GAAGAC	2 cut(s)	84, 116
Bbv12I	GWGCWC	1 cut(s)	698
BbvI	GCAGC	3 cut(s)	101, 773, 803
BccI	CCATC	1 cut(s)	182
BceAI	ACGGC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	669
BcoDI	GTCTC	1 cut(s)	731
BfaI	CTAG	2 cut(s)	368, 570
BfrI	CTTAAG	1 cut(s)	290
BfuAI	ACCTGC	1 cut(s)	64
BglII	AGATCT	1 cut(s)	650
BisI	GCNGC	4 cut(s)	90, 762, 792, 822
BlsI	GCNGC	4 cut(s)	91, 763, 793, 823
Bme1390I	CCNGG	1 cut(s)	669
Bme18I	GGWCC	1 cut(s)	53
BmgBI	CACGTC	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	669
BmrI	ACTGGG	2 cut(s)	25, 576
BmsI	GCATC	1 cut(s)	101
BmuI	ACTGGG	2 cut(s)	25, 576
BoxI	GACNNNNGTC	1 cut(s)	166
BpiI	GAAGAC	2 cut(s)	84, 116
BpmI	CTGGAG	4 cut(s)	254, 684, 795, 825
Bpu14I	TTCGAA	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	220
BsaWI	WCCGGW	3 cut(s)	754, 784, 814
Bse1I	ACTGG	5 cut(s)	20, 271, 582, 778, 808
BseAI	TCCGGA	3 cut(s)	754, 784, 814
BseBI	CCWGG	1 cut(s)	669
BseDI	CCNNGG	1 cut(s)	220
BseMII	CTCAG	1 cut(s)	618
BseNI	ACTGG	5 cut(s)	20, 271, 582, 778, 808
BseSI	GKGCMC	1 cut(s)	323
BseXI	GCAGC	3 cut(s)	101, 773, 803
BsiHKAI	GWGCWC	1 cut(s)	698
BsiSI	CCGG	3 cut(s)	755, 785, 815
BslFI	GGGAC	1 cut(s)	237
BsmAI	GTCTC	1 cut(s)	731
BsmFI	GGGAC	1 cut(s)	237
Bsp119I	TTCGAA	1 cut(s)	534
Bsp1286I	GDGCHC	2 cut(s)	323, 698
Bsp13I	TCCGGA	3 cut(s)	754, 784, 814
Bsp143I	GATC	3 cut(s)	157, 494, 650
BspACI	CCGC	3 cut(s)	123, 295, 678
BspCNI	CTCAG	1 cut(s)	619
BspEI	TCCGGA	3 cut(s)	754, 784, 814
BspMI	ACCTGC	1 cut(s)	64
BspT104I	TTCGAA	1 cut(s)	534
BspTI	CTTAAG	1 cut(s)	290
BsrI	ACTGG	5 cut(s)	20, 271, 582, 778, 808
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	3 cut(s)	157, 494, 650
Bst2UI	CCWGG	1 cut(s)	669
Bst4CI	ACNGT	1 cut(s)	83
BstAFI	CTTAAG	1 cut(s)	290
BstBI	TTCGAA	1 cut(s)	534
BstDEI	CTNAG	2 cut(s)	414, 627
BstKTI	GATC	3 cut(s)	160, 497, 653
BstMAI	GTCTC	1 cut(s)	731
BstMBI	GATC	3 cut(s)	157, 494, 650
BstMWI	GCNNNNNNNGC	4 cut(s)	327, 758, 788, 818
BstNI	CCWGG	1 cut(s)	669
BstPAI	GACNNNNGTC	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	667
BstSLI	GKGCMC	1 cut(s)	323
BstV1I	GCAGC	3 cut(s)	101, 773, 803
BstV2I	GAAGAC	2 cut(s)	84, 116
BstX2I	RGATCY	1 cut(s)	650
BstYI	RGATCY	1 cut(s)	650
BtgZI	GCGATG	1 cut(s)	654
BtrI	CACGTC	1 cut(s)	346
BtsI	GCAGTG	1 cut(s)	323
BtsIMutI	CAGTG	2 cut(s)	278, 323
BveI	ACCTGC	1 cut(s)	64
CaiI	CAGNNNCTG	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	53
CsiI	ACCWGGT	1 cut(s)	667
DdeI	CTNAG	2 cut(s)	414, 627
DpnI	GATC	3 cut(s)	159, 496, 652
DpnII	GATC	3 cut(s)	157, 494, 650
DraI	TTTAAA	1 cut(s)	360
DraIII	CACNNNGTG	1 cut(s)	671
Ecl136II	GAGCTC	1 cut(s)	696
Eco24I	GRGCYC	1 cut(s)	698
Eco47I	GGWCC	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	696
Eco57I	CTGAAG	1 cut(s)	447
EcoICRI	GAGCTC	1 cut(s)	696
EcoRII	CCWGG	1 cut(s)	667
EcoT38I	GRGCYC	1 cut(s)	698
FaiI	YATR	3 cut(s)	51, 201, 563
FaqI	GGGAC	1 cut(s)	237
Fnu4HI	GCNGC	4 cut(s)	90, 762, 792, 822
FriOI	GRGCYC	1 cut(s)	698
Fsp4HI	GCNGC	4 cut(s)	90, 762, 792, 822
FspBI	CTAG	2 cut(s)	368, 570
GluI	GCNGC	4 cut(s)	90, 762, 792, 822
GsuI	CTGGAG	4 cut(s)	254, 684, 795, 825
HapII	CCGG	3 cut(s)	755, 785, 815
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	3 cut(s)	98, 298, 674
HpaII	CCGG	3 cut(s)	755, 785, 815
HphI	GGTGA	1 cut(s)	683
Hpy188I	TCNGA	6 cut(s)	97, 303, 336, 442, 628, 736
Hpy188III	TCNNGA	3 cut(s)	755, 785, 815
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	1 cut(s)	541
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4IV	ACGT	2 cut(s)	34, 345
HpyCH4V	TGCA	1 cut(s)	485
HpyF10VI	GCNNNNNNNGC	4 cut(s)	327, 758, 788, 818
HpyF3I	CTNAG	2 cut(s)	414, 627
HpySE526I	ACGT	2 cut(s)	34, 345
Kpn2I	TCCGGA	3 cut(s)	754, 784, 814
Kzo9I	GATC	3 cut(s)	157, 494, 650
LmnI	GCTCC	3 cut(s)	757, 787, 817
Lsp1109I	GCAGC	3 cut(s)	101, 773, 803
LweI	GCATC	1 cut(s)	101
MabI	ACCWGGT	1 cut(s)	667
MaeI	CTAG	2 cut(s)	368, 570
MaeII	ACGT	2 cut(s)	34, 345
MaeIII	GTNAC	5 cut(s)	215, 227, 341, 766, 796
MalI	GATC	3 cut(s)	159, 496, 652
MboI	GATC	3 cut(s)	157, 494, 650
MboII	GAAGA	7 cut(s)	89, 108, 111, 121, 187, 558, 758
MflI	RGATCY	1 cut(s)	650
MhlI	GDGCHC	2 cut(s)	323, 698
MluCI	AATT	2 cut(s)	147, 361
MnlI	CCTC	8 cut(s)	230, 297, 421, 604, 703, 751, 781, 811
MroI	TCCGGA	3 cut(s)	754, 784, 814
MroXI	GAANNNNTTC	1 cut(s)	545
MseI	TTAA	6 cut(s)	6, 279, 291, 359, 432, 525
MspA1I	CMGCKG	4 cut(s)	596, 764, 794, 824
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	3 cut(s)	755, 785, 815
MspR9I	CCNGG	1 cut(s)	669
MvaI	CCWGG	1 cut(s)	669
MwoI	GCNNNNNNNGC	4 cut(s)	327, 758, 788, 818
NdeII	GATC	3 cut(s)	157, 494, 650
NmuCI	GTSAC	4 cut(s)	215, 341, 766, 796
NspV	TTCGAA	1 cut(s)	534
PdmI	GAANNNNTTC	1 cut(s)	545
PfeI	GAWTC	3 cut(s)	98, 298, 674
PkrI	GCNGC	4 cut(s)	91, 763, 793, 823
PshAI	GACNNNNGTC	1 cut(s)	166
Psp124BI	GAGCTC	1 cut(s)	698
Psp6I	CCWGG	1 cut(s)	667
PspGI	CCWGG	1 cut(s)	667
PspPI	GGNCC	1 cut(s)	53
PstNI	CAGNNNCTG	1 cut(s)	15
PsuI	RGATCY	1 cut(s)	650
PvuII	CAGCTG	4 cut(s)	596, 764, 794, 824
SacI	GAGCTC	1 cut(s)	698
SaqAI	TTAA	6 cut(s)	6, 279, 291, 359, 432, 525
SatI	GCNGC	4 cut(s)	90, 762, 792, 822
Sau3AI	GATC	3 cut(s)	157, 494, 650
Sau96I	GGNCC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	669
SduI	GDGCHC	2 cut(s)	323, 698
SexAI	ACCWGGT	1 cut(s)	667
SfaNI	GCATC	1 cut(s)	101
SfuI	TTCGAA	1 cut(s)	534
SinI	GGWCC	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	102, 290
SmoI	CTYRAG	2 cut(s)	102, 290
Sse9I	AATT	2 cut(s)	147, 361
SsiI	CCGC	3 cut(s)	123, 295, 678
SspMI	CTAG	2 cut(s)	368, 570
SstI	GAGCTC	1 cut(s)	698
StyD4I	CCNGG	1 cut(s)	667
TaaI	ACNGT	1 cut(s)	83
TaiI	ACGT	2 cut(s)	37, 348
TaqI	TCGA	3 cut(s)	160, 520, 534
TasI	AATT	2 cut(s)	147, 361
TfiI	GAWTC	3 cut(s)	98, 298, 674
Tru1I	TTAA	6 cut(s)	6, 279, 291, 359, 432, 525
Tru9I	TTAA	6 cut(s)	6, 279, 291, 359, 432, 525
TscAI	CASTG	2 cut(s)	278, 323
TseFI	GTSAC	4 cut(s)	215, 341, 766, 796
TseI	GCWGC	4 cut(s)	89, 761, 791, 821
Tsp45I	GTSAC	4 cut(s)	215, 341, 766, 796
TspDTI	ATGAA	6 cut(s)	159, 216, 579, 657, 705, 759
TspRI	CASTG	2 cut(s)	278, 323
Vha464I	CTTAAG	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	545
XspI	CTAG	2 cut(s)	368, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.