Rh5CG162200

DUF1087

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0005784
Physical Location & Seq
Forward (+)
14984790 .. 14998591
13802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG162200.1

Sequence Viewer

Length: 7239 bp
ATGAAGGATAACAGCTCGTCAACAAGTACAATGATTAACAGAAACTGGGTCTTGAAACGAAAACGTAGAAAGCTTCCTTATGGACCTGCTCTATCTAATGGCAAAGAAGACAGTTCAGCAGCATCAGAATCTCAAGGGAAGACATCTTCTTCCGCTAAACGACGGCTGACTAATGAAATTATTTCTGATCGACTTTCGTCCAAGAAGAAAGGAAACGATGGGTATTACTATGAATGTGTGGTCTGTGACCTCGGTGGTAACTTGTTGTGTTGTGATAGTTGTCCCCAAACCTATCATCTCCAGTGTCTTAATCCACCTCTTAAGCGGATTCCGAATGGGAAGTGGCAGTGCCCAAACTGCTGTCAGAAAAGTGATGTGCCAGAGCCTTTAAATTATCTAGCTGATAACATTTCAAAACGAGCAAGGACAAAGATTTCCACCTCTAAGTCCAAAGCTGAAGTTAAGTCATCTGAAAGAGAGAAAGTTTCGCAGATTTTTGGGAACACCATTGTTGCAAAGAAAAGATCATCAAGCAAAGGGAAAGCTCATGGAGTTAAATCCTTTGAAAAGAAACCATTCTCCCAGATAGATATATCTTCTAGCACGAAGCCCAGTCATTCATCAGCTGGCTGTTCTGTGGAGGGTATTTCATTGTCTGAGAATGTTGGCGATGAAAATAGATCTAATCTTTCCCCACCAGATGATTCCGCAGACAAAAAGTTGAGCTCTCCGGCTAAAGAGGTTTCATCTCATTCTAAAATATCAGAGACAAATGAAGAAGCTCCGGAGGCAGCTGTGACAACTGGAGAAGCTCCGGAAGCAGCTGTGACAACTGGAGAAGCTCCGGAGGCAGCTGTGACAACTGGAGAAGCTCCGGAGGCAGCTGTGACAACTGGAGAAGCTCCGGAGGCAGCCGTGACAACTGGAGAAGCTCCTGAGGCATCTGTGCCAAATGGAGAAGCTCCTGAGGCATCCGTGACAAATGGAGAAGCTACTGAGGCATCTGTCCTTCCTGAAGTGAAGCCTGACCCGTCTTGTGATGATGCATCTCCGCGTAAGACCATTGTTCTTGCCATCAGTGCTGCTGCTGGCAAAGCTAGAAAAAGAAAACACAAAGGCAATAATGAGAAGAGTAAAAAGAAGCGCAGGACAGAGAAGAGGAAAACTGTCATTGGTGTTTCTAAACAGTCTGGATCTAAAGCAAATACCTCAAGCCCAGGGACTCGTATTCGTAAAACACTTCGTAAGCATAAATCTCTCAACCATGGGGTTTCTGCATCTTTGGCAAGGGAGGATGTCACAACCAAGGGTTCAGATGTCCAGATGAAAGACAAGGACCTTACTGAGGAAGCAAAAGACCAATTTCATAATGCAGATAAAGCCGGAAATCATGGAGTTGAAACATTAATGCAGAAGGATAGTCTTACTGCTGAACTCCTGCAGGTGGATAGGGTTTTGGGATGTCGAGTTCAAGGTAATCATGCTGCTGCTTCTTGTCACTTATCAGTGACAGCCGCCCAGGACCTGAGTTCTGATGATGCACAAATCTCAGAAAATAATAACAGACTGTCACAGGAAAATTTTGCTTGCGAAACTGTTATGGATGTTGGGGCGGCTAAAAATCTCACTGAGGGTTGTCAAGGAGTTGTTAAGGGTGTTGATGGGGATGACAGCAAGAAGGATGATATAAGAGTGGACAAACTGCATGTGTACAGAAGGTCTATGAACAAAGAAGGTAAAAGAGCTAATTCCATGGATTTGTCTAGGAAAGATACCAAGGAGTTGGATCCTGCAGGCATAATTGATCACGATCCAAACGAATCTGCTTTAAATGCTGATGATCCAGAAAAAACAAATGAAGAAGTAGTGACTGCAGAGAATATTGATGTCAATTTGAACAGTCACGATAAAGATAAAGAAGAGGTTCTGGAAATTTGTGAAGCGCATGTTTCTGCTGATACCAATGACAAGAGTGATGTCAATACAGAAGCTGGAACTGATATCTGTGCTGAAAACAAAAGTGAAGAGCCCACACTGGCTGAACGTGCAGGTGATGGTGTTGAGACGGTATCGTATGAATTTTTAGTTAAGTGGGTAGGTAAGTCTCATATTCATAATAGCTGGGTTTCTGAATCTGAGTTAAAAGTCCTGGCAAAGAGGAAACTAGAAAACTATAAGGCAAAGTATGGAATGGCTGTTATAAATATATGCGAGGAGAGATGGAAGCAACCACAGCGGGTGATCGCTCTCCGTGGATTTAAAGATGGTTCAGGTGAAGCTTTTGTGAAATGGACTGGTTTGCCTTATGATGAATGCACTTGGGAAAGATTGGATGAACCTGTAATGAGAAATTCTCATAATCTGGTTGAATTATTTAGTCAGTTTGAGCACCAAACGTTGGTAAATGATGCTCTTAAAGATGATTCATCAAGAGGGAAGGTTAGCCGACAGCAAAATGAAATACTTGCCCTGACAGAGCAGCCCAAGGAACTAAAGGGAGGTTCATTGTTTCCCCATCAGCTTGAAGCACTCAATTGGTTGCGGAAGTGCTGGCATAAATCAAGAAATGTGATACTAGCTGATGAGATGGGGCTTGGTAAAACCATATCAGCTTGTGCTTTTATTTCATCATTATATTTTGAGTTCAAAGCCACTCTACCTTGTTTAGTCTTGGTTCCACTTTCCACAATGCCTAATTGGCTTGCTGAGTTTTCATTATGGGCCCCTGAATTGAATGTTGTGGAATACCATGGGTGTGCCAAAGCAAGAGCCATGATTCGCCAGTATGAATGGCATGCTAGTGTTCCAAATGAGTTGAACAAGAAGACATCCGCTTATAAATTTAATGTTCTTTTAACTACATATGAAATGGTTCTGGCTGATTCCACACATCTTCGTGGGGTCCCTTGGGAAGTTCTCATAGTTGATGAGGGCCATCGATTGAAAAATTCAGGAAGTAGACTTTTCAGCTTGCTTAACTCGTTCTCTTTCCAACATCGTGTACTGTTGACTGGCACCCCTCTTCAGAATAACCTTGGTGAGATGTACAACTTGCTTAATTTCTTGCAGCCTGCATCATTCCCTTCCCTGTCTTCATTTGAGGAGAGGTTTAATGATCTTACAACTTCAGAAAAAGTGGAGGAATTGAAAAAACTCGTTGCTCCACATATGCTTCGTAGGCTTAAAAAGGATGCTATGCAGAATATTCCCCCAAAGACCGAACGAATGGTTCCTGTTGAGTTGTCCTCCATCCAAGCTGAATACTATCGTGCAATGTTAACAAAGAATTATCAGATATTGCGGAATATTGGGAAAGGGGTTGCACAACAATCGATGCTGAACATTGTAATGCAGTTAAGGAAAGTCTGCAATCATCCATATCTGATACCAGGCACTGAGCCTGACTGTGGGTCTGTAGAGTTCCTTCATGACATGCGGATAAAAGCTTCAGCCAAGTTGACACTGTTGCATTCTATGCTTAAGATTTTGCACAAAGAGGGTCACAGAGTCCTTATCTTTTCCCAGATGACCAAGCTCCTTGATATCCTTGAGGATTATTTGGCCATCGAATTTGGACCTAAAACATATGAGAGAGTAGATGGATCTGTTGCAGTGGCTGATCGTCAATCTGCAATTGCACGTTTTAACCAAGACAGAAGTCGATTTGTCTTTTTGTTATCAACACGCTCTTGTGGCCTTGGGATCAATTTGGCAACTGCTGACACCGTCATTATTTATGATTCTGATTTCAACCCCCATGCTGATATTCAAGCTATGAATCGAGCACATCGAATCGGACAATCAAATAGACTTCTGGTTTATAGGCTTGTAGTTCGTGCTAGTGTTGAAGAGCGCATCTTGCAGCTTGCAAAGAAGAAACTTATGCTGGATCAGCTATTTGTGAATAAGTCAGAATCCCAAAAAGAAGTGGAAGATATTCTTAAGTGGGGGACAGAGGAACTTTTCAATGATTCTCCTGGCATGGATGGAAAAGATACAGGTGAAAATAATAGTAACAAAGATGAGGCAGTGCCAGATGTAGAGCATAAGCATAAGAAGAGGATTGGTAGCCTGGGAGATGTTTATGAAGATAAATGTACGGAAAACAGCAACAAGATTGTTTGGGATGAAACTGCGATTTTAAAGTTGCTTGACCGTGAAAATCTTCAATCTGGACTGACTGATAATGCGGAAGGAGATATGGAAAATGATATGCTTGGCTCTGTAAAGTCTATCGAATGGAATGAGGAGCCAATTGAAGAGCAGGGAGTTGAATCACCTCCTGGTGCAAGTGATGATATATGTGCTCAAAATACTGAAAGGAAAGAGGATAATGTGGTTAATGGTACAGAAGAAAATGAATGGGACAGACTCTTACGTCTTAGATGGGAGAAATATCAAAGTGAGGAGGAAGCAGCTCTTGGTCGTGGTAAGCGAATGCGGAAAGCTGTTTCTTACAGGGAAGCATATGCTGCACACCCAAGTGAAACATTAACTGAGAGTGGTGGTGTTGAAGATGAGCGTGAGCCCGAACCAGAGCCAGAGCGGGAGTACACACCCGCAGGACGAGCTCTAAAAGCAAAGTATGCTAAGCTCCGTGCTAGGCAAAAAGAACGTCTAGCTCAGAGGAATGAAATTGAAGAACCTCGTCCTAGTGAGGGACTGCCTGTTGAGTCACATCCTCAGTGTCCCATGAGTACTGCTGAAGATGTTGATCAAGCGACTGGGGATCAAGCGGCTGGATTAGTTCAATTTCTCAGTGAGAAGTCTTCAGTAATTGACTTGGAGGATAACAAATTAGATGCTTCTAAAGCCAAGACTGACTCTCCCTTAAGATTGGGCAAGCTATCAAAGCATAAAAGCAGTCGCCTCGATCTCTCTGTTAATCCGCTTGACTACACGTCTCCTGACATTTTATTTCCTAGACACCAACATCAGGGAACAAGCATGACTCATTCGATGCCCCCAAATAATTTGTTACCTGTTCTGGGACTGTGTGCCCCAAATGCTAGTCAAATAGAATCATCAAAAAAGAACTCAAGGTCGAATGGCAGACGGAGAGGAGCTGGACCAGAATTTCCATTTAGTCTAGCTCCTCATTCTGGGACCTTGCCTGAAACAGAAGCAAATGGTGATGAAGCAAAGCTATCAGATGCATCCGCAGAGGCATCACAGCGTTTGAAGAGTAGCATCCCAAATGGTGGCTTGCCATTTAGACCGTATCCTCCGGCTTTTCAAGGAAAAGGTTATGATCGCCCTGAAAGTTCTGGTGCCACCTTTTCTGATTTCCAAGAAAAGATGGCACTGCCCAACTTACCATTTGATGAGAAATTGCTATCAAGATTCCCGCTTTCATCTAAGAACATGCAAAGTCCACATCTTGACTTCTTACCTAACTTGTCCTTGGGTAGCAGACTCGAAACTGTTAATGGCTCCTTGCAAGAGCTTCCAACAATGCCACTGTTTCCCAATTTAAAATTGCCTCCACAAGATGCGCCCAGATATAATCAGCTAGACAGAGAAGTCCATCCCACCTTGGGTTTGGGCCATATGCCAACTACATTTCCTTCATTATCTGATAACCACAGAAAGGTGCTGGAAAACATAATGATGAGGACTGGTTCTGCATCAAACAACTTGTTTAAGAGGAAATCAAAAGCAGATAGCTGGTCGGAAGATGAACTTGATTTCCTCTGGGTTGGTGTCCGTAGGCATGGAAGGGGCAATTGGGATGCAATGCTAAGAGACCCAAGGTTGAAATTCTCAAAGTTCAAAACTTCAGAAGATTTGTCAGCAAGGTGGGAGGAGGAGCAACTCAAGCTTTTAGAAGGATCAGCTTTTCCAGTGTCAAAATCATCCAGAAAGACTCCCAAGTCCTCGCAGTTTCCAAGCATATCTGATGGAATGATGGCCAGGGCACTGCATGGAAGTAGACTTGTTACACCTCCAAAGTTTCAATCCCATTTGACGGACATGAAGTTGGGTTTTACTGATCTTACATCTGGCTTTCCACATTTTGAAGCATCAGATAGACTTGGTTTGCAAAATGAGCAATGCCCTCCTATTCCAACTTGGTTTCATGACAAATTCCGGGGGAATTTTGCCAGAGAATCTGCTGCTGGACCTTCAGACAGACCAGGGACATCTTCCAATGTTTCCATGGAGCAGCCATTTGTTGTCACTTCTTTTGGAAGCAGTTGCTTGGGTTCATTAGGTTTGAATCCCCCAAGCAGCTATGATTTGCAGCAGAAGGAAAATGAACAGGGTCCCTATAACTATGGGAAGTTGCCTAGTCTTCTGGATAAATCACTGAATGCTCTGCGTGATATGAATAATAATTTTGCAAGAGGTGAACCCAGTGCAGGATTCTTTCCTGATCCCAGGAGAGGTTTTTTAAAGGGTGAAGATGTTGCTGGAAGTAGTTCATCAAAGGACAAGCTACCTCATTGGCTACGGCAAGCTGTAAGTGCTCCTGCCAAACCCCCAGAACCTGACCTTCCCCCTACGGTATCGGCAATAGCTCGGTCAGTTCGATTGTTATATAGGGAGGAAGAGCCAACCATTCCTCCCTTTGTGATTCCAGGCCCACCTCCTCCACTACCAAAGGATCCAAGACGACGGCTGAAGAAGAAAAGGAAACAGAAGTTACATATCTTTAGGCGAATTTCCCAAGACATTGCCGGAAGCAGCCACTTAAGTGAAAATGCTTCAAGCTCCATTCCTGTGGCCCCATCATTTCCCTTGCTTTCACAATCAATGGCACCACCTCCAGGCTTTCCACCAATGGAATCTGACCTCAATATGCCTCGGAGTTTAAATATGTTAAACCCATTAGCCTCGTTGCCACATCTGAATCAACAGATCAAAACAACCATGGGGCTGTCTCCTTCCCCTGAAGTGCTTCAACTGGTAGCATCCTGTGTTGCTCCAGGTCCACATCTACCAGCAGTTTCTGGCATGACAAGCTCAAGTGTCCCTGACTTGAAGCCATCATTGCCAGATTCAGCTGGCCAAGTAGGACTCTTGGACTCGCAAGCTACATTGGCAAAAGATGAGGCTAAGCCGGGTTCACCTCTTAAGGAGTGCAATTCACTCCCTAAAGATAGAAAATGTGATACTGAAAGTGGGGATTCCAGCAAGACTCAGTCAGATCCCAATAGAACTGAGCGTCCCGATGCTGAGGAAGTATCTTCTGAGGGCACCGTCTCAGATCACCCTCTGAGTGACCGGGATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006323 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007289 GO:0007399 GO:0007417 GO:0007420 GO:0008150 GO:0008152 GO:0008213 GO:0008285 GO:0009506 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0016581 GO:0016604 GO:0016607 GO:0017053 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019953 GO:0021895 GO:0021953 GO:0022008 GO:0022412 GO:0022414 GO:0023051 GO:0023056 GO:0030054 GO:0030154 GO:0030182 GO:0030900 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034728 GO:0034968 GO:0035064 GO:0035092 GO:0035093 GO:0036211 GO:0042127 GO:0042393 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043486 GO:0043543 GO:0043933 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0045165 GO:0048232 GO:0048468 GO:0048513 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048609 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051704 GO:0055044 GO:0060255 GO:0060322 GO:0060850 GO:0061628 GO:0065007 GO:0070013 GO:0070603 GO:0070734 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0098532 GO:0140030 GO:0140034 GO:1901564 GO:1901796 GO:1901798 GO:1902494 GO:1902531 GO:1902533 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05165 ko05203 map05165 map05203
Pfam Domains
Protein Families
Chromo DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

2412

Amino Acids

266.55

Weight (kDa)

6.35

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 79 - 120 4.2e-09 PHD-finger
Chromo PF00385 743 - 792 1.5e-07 Chromo (CHRromatin Organisation MOdifier) domain
ResIII PF04851 836 - 1007 5.7e-10 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 839 - 1128 4.3e-79 SNF2-related domain
HDA2-3 PF11496 1076 - 1293 1.5e-11 Class II histone deacetylase complex subunits 2 and 3
Helicase_C PF00271 1152 - 1266 1.4e-22 Helicase conserved C-terminal domain
DUF1087 PF06465 1447 - 1488 2.4e-06 CHD subfamily II, DUF1087
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2201, 2838
AarI CACCTGC 2 cut(s) 1432, 2039
AasI GACNNNNNNGTC 3 cut(s) 4377, 5522, 5872
Acc36I ACCTGC 3 cut(s) 94, 1432, 2039
AccB1I GGYRCC 4 cut(s) 3014, 5270, 6760, 7199
AccB7I CCANNNNNTGG 2 cut(s) 2398, 5201
AccBSI CCGCTC 1 cut(s) 4546
AccI GTMKAC 2 cut(s) 2959, 5932
AccII CGCG 1 cut(s) 1054
AccIII TCCGGA 5 cut(s) 784, 814, 844, 874, 904
AclI AACGTT 1 cut(s) 2396
AcoI YGGCCR 3 cut(s) 3561, 5910, 7009
AfaI GTAC 8 cut(s) 28, 1712, 3003, 3047, 4099, 4348, 4553, 4699
AflII CTTAAG 6 cut(s) 320, 3479, 3941, 4831, 6694, 7076
AflIII ACRYGT 1 cut(s) 4899
AhdI GACNNNNNGTC 2 cut(s) 3409, 4900
AjiI CACGTC 1 cut(s) 4902
AjuI GAANNNNNNNTTGG 4 cut(s) 4404, 4436, 5710, 5742
AleI CACNNNNGTG 2 cut(s) 4482, 6696
AloI GAACNNNNNNTCC 6 cut(s) 1452, 1484, 5673, 5705, 7153, 7185
Alw21I GWGCWC 6 cut(s) 728, 2391, 3787, 4309, 4573, 6472
Alw26I GTCTC 7 cut(s) 761, 2057, 2109, 4908, 5739, 6888, 7210
AlwNI CAGNNNCTG 7 cut(s) 45, 1525, 1991, 3395, 3617, 6491, 6953
Aor13HI TCCGGA 5 cut(s) 784, 814, 844, 874, 904
AoxI GGCC 9 cut(s) 2721, 2932, 3561, 3694, 5545, 5910, 6583, 6726, 7009
ApaI GGGCCC 1 cut(s) 2725
ArsI GACNNNNNNTTYG 2 cut(s) 4600, 4632
AseI ATTAAT 1 cut(s) 1406
Asp700I GAANNNNTTC 7 cut(s) 575, 1923, 2871, 3936, 4164, 6421, 6900
AspLEI GCGC 4 cut(s) 1146, 1945, 3855, 5497
AsuC2I CCSGG 3 cut(s) 6092, 7065, 7229
AxyI CCTNAGG 2 cut(s) 936, 966
BaeGI GKGCMC 5 cut(s) 353, 2725, 5002, 5920, 7202
BalI TGGCCA 3 cut(s) 3563, 5912, 7011
BamHI GGATCC 2 cut(s) 1786, 6607
BanI GGYRCC 4 cut(s) 3014, 5270, 6760, 7199
BanII GRGCYC 5 cut(s) 728, 2031, 2725, 4530, 4573
BarI GAAGNNNNNNTAC 2 cut(s) 3408, 3440
BbsI GAAGAC 6 cut(s) 114, 146, 2831, 3084, 4761, 6287
Bbv12I GWGCWC 6 cut(s) 728, 2391, 3787, 4309, 4573, 6472
BbvCI CCTCAGC 1 cut(s) 7179
BceAI ACGGC 4 cut(s) 179, 899, 6470, 6635
BcgI CGANNNNNNTGC 4 cut(s) 3312, 3346, 4852, 4886
BciVI GTATCC 1 cut(s) 5232
BclI TGATCA 2 cut(s) 1804, 4714
BcnI CCSGG 3 cut(s) 6092, 7065, 7229
BcoDI GTCTC 7 cut(s) 761, 2057, 2109, 4908, 5739, 6888, 7210
BfmI CTRYAG 4 cut(s) 1439, 1791, 1872, 3414
BfrI CTTAAG 6 cut(s) 320, 3479, 3941, 4831, 6694, 7076
BfuAI ACCTGC 3 cut(s) 94, 1432, 2039
BfuI GTATCC 1 cut(s) 5232
BglI GCCNNNNNGGC 1 cut(s) 2698
BglII AGATCT 1 cut(s) 680
BlpI GCTNAGC 2 cut(s) 4590, 7059
BmcAI AGTACT 1 cut(s) 4699
BmeRI GACNNNNNGTC 2 cut(s) 3409, 4900
BmgBI CACGTC 1 cut(s) 4902
BmrI ACTGGG 4 cut(s) 55, 606, 4734, 6351
BmuI ACTGGG 4 cut(s) 55, 606, 4734, 6351
BoxI GACNNNNGTC 2 cut(s) 196, 3657
BpiI GAAGAC 6 cut(s) 114, 146, 2831, 3084, 4761, 6287
BplI GAGNNNNNCTC 4 cut(s) 2338, 2370, 3230, 3262
BpmI CTGGAG 8 cut(s) 284, 825, 855, 885, 915, 945, 6753, 6912
Bpu10I CCTNAGC 1 cut(s) 7179
Bpu1102I GCTNAGC 2 cut(s) 4590, 7059
BpuEI CTTGAG 6 cut(s) 117, 1195, 3569, 5023, 5801, 6952
BpuMI CCSGG 3 cut(s) 6092, 7065, 7229
Bsa29I ATCGAT 2 cut(s) 2938, 3332
BsaBI GATNNNNATC 2 cut(s) 1809, 4713
BsaI GGTCTC 1 cut(s) 5739
BsaWI WCCGGW 5 cut(s) 784, 814, 844, 874, 904
BsaXI ACNNNNNCTCC 4 cut(s) 4810, 4840, 6550, 6580
Bse21I CCTNAGG 2 cut(s) 936, 966
Bse3DI GCAATG 5 cut(s) 3279, 5742, 6059, 6675, 6992
Bse8I GATNNNNATC 2 cut(s) 1809, 4713
BseAI TCCGGA 5 cut(s) 784, 814, 844, 874, 904
BseCI ATCGAT 2 cut(s) 2938, 3332
BseJI GATNNNNATC 2 cut(s) 1809, 4713
BseMI GCAATG 5 cut(s) 3279, 5742, 6059, 6675, 6992
BseRI GAGGAG 9 cut(s) 2228, 3116, 4262, 4421, 5076, 5085, 5819, 5822, 6582
BseSI GKGCMC 5 cut(s) 353, 2725, 5002, 5920, 7202
BseYI CCCAGC 1 cut(s) 2121
BsgI GTGCAG 3 cut(s) 2067, 4458, 6381
Bsh1236I CGCG 1 cut(s) 1054
BshFI GGCC 9 cut(s) 2723, 2934, 3563, 3696, 5547, 5912, 6585, 6728, 7011
BshNI GGYRCC 4 cut(s) 3014, 5270, 6760, 7199
BshVI ATCGAT 2 cut(s) 2938, 3332
BsiHKAI GWGCWC 6 cut(s) 728, 2391, 3787, 4309, 4573, 6472
BsmAI GTCTC 7 cut(s) 761, 2057, 2109, 4908, 5739, 6888, 7210
BsmBI CGTCTC 3 cut(s) 2057, 4908, 7210
BsmI GAATGC 4 cut(s) 2318, 3469, 4443, 6319
BsnI GGCC 9 cut(s) 2723, 2934, 3563, 3696, 5547, 5912, 6585, 6728, 7011
Bso31I GGTCTC 1 cut(s) 5739
Bsp120I GGGCCC 1 cut(s) 2721
Bsp13I TCCGGA 5 cut(s) 784, 814, 844, 874, 904
Bsp1407I TGTACA 2 cut(s) 1710, 3045
Bsp1720I GCTNAGC 2 cut(s) 4590, 7059
Bsp19I CCATGG 5 cut(s) 1264, 1752, 2749, 6159, 6873
BspANI GGCC 9 cut(s) 2723, 2934, 3563, 3696, 5547, 5912, 6585, 6728, 7011
BspDI ATCGAT 2 cut(s) 2938, 3332
BspEI TCCGGA 5 cut(s) 784, 814, 844, 874, 904
BspFNI CGCG 1 cut(s) 1054
BspHI TCATGA 2 cut(s) 3427, 6079
BspMAI CTGCAG 3 cut(s) 1443, 1795, 1876
BspMI ACCTGC 3 cut(s) 94, 1432, 2039
BspQI GCTCTTC 4 cut(s) 2019, 3843, 4254, 6546
BspT107I GGYRCC 4 cut(s) 3014, 5270, 6760, 7199
BspTI CTTAAG 6 cut(s) 320, 3479, 3941, 4831, 6694, 7076
BspTNI GGTCTC 1 cut(s) 5739
BsrBI CCGCTC 1 cut(s) 4546
BsrDI GCAATG 5 cut(s) 3279, 5742, 6059, 6675, 6992
BsrGI TGTACA 2 cut(s) 1710, 3045
BstAFI CTTAAG 6 cut(s) 320, 3479, 3941, 4831, 6694, 7076
BstAPI GCANNNNNTGC 3 cut(s) 3475, 4472, 4586
BstAUI TGTACA 2 cut(s) 1710, 3045
BstDSI CCRYGG 6 cut(s) 1264, 1752, 2251, 2749, 6159, 6873
BstENI CCTNNNNNAGG 1 cut(s) 1343
BstFNI CGCG 1 cut(s) 1054
BstHHI GCGC 4 cut(s) 1146, 1945, 3855, 5497
BstMAI GTCTC 7 cut(s) 761, 2057, 2109, 4908, 5739, 6888, 7210
BstNSI RCATGY 5 cut(s) 1709, 1949, 2798, 3436, 5368
BstPAI GACNNNNGTC 2 cut(s) 196, 3657
BstSFI CTRYAG 4 cut(s) 1439, 1791, 1872, 3414
BstSLI GKGCMC 5 cut(s) 353, 2725, 5002, 5920, 7202
BstUI CGCG 1 cut(s) 1054
BstV2I GAAGAC 6 cut(s) 114, 146, 2831, 3084, 4761, 6287
BstX2I RGATCY 6 cut(s) 680, 1193, 1786, 3602, 6607, 7150
BstXI CCANNNNNNTGG 2 cut(s) 1783, 6724
BstYI RGATCY 6 cut(s) 680, 1193, 1786, 3602, 6607, 7150
Bsu15I ATCGAT 2 cut(s) 2938, 3332
Bsu36I CCTNAGG 2 cut(s) 936, 966
BsuI GTATCC 1 cut(s) 5232
BsuRI GGCC 9 cut(s) 2723, 2934, 3563, 3696, 5547, 5912, 6585, 6728, 7011
BsuTUI ATCGAT 2 cut(s) 2938, 3332
BtgI CCRYGG 6 cut(s) 1264, 1752, 2251, 2749, 6159, 6873
BtgZI GCGATG 1 cut(s) 684
BtrI CACGTC 1 cut(s) 4902
BtsI GCAGTG 5 cut(s) 353, 3618, 4035, 5303, 5918
BveI ACCTGC 3 cut(s) 94, 1432, 2039
CaiI CAGNNNCTG 7 cut(s) 45, 1525, 1991, 3395, 3617, 6491, 6953
CciI TCATGA 2 cut(s) 3427, 6079
CfoI GCGC 4 cut(s) 1146, 1945, 3855, 5497
ClaI ATCGAT 2 cut(s) 2938, 3332
CseI GACGC 1 cut(s) 7157
Csp6I GTAC 8 cut(s) 27, 1711, 3002, 3046, 4098, 4347, 4552, 4698
CviQI GTAC 8 cut(s) 27, 1711, 3002, 3046, 4098, 4347, 4552, 4698
DraI TTTAAA 7 cut(s) 390, 1830, 2260, 4143, 5475, 6396, 6816
DrdI GACNNNNNNGTC 3 cut(s) 4377, 5522, 5872
DriI GACNNNNNGTC 2 cut(s) 3409, 4900
DseDI GACNNNNNNGTC 3 cut(s) 4377, 5522, 5872
EaeI YGGCCR 3 cut(s) 3561, 5910, 7009
Eam1105I GACNNNNNGTC 2 cut(s) 3409, 4900
Ecl136II GAGCTC 2 cut(s) 726, 4571
Eco24I GRGCYC 5 cut(s) 728, 2031, 2725, 4530, 4573
Eco31I GGTCTC 1 cut(s) 5739
Eco32I GATATC 2 cut(s) 2002, 3544
Eco53kI GAGCTC 2 cut(s) 726, 4571
Eco81I CCTNAGG 2 cut(s) 936, 966
EcoICRI GAGCTC 2 cut(s) 726, 4571
EcoNI CCTNNNNNAGG 1 cut(s) 1343
EcoO109I RGGNCCY 6 cut(s) 1336, 1522, 2722, 2902, 5106, 6266
EcoRV GATATC 2 cut(s) 2002, 3544
EcoT22I ATGCAT 2 cut(s) 1048, 5158
EcoT38I GRGCYC 5 cut(s) 728, 2031, 2725, 4530, 4573
Esp3I CGTCTC 3 cut(s) 2057, 4908, 7210
FalI AAGNNNNNCTT 6 cut(s) 3924, 3956, 4404, 4436, 5667, 5699
FauI CCCGC 4 cut(s) 2229, 4539, 4567, 5355
FauNDI CATATG 5 cut(s) 2863, 3168, 3586, 4468, 5550
FbaI TGATCA 2 cut(s) 1804, 4714
FblI GTMKAC 2 cut(s) 2959, 5932
FriOI GRGCYC 5 cut(s) 728, 2031, 2725, 4530, 4573
GlaI GCGC 4 cut(s) 1145, 1944, 3854, 5496
GsaI CCCAGC 1 cut(s) 2125
GsuI CTGGAG 8 cut(s) 284, 825, 855, 885, 915, 945, 6753, 6912
HaeIII GGCC 9 cut(s) 2723, 2934, 3563, 3696, 5547, 5912, 6585, 6728, 7011
HgaI GACGC 1 cut(s) 7157
HhaI GCGC 4 cut(s) 1146, 1945, 3855, 5497
Hin6I GCGC 4 cut(s) 1144, 1943, 3853, 5495
HinP1I GCGC 4 cut(s) 1144, 1943, 3853, 5495
HincII GTYRAC 4 cut(s) 21, 3009, 3279, 3459
HindII GTYRAC 4 cut(s) 21, 3009, 3279, 3459
HindIII AAGCTT 4 cut(s) 71, 2277, 3444, 5819
HpaI GTTAAC 1 cut(s) 3279
Hpy99I CGWCG 2 cut(s) 165, 6621
HpyCH4IV ACGT 7 cut(s) 64, 2044, 2396, 3640, 4378, 4615, 4901
HpySE526I ACGT 7 cut(s) 64, 2044, 2396, 3640, 4378, 4615, 4901
HspAI GCGC 4 cut(s) 1144, 1943, 3853, 5495
KflI GGGWCCC 2 cut(s) 2902, 6266
Kpn2I TCCGGA 5 cut(s) 784, 814, 844, 874, 904
Ksp22I TGATCA 2 cut(s) 1804, 4714
KspAI GTTAAC 1 cut(s) 3279
LguI GCTCTTC 4 cut(s) 2019, 3843, 4254, 6546
MaeII ACGT 7 cut(s) 64, 2044, 2396, 3640, 4378, 4615, 4901
MbiI CCGCTC 1 cut(s) 4546
MfeI CAATTG 4 cut(s) 2533, 3633, 4254, 5725
MflI RGATCY 6 cut(s) 680, 1193, 1786, 3602, 6607, 7150
MlsI TGGCCA 3 cut(s) 3563, 5912, 7011
MluNI TGGCCA 3 cut(s) 3563, 5912, 7011
MmeI TCCRAC 5 cut(s) 1764, 3016, 5474, 5652, 6092
Mox20I TGGCCA 3 cut(s) 3563, 5912, 7011
Mph1103I ATGCAT 2 cut(s) 1048, 5158
MroI TCCGGA 5 cut(s) 784, 814, 844, 874, 904
MroXI GAANNNNTTC 7 cut(s) 575, 1923, 2871, 3936, 4164, 6421, 6900
MscI TGGCCA 3 cut(s) 3563, 5912, 7011
MslI CAYNNNNRTG 8 cut(s) 2754, 2799, 2895, 3347, 4482, 5609, 6696, 6722
Msp20I TGGCCA 3 cut(s) 3563, 5912, 7011
MspA1I CMGCKG 7 cut(s) 626, 794, 824, 854, 884, 2236, 7007
MspCI CTTAAG 6 cut(s) 320, 3479, 3941, 4831, 6694, 7076
MunI CAATTG 4 cut(s) 2533, 3633, 4254, 5725
Mva1269I GAATGC 4 cut(s) 2318, 3469, 4443, 6319
MvnI CGCG 1 cut(s) 1054
NciI CCSGG 3 cut(s) 6092, 7065, 7229
NcoI CCATGG 5 cut(s) 1264, 1752, 2749, 6159, 6873
NdeI CATATG 5 cut(s) 2863, 3168, 3586, 4468, 5550
NsiI ATGCAT 2 cut(s) 1048, 5158
NspI RCATGY 5 cut(s) 1709, 1949, 2798, 3436, 5368
OliI CACNNNNGTG 2 cut(s) 4482, 6696
PaeI GCATGC 1 cut(s) 2798
PagI TCATGA 2 cut(s) 3427, 6079
PaqCI CACCTGC 2 cut(s) 1432, 2039
PasI CCCWGGG 1 cut(s) 1217
PciSI GCTCTTC 4 cut(s) 2019, 3843, 4254, 6546
PcsI WCGNNNNNNNCGW 4 cut(s) 1815, 3787, 4432, 6529
PctI GAATGC 4 cut(s) 2318, 3469, 4443, 6319
PdmI GAANNNNTTC 7 cut(s) 575, 1923, 2871, 3936, 4164, 6421, 6900
PflFI GACNNNGTC 2 cut(s) 3725, 7144
PflMI CCANNNNNTGG 2 cut(s) 2398, 5201
PpuMI RGGWCCY 5 cut(s) 1336, 1522, 2902, 5106, 6266
PshAI GACNNNNGTC 2 cut(s) 196, 3657
PshBI ATTAAT 1 cut(s) 1406
PsiI TTATAA 2 cut(s) 2201, 2838
Psp124BI GAGCTC 2 cut(s) 728, 4573
Psp1406I AACGTT 1 cut(s) 2396
Psp5II RGGWCCY 5 cut(s) 1336, 1522, 2902, 5106, 6266
PspFI CCCAGC 1 cut(s) 2121
PspOMI GGGCCC 1 cut(s) 2721
PspPPI RGGWCCY 5 cut(s) 1336, 1522, 2902, 5106, 6266
PstI CTGCAG 3 cut(s) 1443, 1795, 1876
PstNI CAGNNNCTG 7 cut(s) 45, 1525, 1991, 3395, 3617, 6491, 6953
PsuI RGATCY 6 cut(s) 680, 1193, 1786, 3602, 6607, 7150
PsyI GACNNNGTC 2 cut(s) 3725, 7144
PvuII CAGCTG 6 cut(s) 626, 794, 824, 854, 884, 7007
RsaI GTAC 8 cut(s) 28, 1712, 3003, 3047, 4099, 4348, 4553, 4699
RsaNI GTAC 8 cut(s) 27, 1711, 3002, 3046, 4098, 4347, 4552, 4698
RseI CAYNNNNRTG 8 cut(s) 2754, 2799, 2895, 3347, 4482, 5609, 6696, 6722
SacI GAGCTC 2 cut(s) 728, 4573
SapI GCTCTTC 4 cut(s) 2019, 3843, 4254, 6546
SbfI CCTGCAGG 2 cut(s) 1443, 1795
ScaI AGTACT 1 cut(s) 4699
SdaI CCTGCAGG 2 cut(s) 1443, 1795
SfcI CTRYAG 4 cut(s) 1439, 1791, 1872, 3414
SmiMI CAYNNNNRTG 8 cut(s) 2754, 2799, 2895, 3347, 4482, 5609, 6696, 6722
SphI GCATGC 1 cut(s) 2798
Sse8387I CCTGCAGG 2 cut(s) 1443, 1795
SspI AATATT 3 cut(s) 1882, 3205, 3307
SstI GAGCTC 2 cut(s) 728, 4573
TaiI ACGT 7 cut(s) 67, 2047, 2399, 3643, 4381, 4618, 4904
TaqII GACCGA 2 cut(s) 3233, 6513
TatI WGTACW 6 cut(s) 26, 1710, 3001, 3045, 4551, 4697
TauI GCSGC 3 cut(s) 1517, 1616, 4739
TspGWI ACGGA 7 cut(s) 964, 2240, 4115, 4586, 5071, 5696, 5984
Tth111I GACNNNGTC 2 cut(s) 3725, 7144
Van91I CCANNNNNTGG 2 cut(s) 2398, 5201
Vha464I CTTAAG 6 cut(s) 320, 3479, 3941, 4831, 6694, 7076
VspI ATTAAT 1 cut(s) 1406
XagI CCTNNNNNAGG 1 cut(s) 1343
XceI RCATGY 5 cut(s) 1709, 1949, 2798, 3436, 5368
XcmI CCANNNNNNNNNTGG 2 cut(s) 5539, 6157
XmiI GTMKAC 2 cut(s) 2959, 5932
XmnI GAANNNNTTC 7 cut(s) 575, 1923, 2871, 3936, 4164, 6421, 6900
ZrmI AGTACT 1 cut(s) 4699
Zsp2I ATGCAT 2 cut(s) 1048, 5158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.