Rh5AG151300

DUF1087

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0005784
Physical Location & Seq
Forward (+)
15845910 .. 15860101
14192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG151300.1

Sequence Viewer

Length: 7215 bp
ATGAAGGATAACAGCTCGTCAACAAGTACAATGATTAACAGAAACTGGGTGTTGAAACGAAAACGTAGAAAGCTTCCTTATGGACCTGCTCTATCTAATGGCAAAGAAGACAGTTCAGCAGCATCAGAATCTCAAGGGAAGACATCTTCTTCCGCTAAACGACGGCTGACTAATGAAATTATTACTGATCGACTTTCGTCCAAGAAGAAAGGAAACGATGGGTATTACTATGAATGTGTGGTCTGTGACCTCGGTGGTAACTTGTTGTGTTGTGATAGTTGTCCCCAAACCTATCATCTCCAGTGTCTTAATCCACCTCTTAAGCGGATTCCGAATGGGAAGTGGCAGTGCCCAAACTGCTGTCAGAAAAGTGACGTGCCAGAGCCTTTAAATTATCTAGCTGATAACATTTCAAAACGAGCAAGGACAAAGATTGCCACCTCTAAGTCCAAAGCTGAAGTTAAGTCATCTGACAGAGAGAAAGTTTCGCAGATTTTTGGGAACACCATTGTTGCAAAGAAAAGATCATCAAGCAAAGGGAAAGCTCATCGAGTTAAATCCTTCGAAAAGAAACCATTCTCCCAGATAGATATATCTTCTAGCACGAAGCCCAGTCATTCATCAGCTGGCTGTTCTGTGGAGGGTATTTCCTTGTCTGAGAATGTTGGCGATGAAAATAGATCTAATCTTTCTCCACCAGGTGAATCCGCAGACAAAAAGTTGAGCTCTCCAGCTAAAGAGGTTTCATCTCATTCTAAAATATCAGAGACAAATGAAGAAGCTCCGGAGGCAGCTGTGACAACTGGAGAAGCTCCGGAGGCAGCTGTGACAACTGGAGAAGCTCCGGAGGCAGCTGTGACAACTGGAGAAGCTCCGGAGGCAGCTGTGACAACTGGAGAAGCTCCTGAGGCATCTGTGCCAAATGGAGAAGCTCCTGATGCATCTGTGACAAATGGAGAAGCTCCTGAGGCATCTGTCCTTCCTGAAGTGAAGCCTGACCCGTCTTGTGATGATGCATCTCCGCGTAAGACCATTGTTCTTGCCATCAGTGCTGCTGCTGGCAAGGCTAGAAAAAGAAAACACAAAGGCAATAATGAGAAGAGTAAAAAGAAGCGCAGGACAGAGAAGAGGAAAACTGTCATTGGTGTTTCTAAACAGTCTGGATCTAAAGCAAATACCTCAAGCCCAGGGACTCGTATTCGTAAAACACTTCGTAAGCATAAATCTCTCAACCATGGGGTTTCTGCATCTTTGGCAAGGGAGGATGTCACAACCAAGGGTTCAGATGTCCAGATGAAAGACGAGGACCTTACTGAGGAAGCAAAAGACCAATTTCATAATGCAGATAAAGCCGGAAATCATGGAGTCGAAACATTAATGCAGAAGGATAGTCTTACTGCTGAACTCCTGCAGGTGGATCGGGTTTTGGGATGTCGAATTCAAGGTAATCATGCTGCTGCTTCTTGTCACTTATCAGTGACAGCTGCCCAGGACCTGAGTTCTGATGATGCACAAGTCTCAGAAAATAATAACAGACTATCACAGGAAAATTTTGCTTGCGAAACTGCTATGGATGTTGGGGGGGCTAAAAATCTCACTGAGGGTTGTCAAGGAGTTGTTAAGGGTGTTGATGGGGATGATGGGGATGACAGCAAGAAGGAGGATATAAGAGTGGACAAACTGCATGTGTACAGAAGGTCTATGAACAAAGAAGGTAAAAGAGCTAATTCCATGGATTTGTCTAGGAAAGATACCAAGGAGTTGGATCCTGCAGGCATAATTGATCACGATCCAAACGAATCTGCTTTAAATGCTGATGATCCAGAAAAAACAAATGAAGAAGTAGTGACTCCGGAGAATATTGATGTCAATTTGAACAGTCATGATAAAGATAAAGAAGAGGTTCTGGAAATTTGTGAATCGCATGTTTCTGCTGATACCAATGACAAGAGAGATGTCAATACAGAAGCTGGAACTGATATCTGTGCTGAAAACAAAAGTGAAGGGCCCACACTGGCTGAACGTGCAGGTGATGGTGTTGAGACGTTATCTTATGAATTTTTAGTTAAGTGGGTAGGTAAGTCTCATATTCATAATAGCTGGGTTTCTGAATCTGAGTTAAAAGTCCTGGCAAAGAGGAAACTAGAAAACTATAAGGCAAAGTATGGAATGGCTGTTATAAATATATGCGAGGAGAAATGGAAGCAACCACAGCGGGTGATCGCTCTCCGTGGATTTAAAGATGGTTCAGGTGAAGCTTTTGTGAAATGGACTGGTTTGCCTTATGATGAATGCACTTGGGAAAGATTGGATGAACCTGTTATGAGAAATTCTCAGAATCTGGTTGAATTATTTAGTCAGTTTGAGCACCAAACGTTGGTAAATGATGCTCTTAAAGATGATTCATCAAGAGGGAAGGTTAGCCGACAGCAAAATGAAATACTTGCTCTGACAGAGCAGCCCAAGGAACTAAAGGGGGGTTCATTGTTTCCCCATCAGCTTGAAGCACTCAATTGGTTGCGGAAGTGCTGGCATAAATCAAGAAATGTGATACTAGCTGATGAGATGGGCCTTGGTAAAACCATATCAGCTTGTGCTTTTATTTCATCATTATATTGTGAGTTCAAAGCCACTCTACCTTGTTTAGTCTTGGTTCCACTTTCCACAATGCCTAATTGGCTTGCTGAGTTTTCATTATGGGCCCCTGAATTGAATGTCGTGGAATACCATGGGTGTGCCAAAGCAAGAGCCATGATTCGCCAGTATGAATGGCATGCTAGTGTTCCAAATGAGTTGAACAAGAAGACATCCGCTTATAAATTTAATGTTCTTTTAACTACATATGAAATGGTTCTTGCTGATTCCACACATCTTCGTGGGGTCCCTTGGGAAGTTCTCATAGTTGATGAGGGCCATCGATTGAAAAATTCAGGAAGTAGACTTTTCAGCTTGCTTAACTCGTTCTCTTTCCAACATCGTGTACTGTTGACTGGCACCCCTCTTCAGAATAATCTTGGTGAGATGTACAACTTGCTTAATTTCTTGCAGCCTGCATCATTCCCTTCCCTGTCTTCATTTGAGGAGAGGTTTAATGATCTTACAACTTCAGAAAAAGTGGAGGAATTGAAAAAACTCGTTGCTCCACATATGCTTCGTAGGCTTAAAAAGGATGCTATGCAGAATATTCCCCCAAAGACCGAACGAATGGTTCCTGTTGAGTTGTCCTCCATCCAAGCTGAATACTATCGTGCAATGTTAACAAAGAATTATCAGATATTGCGGAATATTGGGAAAGGGGTTGCACAACAATCGATGCTGAACATTGTAATGCAGTTAAGGAAAGTCTGCAATCATCCATATCTGATACCAGGCACTGAGCCTGACTGTGGGTCTGTAGAGTTCCTTCATGACATGCGGATAAAAGCTTCAGCCAAGTTGACACTGTTGCATTCTATGCTTAAGATTTTGCACAAAGAGGGTCACAGAGTCCTTATCTTTTCCCAGATGACCAAGCTCCTTGATATCCTTGAGGATTATTTGGCCATCGAATTTGGACCTAAAACATATGAGAGAGTAGATGGATCTGTTGCAGTGGCTGATCGTCAATCTGCAATTGCGCGTTTTAACCAAGACAGAAGTCGATTTGTCTTTTTGTTATCAACACGCTCTTGTGGCCTTGGGATCAATTTGGCAACTGCTGACACCGTCATTATTTATGATTCTGATTTCAACCCCCATGCTGATATTCAAGCTATGAATCGAGCACATCGAATCGGACAATCAAATAGACTTCTGGTTTATAGGCTTGTAGTTCGTGCTAGTGTTGAAGAGCGCATCTTGCAGCTTGCAAAGAAGAAGCTTATGCTGGATCAGCTATTTGTGAATAAGTCAGAATCCCAAAAAGAAGTGGAAGATATTCTTAAGTGGGGAACAGAGGAACTTTTCAATGATTCTCCTGGCATGGATGGAAAAGATACAGGTGAAAATAATAGTAACAAAGATGAGGCAGTGCCAGATGTAGAGCATAAGCATAAGAAGAGGATTGGTAGCCTGGGAGATGTTTATGAAGATAAATGTACGGAAAACAGCAACAAGATTGTTTGGGATGAAACTGCGATTTTAAAGTTGCTTGACCGTGAAAATCTTCAATCTGGACTGACTGATAATGCGGAAGGAGATATGGAAAATGATATGCTTGGCTCTGTAAAGTCTATCGAATGGAATGAGGAGCCAATTGAAGAGCAGGGAGTTGAATCACCTCCTGGTGCAAGTGATGATATATGTGCTCAAAATACTGAAAGGAAAGAGGATAATGTGGTTAATGGTACAGAAGAAAATGAATGGGACAGACTCTTACGTCTTAGATGGGAGAAATATCAAAGTGAGGAGGAAGCAGCTCTTGGTCGTGGTAAGCGAATGCGGAAAGCTGTTTCTTACAGGGAAGCATATGCTGCACACCCAAGTGAAACATTAACTGAGAGTGGTGGTGTTGAAGATGAGCGTGAGCCCGAACCAGAGCCAGAGCGGGAGTACACACCCGCAGGACGAGCTCTAAAAGCAAAGTATGCTAAGCTCCGTGCTAGGCAAAAAGAACGTCTAGCTCAGAGGAATGAAATTGAAGAACCTCGTCCTAGTGAGGGACTGCCTGTTGAGTCACATCCTCAGTGTCCCATGAACACTGCCGAAGATGTTGATCAAGCGGCTGGATTAGTTCAATTTCTCAGTGAGAAGTCTTCAGTAATTGACTTGGAGGATAACAAATTAGATGCTTCTAAAGCCAAGACTGACTCTCCCTTAAGATTGAGCAAGCTATCAAAGCATAAAAGCAGTCGCCTCGATCTCTCTGTTAATCCGCTTGACTACGCGTCTCCTGACATTTTATTTCCTAGACACCAACATCAGGGAACAAGCATGACTCATTCGATGCCCCCAAATAATTTGTTACCTGTTCTGGGGCTGTGTGCCCCAAATGCTAGTCAAATAGAATCATCAAAAAAGAACTCAAGGTCGAATGGCAGACGGAGAGGAGCTGGACCAGAATTTCCATTTAGTCTAGCTCCTCATTCTGGGACCTTGCCTGAAACAGAAGCAAATGGTGATGAAGCAAAGCTATCAGATGCATCCGCAGAGGCATCACAGCGTTTGAAGAGTAGCATCCCAAATGGTGGCTTGCCATTTAGACCGTATCCTCCGGCTTTTCAAGGAAAAGGTTATGATCGCCCTGAAAGTTCTGGTGCCACCTTTTCTGATTTCCAAGAAAAGATGGCACTGCCCAACTTACCATTTGATGAGAAATTGCTATCAAGATTCCCGCTTTCATCTAAGAGCATGCAAAGTCCACATCTTGACTTCTTACCTAACTTGTCCTTGGGTAGCAGACTCGAAACTGTTAATGGCTCCTTGCAAGAGCTTCCAACAATGCCACTGTTTCCCAATTTAAAATTGCCTCCACAAGATGCGCCCAGATATAATCAGCTAGACAGAGAAGTCCATCCCACCTTGGGTTTGGGCCATATGCCAACTACATTTCCTTCATTATCTGATAACCACAGAAAGGTGCTGGAAAACATTATGATGAGGACTGGTTCTGCATCAAACAACTTGTTTAAGAGGAAATCAAAAGCAGATAGCTGGTCGGAAGATGAACTTGATTTCCTCTGGGTTGGTGTCCGTAGGCATGGAAGGGGCAATTGGGATGCAATGCTAAGAGACCCAAGGTTGAAATTCTCAAAGTTCAAAACTTCAGAAGATTTGTCAGCAAGGTGGGAGGAGGAGCAACTCAAGCTTTTAGAAGGGTCAGCTTTTCCAGTGTCAAAATCATCCAGAAAGACTCCCAAGTCCTCGCAGTTTCCAAGCATATCTGATGGAATGATGGCAAGGGCACTGCATGGAAGTAGACTCGTTACACCTCCAAAGTTTCAATCCCATTTGACAGACATGAAGTTGGGTTTTACTGATCTTACATCTGGCTTTCCACATTTTGAAGCATCAGATAGACTTGGTTTGCAAAATGAGCAATGCCCTCCTATTCCAACTTGGTTTCATGACAAATTCCGGGGGAATTTTGCCAGAGCATCTGCTGCTGGACCTTCAGACAGACCAGGGACATCTTCCAATGTTTCCATGGAGCAGCCATTTGTTGTCACTTCTTTTGGAAGCAGTTGCTTGGGTTCATTAGGTTTGAATCCCCCAAGCAGCTATGATTTGCAGCAGAAGGAAAATGAACAGGGTCCCTATAACTATGGGAAGTTGCCTAGTCTTCTGGATAGATCACTGAATGCTCTGCGTGATATGAATAATAATTTTGCAAGAGGTGAACCCAGTGCAGGATTCTTTCCTGATCCCAGGAGAGGTTTTTTAAAGGGTGAAGATGTTGCTGGAAGTAGTTCATCAAAGGACAAGCTACCTCATTGGCTACGGCAAGCTGTAAGTGCTCCTGCCAAACCCCCAGAACCTGACCTTCCCCCTACGGTATCGGCAATAGCTCGGTCAGTTCGATTGTTATATAGGGAGGAAGAGCCAACCATTCCTCCCTTTGTGATTCCAGGCCCACCTCCTCCACTACCAAAGGATCCAAGACGACGGCTGAAGAAGAAAAGGAAACAGAAGTTACATATCTTTAGGCGAATTTCCCAAGACATTGCCGGAAGCAGCCACTTAAGTGAAAATGCTTCAAGCTCCATTCCTGTGGCCCCATCATTTCCCTTGCTTTCACAATCAATGGCACCACCTCCAGGCTTTCCACCAATGGAATCTGACCTCAATATGCCTCGGAGTTTAAATATGTTAAACCCATTAGCCTCGTTGCCACATCTGAATCAACAGATCAAAACAACCATGGGGTTGTCTCCTTCCCCTGAAGTGCTTCAACTTGTAGCATCCTGTGTTGCTCCAGGACCACATCTACCAGCAGTTTCTGGCATGACAAGCTCAAGTGTCCCTGACTTGAAGCCATCATTGCCAGATTCAGCTGGCCAAGTAGGACTCTTGGACTCGCAAGCTACATTGGCAAAAGATGAGGCAAGAGATGAGGCTAAGCCGGGTTCACCTCTTAAGGAGTGCAATTCACTCCCTAAAGATAGAAAATGTGATACTGAAAGTGGGGATTCCAGCAAGACTCAGTCAGATCCCAATAGAACTGAGCGTCCCGATGCTGAGGAAGTATCTTCTGAGGGCACCGTCTCAGATCACCCCCTGAGTGACCGGGAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006323 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007289 GO:0007399 GO:0007417 GO:0007420 GO:0008150 GO:0008152 GO:0008213 GO:0008285 GO:0009506 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0016581 GO:0016604 GO:0016607 GO:0017053 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019953 GO:0021895 GO:0021953 GO:0022008 GO:0022412 GO:0022414 GO:0023051 GO:0023056 GO:0030054 GO:0030154 GO:0030182 GO:0030900 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034728 GO:0034968 GO:0035064 GO:0035092 GO:0035093 GO:0036211 GO:0042127 GO:0042393 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043486 GO:0043543 GO:0043933 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0045165 GO:0048232 GO:0048468 GO:0048513 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048609 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051704 GO:0055044 GO:0060255 GO:0060322 GO:0060850 GO:0061628 GO:0065007 GO:0070013 GO:0070603 GO:0070734 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0098532 GO:0140030 GO:0140034 GO:1901564 GO:1901796 GO:1901798 GO:1902494 GO:1902531 GO:1902533 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05165 ko05203 map05165 map05203
Pfam Domains
Protein Families
Chromo DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

2404

Amino Acids

265.86

Weight (kDa)

6.43

Isoelectric Point (pI)

51.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 79 - 120 4.1e-09 PHD-finger
Chromo PF00385 736 - 786 2.4e-08 Chromo (CHRromatin Organisation MOdifier) domain
ResIII PF04851 829 - 1000 4.9e-10 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 832 - 1121 3.2e-79 SNF2-related domain
HDA2-3 PF11496 1069 - 1286 1.5e-11 Class II histone deacetylase complex subunits 2 and 3
Helicase_C PF00271 1145 - 1259 1.4e-22 Helicase conserved C-terminal domain
DUF1087 PF06465 1440 - 1481 2.4e-06 CHD subfamily II, DUF1087
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2180, 2817
AarI CACCTGC 2 cut(s) 1402, 2018
AasI GACNNNNNNGTC 3 cut(s) 4356, 5486, 5836
Acc36I ACCTGC 3 cut(s) 94, 1402, 2018
AccB1I GGYRCC 4 cut(s) 2993, 5234, 6724, 7175
AccB7I CCANNNNNTGG 2 cut(s) 2377, 5165
AccBSI CCGCTC 1 cut(s) 4525
AccI GTMKAC 2 cut(s) 2938, 5896
AccII CGCG 3 cut(s) 1024, 3619, 4865
AccIII TCCGGA 5 cut(s) 784, 814, 844, 874, 1852
AclI AACGTT 1 cut(s) 2375
AcoI YGGCCR 2 cut(s) 3540, 6973
AdeI CACNNNGTG 1 cut(s) 701
AfaI GTAC 7 cut(s) 28, 1691, 2982, 3026, 4078, 4327, 4532
AflII CTTAAG 6 cut(s) 320, 3458, 3920, 4795, 6658, 7052
AflIII ACRYGT 1 cut(s) 4863
AhdI GACNNNNNGTC 2 cut(s) 3388, 4864
AjiI CACGTC 1 cut(s) 376
AjuI GAANNNNNNNTTGG 4 cut(s) 4383, 4415, 5674, 5706
AleI CACNNNNGTG 2 cut(s) 4461, 6660
AloI GAACNNNNNNTCC 4 cut(s) 5637, 5669, 7129, 7161
Alw21I GWGCWC 6 cut(s) 728, 2370, 3766, 4288, 4552, 6436
Alw26I GTCTC 8 cut(s) 761, 1522, 2036, 2088, 4872, 5703, 6852, 7186
AlwNI CAGNNNCTG 8 cut(s) 45, 1495, 1970, 2341, 3374, 3596, 6455, 6917
Aor13HI TCCGGA 5 cut(s) 784, 814, 844, 874, 1852
ApaI GGGCCC 2 cut(s) 2010, 2704
ArsI GACNNNNNNTTYG 2 cut(s) 4579, 4611
AseI ATTAAT 1 cut(s) 1376
Asp700I GAANNNNTTC 7 cut(s) 575, 1902, 2850, 3915, 4143, 6385, 6864
AspLEI GCGC 4 cut(s) 1116, 3619, 3834, 5461
AsuC2I CCSGG 3 cut(s) 6056, 7041, 7205
AsuII TTCGAA 1 cut(s) 564
AxyI CCTNAGG 2 cut(s) 906, 966
BaeGI GKGCMC 6 cut(s) 353, 2010, 2704, 4966, 5884, 7178
BalI TGGCCA 2 cut(s) 3542, 6975
BamHI GGATCC 2 cut(s) 1765, 6571
BanI GGYRCC 4 cut(s) 2993, 5234, 6724, 7175
BanII GRGCYC 5 cut(s) 728, 2010, 2704, 4509, 4552
BarI GAAGNNNNNNTAC 2 cut(s) 3387, 3419
BbsI GAAGAC 6 cut(s) 114, 146, 2810, 3063, 4725, 6251
Bbv12I GWGCWC 6 cut(s) 728, 2370, 3766, 4288, 4552, 6436
BbvCI CCTCAGC 1 cut(s) 7155
BceAI ACGGC 3 cut(s) 179, 6434, 6599
BcgI CGANNNNNNTGC 6 cut(s) 1400, 1434, 3291, 3325, 4816, 4850
BciVI GTATCC 1 cut(s) 5196
BclI TGATCA 2 cut(s) 1783, 4693
BcnI CCSGG 3 cut(s) 6056, 7041, 7205
BcoDI GTCTC 8 cut(s) 761, 1522, 2036, 2088, 4872, 5703, 6852, 7186
BfmI CTRYAG 3 cut(s) 1409, 1770, 3393
BfrI CTTAAG 6 cut(s) 320, 3458, 3920, 4795, 6658, 7052
BfuAI ACCTGC 3 cut(s) 94, 1402, 2018
BfuI GTATCC 1 cut(s) 5196
BglI GCCNNNNNGGC 1 cut(s) 2677
BglII AGATCT 1 cut(s) 680
BlpI GCTNAGC 2 cut(s) 4569, 7035
BmeRI GACNNNNNGTC 2 cut(s) 3388, 4864
BmgBI CACGTC 1 cut(s) 376
BmrI ACTGGG 3 cut(s) 55, 606, 6315
BmuI ACTGGG 3 cut(s) 55, 606, 6315
BoxI GACNNNNGTC 2 cut(s) 196, 3636
BpiI GAAGAC 6 cut(s) 114, 146, 2810, 3063, 4725, 6251
BplI GAGNNNNNCTC 4 cut(s) 2317, 2349, 3209, 3241
BpmI CTGGAG 8 cut(s) 284, 714, 825, 855, 885, 915, 6717, 6876
Bpu10I CCTNAGC 1 cut(s) 7155
Bpu1102I GCTNAGC 2 cut(s) 4569, 7035
Bpu14I TTCGAA 1 cut(s) 564
BpuEI CTTGAG 6 cut(s) 117, 1165, 3548, 4987, 5765, 6916
BpuMI CCSGG 3 cut(s) 6056, 7041, 7205
Bsa29I ATCGAT 2 cut(s) 2917, 3311
BsaBI GATNNNNATC 2 cut(s) 1788, 4692
BsaI GGTCTC 1 cut(s) 5703
BsaWI WCCGGW 5 cut(s) 784, 814, 844, 874, 1852
BsaXI ACNNNNNCTCC 4 cut(s) 4774, 4804, 6514, 6544
Bse21I CCTNAGG 2 cut(s) 906, 966
Bse3DI GCAATG 5 cut(s) 3258, 5706, 6023, 6639, 6956
Bse8I GATNNNNATC 2 cut(s) 1788, 4692
BseAI TCCGGA 5 cut(s) 784, 814, 844, 874, 1852
BseCI ATCGAT 2 cut(s) 2917, 3311
BseJI GATNNNNATC 2 cut(s) 1788, 4692
BseMI GCAATG 5 cut(s) 3258, 5706, 6023, 6639, 6956
BseRI GAGGAG 9 cut(s) 2207, 3095, 4241, 4400, 5040, 5049, 5783, 5786, 6546
BseSI GKGCMC 6 cut(s) 353, 2010, 2704, 4966, 5884, 7178
BseYI CCCAGC 1 cut(s) 2100
BsgI GTGCAG 3 cut(s) 2046, 4437, 6345
Bsh1236I CGCG 3 cut(s) 1024, 3619, 4865
BshNI GGYRCC 4 cut(s) 2993, 5234, 6724, 7175
BshVI ATCGAT 2 cut(s) 2917, 3311
BsiHKAI GWGCWC 6 cut(s) 728, 2370, 3766, 4288, 4552, 6436
BsmAI GTCTC 8 cut(s) 761, 1522, 2036, 2088, 4872, 5703, 6852, 7186
BsmBI CGTCTC 3 cut(s) 2036, 4872, 7186
BsmI GAATGC 4 cut(s) 2297, 3448, 4422, 6283
Bso31I GGTCTC 1 cut(s) 5703
Bsp119I TTCGAA 1 cut(s) 564
Bsp120I GGGCCC 2 cut(s) 2006, 2700
Bsp13I TCCGGA 5 cut(s) 784, 814, 844, 874, 1852
Bsp1407I TGTACA 2 cut(s) 1689, 3024
Bsp1720I GCTNAGC 2 cut(s) 4569, 7035
Bsp19I CCATGG 5 cut(s) 1234, 1731, 2728, 6123, 6837
BspDI ATCGAT 2 cut(s) 2917, 3311
BspEI TCCGGA 5 cut(s) 784, 814, 844, 874, 1852
BspFNI CGCG 3 cut(s) 1024, 3619, 4865
BspHI TCATGA 3 cut(s) 1882, 3406, 6043
BspMAI CTGCAG 2 cut(s) 1413, 1774
BspMI ACCTGC 3 cut(s) 94, 1402, 2018
BspQI GCTCTTC 3 cut(s) 3822, 4233, 6510
BspT104I TTCGAA 1 cut(s) 564
BspT107I GGYRCC 4 cut(s) 2993, 5234, 6724, 7175
BspTI CTTAAG 6 cut(s) 320, 3458, 3920, 4795, 6658, 7052
BspTNI GGTCTC 1 cut(s) 5703
BsrBI CCGCTC 1 cut(s) 4525
BsrDI GCAATG 5 cut(s) 3258, 5706, 6023, 6639, 6956
BsrGI TGTACA 2 cut(s) 1689, 3024
Bst6I CTCTTC 9 cut(s) 1094, 1121, 1893, 3006, 3822, 4031, 4233, 5141, 6510
BstAFI CTTAAG 6 cut(s) 320, 3458, 3920, 4795, 6658, 7052
BstAPI GCANNNNNTGC 4 cut(s) 3454, 4451, 4565, 6080
BstAUI TGTACA 2 cut(s) 1689, 3024
BstBI TTCGAA 1 cut(s) 564
BstDSI CCRYGG 6 cut(s) 1234, 1731, 2230, 2728, 6123, 6837
BstENI CCTNNNNNAGG 1 cut(s) 1313
BstFNI CGCG 3 cut(s) 1024, 3619, 4865
BstHHI GCGC 4 cut(s) 1116, 3619, 3834, 5461
BstMAI GTCTC 8 cut(s) 761, 1522, 2036, 2088, 4872, 5703, 6852, 7186
BstNSI RCATGY 5 cut(s) 1688, 1928, 2777, 3415, 5332
BstPAI GACNNNNGTC 2 cut(s) 196, 3636
BstSFI CTRYAG 3 cut(s) 1409, 1770, 3393
BstSLI GKGCMC 6 cut(s) 353, 2010, 2704, 4966, 5884, 7178
BstUI CGCG 3 cut(s) 1024, 3619, 4865
BstV2I GAAGAC 6 cut(s) 114, 146, 2810, 3063, 4725, 6251
BstX2I RGATCY 6 cut(s) 680, 1163, 1765, 3581, 6571, 7126
BstXI CCANNNNNNTGG 2 cut(s) 1762, 6688
BstYI RGATCY 6 cut(s) 680, 1163, 1765, 3581, 6571, 7126
Bsu15I ATCGAT 2 cut(s) 2917, 3311
Bsu36I CCTNAGG 2 cut(s) 906, 966
BsuI GTATCC 1 cut(s) 5196
BsuTUI ATCGAT 2 cut(s) 2917, 3311
BtgI CCRYGG 6 cut(s) 1234, 1731, 2230, 2728, 6123, 6837
BtgZI GCGATG 1 cut(s) 684
BtrI CACGTC 1 cut(s) 376
BtsI GCAGTG 6 cut(s) 353, 3597, 4014, 4677, 5267, 5882
BveI ACCTGC 3 cut(s) 94, 1402, 2018
CaiI CAGNNNCTG 8 cut(s) 45, 1495, 1970, 2341, 3374, 3596, 6455, 6917
CciI TCATGA 3 cut(s) 1882, 3406, 6043
CfoI GCGC 4 cut(s) 1116, 3619, 3834, 5461
ClaI ATCGAT 2 cut(s) 2917, 3311
CseI GACGC 2 cut(s) 4854, 7133
CsiI ACCWGGT 1 cut(s) 697
Csp6I GTAC 7 cut(s) 27, 1690, 2981, 3025, 4077, 4326, 4531
CviQI GTAC 7 cut(s) 27, 1690, 2981, 3025, 4077, 4326, 4531
DraI TTTAAA 7 cut(s) 390, 1809, 2239, 4122, 5439, 6360, 6780
DraIII CACNNNGTG 1 cut(s) 701
DrdI GACNNNNNNGTC 3 cut(s) 4356, 5486, 5836
DriI GACNNNNNGTC 2 cut(s) 3388, 4864
DseDI GACNNNNNNGTC 3 cut(s) 4356, 5486, 5836
EaeI YGGCCR 2 cut(s) 3540, 6973
Eam1104I CTCTTC 9 cut(s) 1094, 1121, 1893, 3006, 3822, 4031, 4233, 5141, 6510
Eam1105I GACNNNNNGTC 2 cut(s) 3388, 4864
EarI CTCTTC 9 cut(s) 1094, 1121, 1893, 3006, 3822, 4031, 4233, 5141, 6510
Ecl136II GAGCTC 2 cut(s) 726, 4550
Eco24I GRGCYC 5 cut(s) 728, 2010, 2704, 4509, 4552
Eco31I GGTCTC 1 cut(s) 5703
Eco32I GATATC 2 cut(s) 1981, 3523
Eco53kI GAGCTC 2 cut(s) 726, 4550
Eco81I CCTNAGG 2 cut(s) 906, 966
EcoICRI GAGCTC 2 cut(s) 726, 4550
EcoNI CCTNNNNNAGG 1 cut(s) 1313
EcoO109I RGGNCCY 7 cut(s) 1306, 1492, 2006, 2701, 2881, 5070, 6230
EcoRI GAATTC 1 cut(s) 1437
EcoRV GATATC 2 cut(s) 1981, 3523
EcoT22I ATGCAT 3 cut(s) 943, 1018, 5122
EcoT38I GRGCYC 5 cut(s) 728, 2010, 2704, 4509, 4552
Esp3I CGTCTC 3 cut(s) 2036, 4872, 7186
FalI AAGNNNNNCTT 6 cut(s) 3903, 3935, 4383, 4415, 5631, 5663
FauI CCCGC 4 cut(s) 2208, 4518, 4546, 5319
FauNDI CATATG 5 cut(s) 2842, 3147, 3565, 4447, 5514
FbaI TGATCA 2 cut(s) 1783, 4693
FblI GTMKAC 2 cut(s) 2938, 5896
FriOI GRGCYC 5 cut(s) 728, 2010, 2704, 4509, 4552
GlaI GCGC 4 cut(s) 1115, 3618, 3833, 5460
GsaI CCCAGC 1 cut(s) 2104
GsuI CTGGAG 8 cut(s) 284, 714, 825, 855, 885, 915, 6717, 6876
HgaI GACGC 2 cut(s) 4854, 7133
HhaI GCGC 4 cut(s) 1116, 3619, 3834, 5461
Hin6I GCGC 4 cut(s) 1114, 3617, 3832, 5459
HinP1I GCGC 4 cut(s) 1114, 3617, 3832, 5459
HincII GTYRAC 4 cut(s) 21, 2988, 3258, 3438
HindII GTYRAC 4 cut(s) 21, 2988, 3258, 3438
HindIII AAGCTT 5 cut(s) 71, 2256, 3423, 3857, 5783
HpaI GTTAAC 1 cut(s) 3258
Hpy99I CGWCG 2 cut(s) 165, 6585
HpyCH4IV ACGT 7 cut(s) 64, 375, 2023, 2045, 2375, 4357, 4594
HpySE526I ACGT 7 cut(s) 64, 375, 2023, 2045, 2375, 4357, 4594
HspAI GCGC 4 cut(s) 1114, 3617, 3832, 5459
KflI GGGWCCC 2 cut(s) 2881, 6230
Kpn2I TCCGGA 5 cut(s) 784, 814, 844, 874, 1852
Ksp22I TGATCA 2 cut(s) 1783, 4693
KspAI GTTAAC 1 cut(s) 3258
LguI GCTCTTC 3 cut(s) 3822, 4233, 6510
MabI ACCWGGT 1 cut(s) 697
MaeII ACGT 7 cut(s) 64, 375, 2023, 2045, 2375, 4357, 4594
MbiI CCGCTC 1 cut(s) 4525
MfeI CAATTG 4 cut(s) 2512, 3612, 4233, 5689
MflI RGATCY 6 cut(s) 680, 1163, 1765, 3581, 6571, 7126
MlsI TGGCCA 2 cut(s) 3542, 6975
MluI ACGCGT 1 cut(s) 4863
MluNI TGGCCA 2 cut(s) 3542, 6975
MmeI TCCRAC 5 cut(s) 1743, 2995, 5438, 5616, 6056
Mox20I TGGCCA 2 cut(s) 3542, 6975
Mph1103I ATGCAT 3 cut(s) 943, 1018, 5122
MroI TCCGGA 5 cut(s) 784, 814, 844, 874, 1852
MroXI GAANNNNTTC 7 cut(s) 575, 1902, 2850, 3915, 4143, 6385, 6864
MscI TGGCCA 2 cut(s) 3542, 6975
MslI CAYNNNNRTG 8 cut(s) 2733, 2778, 2874, 3326, 4461, 5573, 6660, 6686
Msp20I TGGCCA 2 cut(s) 3542, 6975
MspA1I CMGCKG 8 cut(s) 626, 794, 824, 854, 884, 1484, 2215, 6971
MspCI CTTAAG 6 cut(s) 320, 3458, 3920, 4795, 6658, 7052
MunI CAATTG 4 cut(s) 2512, 3612, 4233, 5689
Mva1269I GAATGC 4 cut(s) 2297, 3448, 4422, 6283
MvnI CGCG 3 cut(s) 1024, 3619, 4865
NciI CCSGG 3 cut(s) 6056, 7041, 7205
NcoI CCATGG 5 cut(s) 1234, 1731, 2728, 6123, 6837
NdeI CATATG 5 cut(s) 2842, 3147, 3565, 4447, 5514
NsiI ATGCAT 3 cut(s) 943, 1018, 5122
NspI RCATGY 5 cut(s) 1688, 1928, 2777, 3415, 5332
NspV TTCGAA 1 cut(s) 564
OliI CACNNNNGTG 2 cut(s) 4461, 6660
PaeI GCATGC 2 cut(s) 2777, 5332
PagI TCATGA 3 cut(s) 1882, 3406, 6043
PaqCI CACCTGC 2 cut(s) 1402, 2018
PasI CCCWGGG 1 cut(s) 1187
PciSI GCTCTTC 3 cut(s) 3822, 4233, 6510
PcsI WCGNNNNNNNCGW 4 cut(s) 1794, 3766, 4411, 6493
PctI GAATGC 4 cut(s) 2297, 3448, 4422, 6283
PdmI GAANNNNTTC 7 cut(s) 575, 1902, 2850, 3915, 4143, 6385, 6864
PflFI GACNNNGTC 2 cut(s) 3704, 7120
PflMI CCANNNNNTGG 2 cut(s) 2377, 5165
PfoI TCCNGGA 1 cut(s) 6892
PpuMI RGGWCCY 5 cut(s) 1306, 1492, 2881, 5070, 6230
PshAI GACNNNNGTC 2 cut(s) 196, 3636
PshBI ATTAAT 1 cut(s) 1376
PsiI TTATAA 2 cut(s) 2180, 2817
Psp124BI GAGCTC 2 cut(s) 728, 4552
Psp1406I AACGTT 1 cut(s) 2375
Psp5II RGGWCCY 5 cut(s) 1306, 1492, 2881, 5070, 6230
PspFI CCCAGC 1 cut(s) 2100
PspOMI GGGCCC 2 cut(s) 2006, 2700
PspPPI RGGWCCY 5 cut(s) 1306, 1492, 2881, 5070, 6230
PstI CTGCAG 2 cut(s) 1413, 1774
PstNI CAGNNNCTG 8 cut(s) 45, 1495, 1970, 2341, 3374, 3596, 6455, 6917
PsuI RGATCY 6 cut(s) 680, 1163, 1765, 3581, 6571, 7126
PsyI GACNNNGTC 2 cut(s) 3704, 7120
PvuII CAGCTG 7 cut(s) 626, 794, 824, 854, 884, 1484, 6971
RsaI GTAC 7 cut(s) 28, 1691, 2982, 3026, 4078, 4327, 4532
RsaNI GTAC 7 cut(s) 27, 1690, 2981, 3025, 4077, 4326, 4531
RseI CAYNNNNRTG 8 cut(s) 2733, 2778, 2874, 3326, 4461, 5573, 6660, 6686
SacI GAGCTC 2 cut(s) 728, 4552
SapI GCTCTTC 3 cut(s) 3822, 4233, 6510
SbfI CCTGCAGG 2 cut(s) 1413, 1774
SdaI CCTGCAGG 2 cut(s) 1413, 1774
SexAI ACCWGGT 1 cut(s) 697
SfcI CTRYAG 3 cut(s) 1409, 1770, 3393
SfuI TTCGAA 1 cut(s) 564
SmiMI CAYNNNNRTG 8 cut(s) 2733, 2778, 2874, 3326, 4461, 5573, 6660, 6686
SphI GCATGC 2 cut(s) 2777, 5332
Sse8387I CCTGCAGG 2 cut(s) 1413, 1774
SspI AATATT 3 cut(s) 1861, 3184, 3286
SstI GAGCTC 2 cut(s) 728, 4552
TaiI ACGT 7 cut(s) 67, 378, 2026, 2048, 2378, 4360, 4597
TaqII GACCGA 2 cut(s) 3212, 6477
TatI WGTACW 5 cut(s) 26, 1689, 2980, 3024, 4530
TauI GCSGC 1 cut(s) 4703
TspGWI ACGGA 5 cut(s) 2219, 4094, 4565, 5035, 5660
Tth111I GACNNNGTC 2 cut(s) 3704, 7120
Van91I CCANNNNNTGG 2 cut(s) 2377, 5165
Vha464I CTTAAG 6 cut(s) 320, 3458, 3920, 4795, 6658, 7052
VspI ATTAAT 1 cut(s) 1376
XagI CCTNNNNNAGG 1 cut(s) 1313
XceI RCATGY 5 cut(s) 1688, 1928, 2777, 3415, 5332
XcmI CCANNNNNNNNNTGG 2 cut(s) 5503, 6121
XmiI GTMKAC 2 cut(s) 2938, 5896
XmnI GAANNNNTTC 7 cut(s) 575, 1902, 2850, 3915, 4143, 6385, 6864
Zsp2I ATGCAT 3 cut(s) 943, 1018, 5122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.