Rorug05G0061100

DUF1087

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0005784
Physical Location & Seq
Reverse (-)
5295660 .. 5300917
5258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0061100.1

Sequence Viewer

Length: 1755 bp
ATGACTACAGGGTCATTGGGAATTCGTTCAGGGAGTTATGGGTCTCTGGATAAACAGGCACAGAACAACAGCATCAGCATCATCAACAACGGAGTGTTGCCTATTCAATCTGCACGAAAGCCTTCGAAAATGCTCAAGGAGAAGGAGAGGCTGTTCCATTCGATCTGCAAGTTTGCTGGCCGGAAAAAGGTGGGAATGTTGCTGCTGTGCGTAATCTCTGCTGCGGTTTTCGGATGGGTTTTGTATGTTGGAAAAGGTGAAGACTCACAAGAAGGCATCGCTCGCCAAAACATTAGTCTTAACAACAGCGTCATTTTAAGGAATCCTGAATCCTTGGTGAAAAACGATGAGCAAAGTTACAACATATCACCGCTAGCCTTGCCCCCTCCTCCTCCTGCTTTTTTCTTGGGTTATACTCTTCCTCCTGGGCATCCATGTAATATATTCACGTTGCCTCCCCCACCAGCAGATAAGAAGAGATCTGGACCACGGCCTTGTCCAGTATGTTATCTTCCTGTTGAAGAAGCCATAGCCTTAATGCCAAAGGTCCCTTCATATTCTCCTGTTCTTAAGAATTTGACATACATTTATGAAGAAAATTTATCAAGAGAAACAGAATTTGGAGGCTCAGATTTTGGCGGATATCCTACTTTGAAGCAAAGGAGTGATTCATATGATATAAGAGAGTCAATGAGTGTGCATTGTGGGTTTGTCAAAGGAAGTAAACCTGGGCGTAATACAGGGTATGATATGGATGAGGATGACCTACATGATATGGAGCAGTGTCATGGTGTGGTGGTTGCATCAGCTATATTTGCAAATTTTGATGAGATAAACCAGCCAAGGAACATTAGCGATTATTCCAGGGAGACTGTTTGCTTCTACATGTTTATAGACGAGGAGACGGAAGCTTATCTGAAGAACAGTAGTAAACTGGACAGCAGAAAGAAAATTGGTGTATGGAGAACTGTTGTTATTCATAACCCACCTTATAAGGATGGACGGCGCACTGGGAAGATTCCTAAGCTCCTAGTGCACAGAATGTTTCCCAATGCCCGCTTTTCCTTATGGATCGATGGGAAACTGGAGCTTGTCGTGGATCCATACCAAATTCTTGAAAGGTTTTTGTGGAGGAAGAATGCAACTTTTGCAATTTCTAGACATTATAAGCGCTTTGATGTGTTTACGGAAGCTGAGGCAAATAAAGTTGCTGGAAAATATGACAATGCCTCTATTGACTTTCAGGTTGAATTTTACAAAAAGGAAGGTTTGACCCCATATTCTGAGGCAAAACTTCCCATTACAAGTGATGTTCCTGAAGGATGTGTAATAATAAGGGAGCATGTCCCTATCAGCAACCTCTTCACTTGTCTTTGGTTCAATGAAGTTGATCGTTTTACTTCCAGGGACCAAATTAGTTTTTCAACTGTCAGAGATCACATTACAGCAAAGACAAACTGGACTATCAATATGTTCCTTGACTGTGAAAGGCGCAATTTTGTAGTTCAGAAATACCATAAAGATGTATTAGAGCACATGGCTCCTCATATTCCTGTTGCTGCTCTTCCACCACCACCACCACCGCCATCACTGCCACCACCAGCTTTAAGCAATGAACCACCAGTCAAACCAGTTGAAACGGTGCCTGAAAGGCCAGTAAGGAAGATCCAACCAGGGCGCCGGAGAGAAAGGAGGCCTGGTTCCAGACGTCACCGCAAAGTTATTACCGGAAATAGAGACACTGATACAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006323 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007289 GO:0007399 GO:0007417 GO:0007420 GO:0008150 GO:0008152 GO:0008213 GO:0008285 GO:0009506 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0016581 GO:0016604 GO:0016607 GO:0017053 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019953 GO:0021895 GO:0021953 GO:0022008 GO:0022412 GO:0022414 GO:0023051 GO:0023056 GO:0030054 GO:0030154 GO:0030182 GO:0030900 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034728 GO:0034968 GO:0035064 GO:0035092 GO:0035093 GO:0036211 GO:0042127 GO:0042393 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043486 GO:0043543 GO:0043933 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0045165 GO:0048232 GO:0048468 GO:0048513 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048609 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051704 GO:0055044 GO:0060255 GO:0060322 GO:0060850 GO:0061628 GO:0065007 GO:0070013 GO:0070603 GO:0070734 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0098532 GO:0140030 GO:0140034 GO:1901564 GO:1901796 GO:1901798 GO:1902494 GO:1902531 GO:1902533 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05165 ko05203 map05165 map05203
Pfam Domains
Protein Families
Chromo DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

584

Amino Acids

66.21

Weight (kDa)

9.06

Isoelectric Point (pI)

57.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOD1_MUCI70 PF04765 193 - 506 2.9e-152 TOD1/MUCI70, glycosyltransferase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 993, 1167
AasI GACNNNNNNGTC 1 cut(s) 10
AatII GACGTC 1 cut(s) 1711
AccB1I GGYRCC 2 cut(s) 1642, 1677
AciI CCGC 6 cut(s) 224, 371, 639, 1057, 1583, 1714
AclWI GGATC 4 cut(s) 1079, 1094, 1107, 1660
AcoI YGGCCR 1 cut(s) 178
AcsI RAATTY 7 cut(s) 21, 574, 598, 617, 820, 1110, 1250
AcuI CTGAAG 2 cut(s) 938, 1338
AcyI GRCGYC 2 cut(s) 1678, 1708
AfeI AGCGCT 1 cut(s) 1172
AfiI CCNNNNNNNGG 1 cut(s) 187
AflII CTTAAG 1 cut(s) 569
AflIII ACRYGT 1 cut(s) 885
AgsI TTSAA 8 cut(s) 107, 521, 655, 1118, 1250, 1381, 1425, 1637
AjnI CCWGG 6 cut(s) 424, 727, 863, 1403, 1672, 1696
AjuI GAANNNNNNNTTGG 4 cut(s) 535, 567, 603, 635
AloI GAACNNNNNNTCC 4 cut(s) 137, 169, 1684, 1716
AluBI AGCT 6 cut(s) 809, 911, 1027, 1090, 1193, 1604
AluI AGCT 6 cut(s) 809, 911, 1027, 1090, 1193, 1604
Alw21I GWGCWC 2 cut(s) 1038, 1536
Alw26I GTCTC 4 cut(s) 48, 863, 896, 1731
Alw44I GTGCAC 1 cut(s) 1034
AlwI GGATC 4 cut(s) 1079, 1094, 1107, 1660
Aor51HI AGCGCT 1 cut(s) 1172
AoxI GGCC 4 cut(s) 178, 491, 1652, 1694
ApaLI GTGCAC 1 cut(s) 1034
ApeKI GCWGC 3 cut(s) 202, 221, 1559
ApoI RAATTY 7 cut(s) 21, 574, 598, 617, 820, 1110, 1250
ArsI GACNNNNNNTTYG 2 cut(s) 280, 312
Asp700I GAANNNNTTC 2 cut(s) 25, 121
AspLEI GCGC 4 cut(s) 1008, 1173, 1494, 1680
AspS9I GGNCC 3 cut(s) 485, 547, 1408
AsuHPI GGTGA 4 cut(s) 269, 349, 360, 1703
AsuII TTCGAA 1 cut(s) 125
AsuNHI GCTAGC 1 cut(s) 373
AvaII GGWCC 3 cut(s) 485, 547, 1408
BaeGI GKGCMC 1 cut(s) 1038
BamHI GGATCC 1 cut(s) 1099
BanI GGYRCC 2 cut(s) 1642, 1677
BarI GAAGNNNNNNTAC 2 cut(s) 495, 527
BbsI GAAGAC 1 cut(s) 267
Bbv12I GWGCWC 2 cut(s) 1038, 1536
BbvCI CCTCAGC 1 cut(s) 1194
BbvI GCAGC 3 cut(s) 189, 208, 1546
BccI CCATC 4 cut(s) 228, 992, 1070, 1594
BceAI ACGGC 2 cut(s) 506, 1019
BciT130I CCWGG 6 cut(s) 426, 729, 865, 1405, 1674, 1698
BcoDI GTCTC 4 cut(s) 48, 863, 896, 1731
BfaI CTAG 3 cut(s) 374, 1031, 1158
BfmI CTRYAG 1 cut(s) 6
BfoI RGCGCY 2 cut(s) 1174, 1681
BfrI CTTAAG 1 cut(s) 569
BglI GCCNNNNNGGC 1 cut(s) 1651
BglII AGATCT 1 cut(s) 479
BisI GCNGC 3 cut(s) 203, 222, 1560
BlsI GCNGC 3 cut(s) 204, 223, 1561
Bme1390I CCNGG 6 cut(s) 426, 729, 865, 1405, 1674, 1698
Bme18I GGWCC 3 cut(s) 485, 547, 1408
BmgT120I GGNCC 3 cut(s) 485, 547, 1408
BmiI GGNNCC 7 cut(s) 549, 1101, 1409, 1542, 1644, 1679, 1702
BmrFI CCNGG 6 cut(s) 426, 729, 865, 1405, 1674, 1698
BmrI ACTGGG 1 cut(s) 1020
BmsI GCATC 5 cut(s) 81, 87, 285, 439, 812
BmtI GCTAGC 1 cut(s) 377
BmuI ACTGGG 1 cut(s) 1020
BpiI GAAGAC 1 cut(s) 267
BpmI CTGGAG 1 cut(s) 1106
Bpu10I CCTNAGC 2 cut(s) 1023, 1194
Bpu14I TTCGAA 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 119
Bsa29I ATCGAT 1 cut(s) 1074
BsaHI GRCGYC 2 cut(s) 1678, 1708
BsaI GGTCTC 1 cut(s) 48
BsaJI CCNNGG 8 cut(s) 333, 425, 488, 728, 842, 864, 1404, 1673
BsaWI WCCGGW 1 cut(s) 1727
BsaXI ACNNNNNCTCC 8 cut(s) 137, 167, 406, 436, 439, 469, 1684, 1714
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse1I ACTGG 8 cut(s) 500, 939, 1015, 1089, 1463, 1622, 1631, 1655
Bse3DI GCAATG 1 cut(s) 1618
BseBI CCWGG 6 cut(s) 426, 729, 865, 1405, 1674, 1698
BseCI ATCGAT 1 cut(s) 1074
BseDI CCNNGG 8 cut(s) 333, 425, 488, 728, 842, 864, 1404, 1673
BseGI GGATG 6 cut(s) 239, 430, 760, 766, 1003, 1328
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMI GCAATG 1 cut(s) 1618
BseMII CTCAG 3 cut(s) 642, 1185, 1275
BseNI ACTGG 8 cut(s) 500, 939, 1015, 1089, 1463, 1622, 1631, 1655
BseRI GAGGAG 4 cut(s) 378, 381, 914, 1533
BseSI GKGCMC 1 cut(s) 1038
BseXI GCAGC 3 cut(s) 189, 208, 1546
BsgI GTGCAG 1 cut(s) 96
BshFI GGCC 4 cut(s) 180, 493, 1654, 1696
BshNI GGYRCC 2 cut(s) 1642, 1677
BshVI ATCGAT 1 cut(s) 1074
BsiHKAI GWGCWC 2 cut(s) 1038, 1536
BsiSI CCGG 3 cut(s) 181, 1681, 1728
BslFI GGGAC 3 cut(s) 533, 1331, 1421
BslI CCNNNNNNNGG 1 cut(s) 187
BsmAI GTCTC 4 cut(s) 48, 863, 896, 1731
BsmBI CGTCTC 1 cut(s) 896
BsmFI GGGAC 3 cut(s) 533, 1331, 1421
BsmI GAATGC 1 cut(s) 1144
BsnI GGCC 4 cut(s) 180, 493, 1654, 1696
Bso31I GGTCTC 1 cut(s) 48
Bsp119I TTCGAA 1 cut(s) 125
Bsp1286I GDGCHC 2 cut(s) 1038, 1536
Bsp143I GATC 7 cut(s) 162, 479, 1071, 1099, 1390, 1435, 1665
BspACI CCGC 6 cut(s) 224, 371, 639, 1057, 1583, 1714
BspANI GGCC 4 cut(s) 180, 493, 1654, 1696
BspCNI CTCAG 3 cut(s) 641, 1186, 1276
BspDI ATCGAT 1 cut(s) 1074
BspLI GGNNCC 7 cut(s) 549, 1101, 1409, 1542, 1644, 1679, 1702
BspOI GCTAGC 1 cut(s) 377
BspPI GGATC 4 cut(s) 1079, 1094, 1107, 1660
BspQI GCTCTTC 1 cut(s) 1569
BspT104I TTCGAA 1 cut(s) 125
BspT107I GGYRCC 2 cut(s) 1642, 1677
BspTI CTTAAG 1 cut(s) 569
BspTNI GGTCTC 1 cut(s) 48
BsrDI GCAATG 1 cut(s) 1618
BsrI ACTGG 8 cut(s) 500, 939, 1015, 1089, 1463, 1622, 1631, 1655
BssECI CCNNGG 8 cut(s) 333, 425, 488, 728, 842, 864, 1404, 1673
BssMI GATC 7 cut(s) 162, 479, 1071, 1099, 1390, 1435, 1665
BssNI GRCGYC 2 cut(s) 1678, 1708
BssT1I CCWWGG 2 cut(s) 333, 842
Bst2UI CCWGG 6 cut(s) 426, 729, 865, 1405, 1674, 1698
Bst4CI ACNGT 6 cut(s) 874, 926, 970, 1429, 1484, 1642
Bst6I CTCTTC 4 cut(s) 423, 470, 1367, 1569
BstACI GRCGYC 2 cut(s) 1678, 1708
BstAFI CTTAAG 1 cut(s) 569
BstAPI GCANNNNNTGC 1 cut(s) 1148
BstBI TTCGAA 1 cut(s) 125
BstC8I GCNNGC 4 cut(s) 178, 283, 375, 1057
BstDEI CTNAG 4 cut(s) 628, 1023, 1194, 1284
BstDSI CCRYGG 1 cut(s) 488
BstF5I GGATG 6 cut(s) 239, 430, 760, 766, 1003, 1328
BstH2I RGCGCY 2 cut(s) 1174, 1681
BstHHI GCGC 4 cut(s) 1008, 1173, 1494, 1680
BstKTI GATC 7 cut(s) 165, 482, 1074, 1102, 1393, 1438, 1668
BstMAI GTCTC 4 cut(s) 48, 863, 896, 1731
BstMBI GATC 7 cut(s) 162, 479, 1071, 1099, 1390, 1435, 1665
BstMWI GCNNNNNNNGC 7 cut(s) 282, 379, 815, 1033, 1148, 1591, 1651
BstNI CCWGG 6 cut(s) 426, 729, 865, 1405, 1674, 1698
BstNSI RCATGY 2 cut(s) 889, 1346
BstSCI CCNGG 6 cut(s) 424, 727, 863, 1403, 1672, 1696
BstSFI CTRYAG 1 cut(s) 6
BstSLI GKGCMC 1 cut(s) 1038
BstV1I GCAGC 3 cut(s) 189, 208, 1546
BstV2I GAAGAC 1 cut(s) 267
BstX2I RGATCY 3 cut(s) 479, 1099, 1665
BstYI RGATCY 3 cut(s) 479, 1099, 1665
Bsu15I ATCGAT 1 cut(s) 1074
BsuRI GGCC 4 cut(s) 180, 493, 1654, 1696
BsuTUI ATCGAT 1 cut(s) 1074
BtgI CCRYGG 1 cut(s) 488
BtgZI GCGATG 1 cut(s) 262
BtsCI GGATG 6 cut(s) 239, 430, 760, 766, 1003, 1328
BtsI GCAGTG 2 cut(s) 788, 1589
BtsIMutI CAGTG 4 cut(s) 788, 1008, 1589, 1740
Cac8I GCNNGC 4 cut(s) 178, 283, 375, 1057
CfoI GCGC 4 cut(s) 1008, 1173, 1494, 1680
Cfr13I GGNCC 3 cut(s) 485, 547, 1408
ClaI ATCGAT 1 cut(s) 1074
CseI GACGC 1 cut(s) 298
CviAII CATG 6 cut(s) 435, 770, 788, 886, 1343, 1537
DdeI CTNAG 4 cut(s) 628, 1023, 1194, 1284
DinI GGCGCC 1 cut(s) 1679
DpnI GATC 7 cut(s) 164, 481, 1073, 1101, 1392, 1437, 1667
DpnII GATC 7 cut(s) 162, 479, 1071, 1099, 1390, 1435, 1665
DrdI GACNNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 178
Eam1104I CTCTTC 4 cut(s) 423, 470, 1367, 1569
EarI CTCTTC 4 cut(s) 423, 470, 1367, 1569
EciI GGCGGA 1 cut(s) 654
Eco130I CCWWGG 2 cut(s) 333, 842
Eco147I AGGCCT 1 cut(s) 1696
Eco31I GGTCTC 1 cut(s) 48
Eco32I GATATC 1 cut(s) 644
Eco47I GGWCC 3 cut(s) 485, 547, 1408
Eco47III AGCGCT 1 cut(s) 1172
Eco57I CTGAAG 2 cut(s) 938, 1338
EcoO109I RGGNCCY 1 cut(s) 547
EcoRI GAATTC 1 cut(s) 21
EcoRII CCWGG 6 cut(s) 424, 727, 863, 1403, 1672, 1696
EcoRV GATATC 1 cut(s) 644
EcoT14I CCWWGG 2 cut(s) 333, 842
EgeI GGCGCC 1 cut(s) 1679
EheI GGCGCC 1 cut(s) 1679
ErhI CCWWGG 2 cut(s) 333, 842
Esp3I CGTCTC 1 cut(s) 896
FaeI CATG 6 cut(s) 438, 773, 791, 889, 1346, 1540
FaqI GGGAC 3 cut(s) 533, 1331, 1421
FatI CATG 6 cut(s) 434, 769, 787, 885, 1342, 1536
FauI CCCGC 1 cut(s) 1064
FauNDI CATATG 1 cut(s) 673
Fnu4HI GCNGC 3 cut(s) 203, 222, 1560
FokI GGATG 6 cut(s) 246, 417, 767, 773, 1010, 1335
Fsp4HI GCNGC 3 cut(s) 203, 222, 1560
FspBI CTAG 3 cut(s) 374, 1031, 1158
GlaI GCGC 4 cut(s) 1007, 1172, 1493, 1679
GluI GCNGC 3 cut(s) 203, 222, 1560
GsuI CTGGAG 1 cut(s) 1106
HaeII RGCGCY 2 cut(s) 1174, 1681
HaeIII GGCC 4 cut(s) 180, 493, 1654, 1696
HapII CCGG 3 cut(s) 181, 1681, 1728
HgaI GACGC 1 cut(s) 298
HhaI GCGC 4 cut(s) 1008, 1173, 1494, 1680
Hin1I GRCGYC 2 cut(s) 1678, 1708
Hin1II CATG 6 cut(s) 438, 773, 791, 889, 1346, 1540
Hin6I GCGC 4 cut(s) 1006, 1171, 1492, 1678
HinP1I GCGC 4 cut(s) 1006, 1171, 1492, 1678
HindIII AAGCTT 1 cut(s) 909
HinfI GANTC 6 cut(s) 263, 322, 329, 668, 686, 1018
HpaII CCGG 3 cut(s) 181, 1681, 1728
HphI GGTGA 4 cut(s) 269, 349, 360, 1703
Hpy166II GTNNAC 4 cut(s) 725, 932, 1036, 1185
Hpy188I TCNGA 6 cut(s) 233, 631, 918, 1285, 1433, 1509
Hpy188III TCNNGA 8 cut(s) 47, 326, 483, 606, 1115, 1158, 1316, 1704
Hpy8I GTNNAC 4 cut(s) 725, 932, 1036, 1185
HpyAV CCTTC 6 cut(s) 132, 136, 266, 561, 1259, 1313
HpyCH4III ACNGT 6 cut(s) 874, 926, 970, 1429, 1484, 1642
HpyCH4IV ACGT 2 cut(s) 449, 1708
HpyCH4V TGCA 8 cut(s) 113, 168, 700, 803, 818, 1036, 1142, 1151
HpyF10VI GCNNNNNNNGC 7 cut(s) 282, 379, 815, 1033, 1148, 1591, 1651
HpyF3I CTNAG 4 cut(s) 628, 1023, 1194, 1284
HpySE526I ACGT 2 cut(s) 449, 1708
Hsp92I GRCGYC 2 cut(s) 1678, 1708
Hsp92II CATG 6 cut(s) 438, 773, 791, 889, 1346, 1540
HspAI GCGC 4 cut(s) 1006, 1171, 1492, 1678
KasI GGCGCC 1 cut(s) 1677
Kzo9I GATC 7 cut(s) 162, 479, 1071, 1099, 1390, 1435, 1665
LguI GCTCTTC 1 cut(s) 1569
LmnI GCTCC 5 cut(s) 778, 1032, 1087, 1339, 1546
Lsp1109I GCAGC 3 cut(s) 189, 208, 1546
LweI GCATC 5 cut(s) 81, 87, 285, 439, 812
MaeI CTAG 3 cut(s) 374, 1031, 1158
MaeII ACGT 2 cut(s) 449, 1708
MaeIII GTNAC 2 cut(s) 356, 1709
MalI GATC 7 cut(s) 164, 481, 1073, 1101, 1392, 1437, 1667
MboI GATC 7 cut(s) 162, 479, 1071, 1099, 1390, 1435, 1665
MflI RGATCY 3 cut(s) 479, 1099, 1665
MhlI GDGCHC 2 cut(s) 1038, 1536
Mly113I GGCGCC 1 cut(s) 1678
MlyI GAGTC 2 cut(s) 257, 695
MmeI TCCRAC 2 cut(s) 229, 1693
MroXI GAANNNNTTC 2 cut(s) 25, 121
MseI TTAA 5 cut(s) 300, 317, 536, 570, 1607
MslI CAYNNNNRTG 1 cut(s) 1521
MspCI CTTAAG 1 cut(s) 569
MspI CCGG 3 cut(s) 181, 1681, 1728
MspR9I CCNGG 6 cut(s) 426, 729, 865, 1405, 1674, 1698
Mva1269I GAATGC 1 cut(s) 1144
MvaI CCWGG 6 cut(s) 426, 729, 865, 1405, 1674, 1698
MwoI GCNNNNNNNGC 7 cut(s) 282, 379, 815, 1033, 1148, 1591, 1651
NarI GGCGCC 1 cut(s) 1678
NdeI CATATG 1 cut(s) 673
NdeII GATC 7 cut(s) 162, 479, 1071, 1099, 1390, 1435, 1665
NheI GCTAGC 1 cut(s) 373
NlaIII CATG 6 cut(s) 438, 773, 791, 889, 1346, 1540
NlaIV GGNNCC 7 cut(s) 549, 1101, 1409, 1542, 1644, 1679, 1702
NmuCI GTSAC 1 cut(s) 1709
NspI RCATGY 2 cut(s) 889, 1346
NspV TTCGAA 1 cut(s) 125
PceI AGGCCT 1 cut(s) 1696
PciI ACATGT 1 cut(s) 885
PciSI GCTCTTC 1 cut(s) 1569
PctI GAATGC 1 cut(s) 1144
PdmI GAANNNNTTC 2 cut(s) 25, 121
PfeI GAWTC 4 cut(s) 322, 329, 668, 1018
PkrI GCNGC 3 cut(s) 204, 223, 1561
PleI GAGTC 2 cut(s) 257, 694
PluTI GGCGCC 1 cut(s) 1681
PpsI GAGTC 2 cut(s) 257, 694
PpuMI RGGWCCY 1 cut(s) 547
PscI ACATGT 1 cut(s) 885
PsiI TTATAA 2 cut(s) 993, 1167
Psp5II RGGWCCY 1 cut(s) 547
Psp6I CCWGG 6 cut(s) 424, 727, 863, 1403, 1672, 1696
PspGI CCWGG 6 cut(s) 424, 727, 863, 1403, 1672, 1696
PspN4I GGNNCC 7 cut(s) 549, 1101, 1409, 1542, 1644, 1679, 1702
PspPI GGNCC 3 cut(s) 485, 547, 1408
PspPPI RGGWCCY 1 cut(s) 547
PsuI RGATCY 3 cut(s) 479, 1099, 1665
RseI CAYNNNNRTG 1 cut(s) 1521
SapI GCTCTTC 1 cut(s) 1569
SaqAI TTAA 5 cut(s) 300, 317, 536, 570, 1607
SatI GCNGC 3 cut(s) 203, 222, 1560
Sau3AI GATC 7 cut(s) 162, 479, 1071, 1099, 1390, 1435, 1665
Sau96I GGNCC 3 cut(s) 485, 547, 1408
SchI GAGTC 2 cut(s) 257, 695
ScrFI CCNGG 6 cut(s) 426, 729, 865, 1405, 1674, 1698
SduI GDGCHC 2 cut(s) 1038, 1536
SfaNI GCATC 5 cut(s) 81, 87, 285, 439, 812
SfcI CTRYAG 1 cut(s) 6
SfoI GGCGCC 1 cut(s) 1679
SfuI TTCGAA 1 cut(s) 125
SinI GGWCC 3 cut(s) 485, 547, 1408
SmiMI CAYNNNNRTG 1 cut(s) 1521
SmlI CTYRAG 2 cut(s) 134, 569
SmoI CTYRAG 2 cut(s) 134, 569
SseBI AGGCCT 1 cut(s) 1696
SsiI CCGC 6 cut(s) 224, 371, 639, 1057, 1583, 1714
SspDI GGCGCC 1 cut(s) 1677
SspMI CTAG 3 cut(s) 374, 1031, 1158
StuI AGGCCT 1 cut(s) 1696
StyD4I CCNGG 6 cut(s) 424, 727, 863, 1403, 1672, 1696
StyI CCWWGG 2 cut(s) 333, 842
TaaI ACNGT 6 cut(s) 874, 926, 970, 1429, 1484, 1642
TaiI ACGT 2 cut(s) 452, 1711
TaqI TCGA 3 cut(s) 125, 161, 1074
TfiI GAWTC 4 cut(s) 322, 329, 668, 1018
Tru1I TTAA 5 cut(s) 300, 317, 536, 570, 1607
Tru9I TTAA 5 cut(s) 300, 317, 536, 570, 1607
TscAI CASTG 4 cut(s) 788, 1015, 1596, 1747
TseFI GTSAC 1 cut(s) 1709
TseI GCWGC 3 cut(s) 202, 221, 1559
Tsp45I GTSAC 1 cut(s) 1709
TspDTI ATGAA 6 cut(s) 543, 606, 660, 968, 1398, 1629
TspGWI ACGGA 3 cut(s) 105, 920, 1202
TspRI CASTG 4 cut(s) 788, 1015, 1596, 1747
Vha464I CTTAAG 1 cut(s) 569
VneI GTGCAC 1 cut(s) 1034
VpaK11BI GGWCC 3 cut(s) 485, 547, 1408
XapI RAATTY 7 cut(s) 21, 574, 598, 617, 820, 1110, 1250
XbaI TCTAGA 1 cut(s) 1157
XceI RCATGY 2 cut(s) 889, 1346
XmnI GAANNNNTTC 2 cut(s) 25, 121
XspI CTAG 3 cut(s) 374, 1031, 1158
ZraI GACGTC 1 cut(s) 1709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.