Rh5BG150800

DUF1087

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0005784
Physical Location & Seq
Forward (+)
15389880 .. 15403486
13607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG150800.1

Sequence Viewer

Length: 7236 bp
ATGAAGGATAACAGCTCGTCAACAAGTACAATGATTAACAGAAACTGGGTCTTGAAACGAAAACGCAGAAAGCTTCCTTACGGACCTGCTCTATCTAATGGCAAAGAAGACAGTTCAGCAGCATCAGAATCTCAAGGGAAGACATCTTCTTCCGCTAAACGACGGCTGACTAATGAAATTATTTCTGATCGACTTTCGTCCAAGAAGAAAGGAAACGATGGGTATTACTATGAATGTGTGGTCTGTGACCTCGGTGGTAACTTGTTGTGTTGTGATAGTTGTCCCCAAACCTATCATCTCCAGTGTCTTAATCCACCTCTTAAGCGGATTCCGAATGGGAAGTGGCAGTGCCCAAACTGCTGTCAGAAAAGTGATATGCCAGAGCCTTTAAATTATCTAGCTGATAACATTTCAAAACGAGCAAGGACAAAGATTGCCACCTCTAAGTCCAAAGCTGAAGTTAAGTCATCTGACAGAGAGAAAGTTTCGCAGATTTTTGGGAACACCATTGTTGCAAAGAAAAGATCATCAAGCAAAGGGAAAGCTCATGGAGTTAAATCCTTCGAAAAGAAACCATTCTCCCAGATAGATATATCTTCTAGCACGAAGCCCAGTCATTCATCAGCTGGCTGTTCTGTGGAGGGTATTTCATTGTCTGAGAATGTTGGGGATGAAAATAGATCTAATCTTTCCCCACCAGATGATTCCGCAGACAAAAAGTTGAGCTCTCCAGCTAAAGAGGTTTCATCTCATTCTAAAATATCAGAGACAAATGAAGAAGCTCCTGACGCATCTATGACAAATGAAGAAGCTCCGGAGGCAGCTGTGACAACTGGAGAAGCTCTGGAGGCAGCTGTGACAACTGGAGAAGCTCCGGAGGCAGCTGTGACAACTGGAGAAGCTCCGGAGGCAGCTGTGACAACTGGAGAAGCTCCTGAGGCATCTGTGCCAAATGGAGAAGCTCCTGAGGCATCTGTGACAAATGGAGAAGCTCCTGAGCCATCTGTCCTTCCTGAAGTGAAGCCTGACCCGTCTTGTGATGATGCATCTCCGCGTAAGACCATTGTTCTTGCCATCAGTGCTGCTGCTGGCAAGGCTAGAAAAAGAAAAAACAAAGGCAATAATGAGAAGAGTAAAAAGAAGCGCAGGACAGAGAAGAGGAAAACTGTCATTGATATTTCTAAACAGTCTGGATCTAAAGCAAATACCTCAAGCCCAGGGACTCGTATTCGTAAAACACTTCGTAAGCATAAATCTCTCAACCATGGGGTTTCTGCATCTTTGTCAAGGGAGGATGTCACAACCAAGGGTTCAGATGTCCAGATGAAAGACGAGGACCTTACTGAGGAAGCAAAAGACCAATTTCATAATGCAGATAAAGCCGGAAATCATGGAGTCGAAACATTAATGCAGAAGGATAGTCTTACTGCTGAACTCCTGCAGGTGGATCGGGTTTTGGGATGTCGAGTTCAAGGTAATCATGCTGCTGCTTCTTGTCACTTATCAGTGACAGCTGCCCAGGATCTGAGTTCTGATGATGCACAAGTCTCAGAAAATAATAACAGACTATCACAGGAAAATTTTGCTTGCGAAACTGTTATGGATGTTGGGGCGGCTAAAAATCTCACTGAGGGTTGTCAAGGAGTTGTTAAGGGTGTTGATGGGGATGACAGCAAGAAGGAGGATATAAGAGTGGACAAACTGCATGTGTACAGAAGGTCTATGAACAAAGAAGGTAAAAGAGCTAATTCCATGGATTTGTCTAGGAAAGATACCAAGGAGTTGGATCCTGCAGGCATAATTGATCACGATCCAAACGAATCTGCTTTAAATGCTGATGATCCAGAAAAAACAAATGAAGTAGTGACTGCAGAGAATATTGATGTCAATTTGAACAGTCATGATAAAGATAAAGAAGAGGTTCTGGAAATTTGTGAAGCGCATGTTTCTGCTGATACCAATGACAAGAGAGATGTCAATACAGAAGCTGGAACTGATATCTGTGCTGAAAACAAAAGTGAAGAGCCCACACTGGCTGAACATGCAGGTGATGGTGTTGAGACGGTATCGTATGAATTTTTAGTTAAGTGGGTAGGTAAGTCTCATATTCATAATAGCTGGGTTTCTGAATCTGAGTTAAAAGTCCTGGCGAAGAGGAAACTAGAAAACTATAAGGCAAAGTATGGAATGGCTGTTATAAATATATGCGAGGAGAGATGGAAGCAACCACAGCGGGTGATCGCTCTCCGTGGATTTAAAGATGGTTCAGGTGAAGCTTTTGTGAAATGGACTGGTTTGCCTTATGATGAATGCACTTGGGAAAGATTGGATGAGCCTGTTATGAGAAATTCTCAGAATCTGGTTGAATTATTTAGTCAGTTTGAGCACCAAACGTTGGTAAATGATGCTCTTAAAGATGATTCATCAAGAGGGAAGGTTAGCCGACAGCAAAATGAAATACTTGCTCTGACAGAGCAGCCCAAGGAACTAAAGGGAGGTTCATTGTTTCCCCATCAGCTTGAAGCACTCAATTGGTTGCGGAAGTGCTGGCATAAATCAAGAAATGTGATACTAGCTGATGAGATGGGGCTCGGTAAAACCATATCAGCTTGTGCTTTTATTTCGTCATTATATGTTGAGTTCAAAGCCACTCTACCTTGTTTAGTCTTGGTTCCACTTTCCACAATGCCTAATTGGCTTGCTGAGTTTTCATTATGGGCCCCTGAATTGAATGTCGTGGAATACCATGGGTGTGCCAAAGCAAGAGCCATGATTCGCCAGTATGAATGGCATGCTAGTGTTCCAAATGAGTTGAACAAGAAGACATCCGCTTATAAATTTAATGTTCTTTTAACTACATATGAAATGGTTCTTGCTGATTCCACACATCTTCGTGGGGTCCCTTGGGAAGTTCTCATAGTTGATGAGGGCCATCGATTGAAAAATTCAGGAAGTAGACTTTTCAGCTTGCTTAACTCGTTCTCTTTCCAACATCGTGTACTGCTGACTGGCACCCCTCTTCAGAATAACCTTGGTGAGATGTACAACTTGCTTAATTTCTTGCAGCCTGCATCATTCCCTTCCCTGTCTTCATTTGAGGAGAGGTTTAATGATCTTACAACTTCAGAAAAAGTGGAGGAATTGAAAAAACTCGTTGCTCCACATATGCTTCGTAGGCTTAAAAAGGATGCTATGCAGAATATTCCCCCAAAGACCGAACGAATGGTTCCTGTTGAGTTGTCCTCCATCCAAGCTGAATACTATCGTGCAATGTTAACAAAGAATTATCAGATATTGCGGAATATTGGGAAAGGGGTTGCACAACAATCGATGCTGAACATTGTAATGCAGTTAAGGAAAGTCTGCAATCATCCATATCTGATACCAGGCACTGAGCCTGACTGTGGGTCTGTAGAGTTCCTTCATGACATGCGGATAAAAGCTTCAGCCAAGTTGACACTGTTGCATTCTATGCTTAAGATTTTGCACAAAGAGGGTCACAGAGTCCTTATCTTTTCCCAGATGACCAAGCTCCTTGATATCCTTGAGGATTATTTGGCCATCGAATTTGGACCTAAAACATATGAGAGAGTAGATGGATCTGTTGCAGTGGCTGATCGTCAATCTGCAATTGCGCGTTTTAACCAAGACAGAAGTCGATTTGTCTTTTTGTTATCAACACGCTCTTGTGGCCTTGGGATCAATTTGGCAACTGCTGACACCGTCATTATTTATGATTCTGATTTCAACCCCCATGCTGATATTCAAGCTATGAATCGAGCACATCGAATCGGACAATCAAATAGACTTCTGGTTTATAGGCTTGTAGTTCGTGCTAGTGTTGAAGAGCGCATCTTGCAGCTTGCAAAGAAGAAACTTATGCTGGATCAGCTATTTGTGAATAAGTCAGAATCCCAAAAAGAAGTGGAAGATATTCTTAAGTGGGGAACAGAGGAACTTTTCAATGATTCTCCTGGCATGGATGGAAAAGATACAGGTGAAAATAATAGTAACAAAGATGAGGCAGTGCCAGATGTAGAGCATAAGCATAAGAGGAGGATTGGTAGCCTGGGAGATGTTTATGAAGATAAATGTACAGAAAACAGCAACAAGATTGTTTGGGATGAAACTGCGATTTTAAAGTTGCTTGACCGTGAAAATCTTCAATCTGGACTGACTGATAATGCAGAAGGAGATATGGAAAATGATATGCTTGGCTCTGTAAAGTCTATCGAATGGAATGAGGAGCCAATTGAAGAGCAGGGAGTTGAATCACCTCCTGGTGCAAGTGATGATATATGTGCTCAAAATACTGAAAGGAAAGAGGATAATGTGGTTAATGGTACAGAAGAAAATGAATGGGACAGACTCTTACGTCTTAGATGGGAGAAATATCAAAGTGAGGAGGAAGCAGCTCTTGGTCGTGGTAAGCGAATGCGGAAAGCTGTTTCTTACAGGGAAGCATATGCTGCACACCCAAGTGAAACATTAACTGAGAGTGGTGGTGGTGAAGATGAGCGTGAGCCCGAACCAGAGCCAGAGCGGGAGTACACACCCGCAGGACGAGCTCTAAAAGCAAAGTATGCTAAGCTCCGTGCTAGGCAAAAAGAACGTCTGGCTCAGAGGAATGAAATTGAAGAACCTTGTCCTAGTGAGGGATTGCCTGTTGAGTCACATCCTCAGTGTCCCATGAACACTGCCGAAGATGTTGATCAAGCGACCGGGGATCAAGCGGCTGGATTAGTTCAATTTCTCAGTGAGAAGTCTTCAGTAATTGACTTGGAGGATAACAAATTAGATGCTTCTAAAGCCAAGACTGACTCTCCCTTAAGATTGGGCAAGCTATCAAAGCATAAAAGCAGTCGCCTCGACCTTTCTGTTAATCCGCTTGACTACGCGTCTCCTGACATTTTATTTCCTAGACACCAACATCAGGGAACAAACATGACTCATTCGATGCCCCCAAATAATTTGTTACCTGTTCTGGGACTCTGTGCCCCAAATGCTAGTCAAATAGAATCATCAAAAAAGAACTCAAGGTCGAATGGCAGACGGAGAGGAGCTGGACCAGAATTTCCATTTAGTCTAGCTCCTCATTCTGGGACCTTGCCTGAAACAGAAGCAAATGGTGATGAAGCAAAGCTATCAGATGCATCCGCAGAGGCATCACAACGTTTGAAGAGTAGCATCCCAAATGGTGGCTTGCCATTTAGACCGTATCCTCCGGCTTTTCAAGGAAAAGGTTATGATCGCCCTGAAAGTTCTGGTGCCACCTTTTCTGATTTCCAAGAAAAGATGGCACTGCCCAACTTACCATTTGATGAGAAATTGCTATCAAGATTCCCGCTTTCATCTAAGAGCATGCAAAGTCCACATCTTGACTTCTTACCTAACTTGTCCTTGGGTAGCAGACTCGAAACTGTCAATGGCTCCTTGCAAGAGCTTCCAACAATGCCACTGTTTCCCAATTTAAAATTGCCCCCACAAGATGCGCCCAGATATAATCAGCTAGACAGAGAAGTCCATCCCACCTTGGGTTTGGGCCATATGCCAACTACATTTCCTTCATTATCTGATAACCACAGAAAGGTGCTGGAAAACATAATGATGAGGACTGGTTCTGCATCAAACAACTTGTTTAAGAGGAAATCAAAAGCAGATAGCTGGTCGGAAGATGAACTTGATTTCCTCTGGGTTGGTGTCCGTAGGCATGGAAGGGGCAATTGGGATGCAATGCTAAGAGACCCAAGGTTGAAATTCTCAAAGTTCAAAACTTCAGAAGATTTGTCAGCAAGGTGGGAGGAGGAGCAACTCAAGCTTTTAGAAGGGTCAGCTTTTCCAGTGTCAAAATCATCCAGAAAGACTCCCAAGTCCTCGCAGTTTCCAAGCATATCTGATGGAATGATGGCCAGGGCACTGCATGGAAGTAGACTTGTTACACCTCCAAAGTTTCAATCCCATTTGACGGACATGAAGTTGGGTTTTACTGATCTTACATCTGGCTTTCCACATTTTGAAGCATCAGATAGACTTGGTTTGCAAAATGAGCAATGCCCTCCTATTCCAACTTGGTTTCATGACAAATTCCGGGGCAATTTTGCCAGAGATTCTGCTGCTGGACCTTCAGACAGACCAGGGACATCTTCCAATGTTTCCATGGAGCAGCCATTTGTTGTCACTTCTTTTGGAAGCAGTTGCTTGGGTTCATTAGGTTTGAATCCCCCAAGCAGCTATGATTTGCAGCAGAAGGAAAATGAACAGGGTCCCTATAACTATGGGAAGTTGCCTAGTCTTCTGGATAGATCACTGAATGCTCTGCGTGATATGAATAATAATTTTGCAAGAGGTGAACCCAGTGCAGGATTCTTTCCTGATCCCAGGAGAGGTTTTTTAAAGGATGAAGATGTTGCTGGAAGTAGTTCATCAAAGGACAAGCTACCTCATTGGCTACGGCAAGCTGTAAGTGCTCCTGCCAAACCCCCAGAACCTGACCTTCCCCCTACAGTATCGGCAATAGCTCGGTCAGTTCGATTGTTATATAGGGAGGAAGAGCCAACCATTCCTCCCTTTGTGATTCCAGGCCCACCTCCTTCACTACCAAAGGATCCAAGACGACGGCTGAAGAAGAAAAGGAAACAGAAGTTACATATCTTTAGGCGAATTTCCCAAGACATTGCCGGAAGCAGCCACTTAAGTGAAAATGCTTCAAGCTCCATTCCTGTGGCCCCATCATTTCCCTTGCTTTCACAATCAATGGCACCACCTCCAGGCTTTCCACCAATGGAATCTGACCACAATATGCCTCGGAGTTTAAATATGTTAAACCCATTAGCCTCGTTGCCACATCTGAATCAACAGATCAAAACAACCATGGGGCTGTCTCCTTCCCCTGAAGTTCTTCAACTGGTAGCATCCTGTGTTGCTCCAGGTCCACATCTACCAGCAGTTTCTGGCATGACAAGCTCAAGCGTCCCTGACTTGAAGCCATCATTGCCAGATTCAGCTGGCCAAGTAGGACTCTTGGACTCGCAAGCTACATTGGCAAAAGATGAGGCTAAGCCGGGTTCACCTCTCAAGGAGTGCAATTCACTCCCAAAAGATAGAAAATGTGATACTGAAAGTGGGGATTCCAGCAAGACTCGGTCAGATCCCAATAGAACTGAGCGTCCCGATGCTGAGGAAGTATCTTCTGAGGGCACCGTCTCAGATCACCCTCTGAGTGACCGGGAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006323 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007289 GO:0007399 GO:0007417 GO:0007420 GO:0008150 GO:0008152 GO:0008213 GO:0008285 GO:0009506 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0016581 GO:0016604 GO:0016607 GO:0017053 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019953 GO:0021895 GO:0021953 GO:0022008 GO:0022412 GO:0022414 GO:0023051 GO:0023056 GO:0030054 GO:0030154 GO:0030182 GO:0030900 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034728 GO:0034968 GO:0035064 GO:0035092 GO:0035093 GO:0036211 GO:0042127 GO:0042393 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043486 GO:0043543 GO:0043933 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0045165 GO:0048232 GO:0048468 GO:0048513 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048609 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051704 GO:0055044 GO:0060255 GO:0060322 GO:0060850 GO:0061628 GO:0065007 GO:0070013 GO:0070603 GO:0070734 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0098532 GO:0140030 GO:0140034 GO:1901564 GO:1901796 GO:1901798 GO:1902494 GO:1902531 GO:1902533 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05165 ko05203 map05165 map05203
Pfam Domains
Protein Families
Chromo DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

2411

Amino Acids

266.7

Weight (kDa)

6.25

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 79 - 120 4.2e-09 PHD-finger
Chromo PF00385 742 - 792 2.4e-08 Chromo (CHRromatin Organisation MOdifier) domain
ResIII PF04851 835 - 1006 4.4e-10 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 838 - 1127 2.9e-79 SNF2-related domain
HDA2-3 PF11496 1075 - 1292 1.5e-11 Class II histone deacetylase complex subunits 2 and 3
Helicase_C PF00271 1151 - 1265 1.4e-22 Helicase conserved C-terminal domain
DUF1087 PF06465 1446 - 1487 2.4e-06 CHD subfamily II, DUF1087
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2198, 2835
AarI CACCTGC 2 cut(s) 1432, 2036
AasI GACNNNNNNGTC 3 cut(s) 4374, 5519, 5869
Acc36I ACCTGC 3 cut(s) 94, 1432, 2036
AccB1I GGYRCC 4 cut(s) 3011, 5267, 6757, 7196
AccB7I CCANNNNNTGG 2 cut(s) 2395, 5198
AccBSI CCGCTC 1 cut(s) 4543
AccI GTMKAC 2 cut(s) 2956, 5929
AccII CGCG 3 cut(s) 1054, 3637, 4898
AccIII TCCGGA 3 cut(s) 814, 874, 904
AclI AACGTT 2 cut(s) 2393, 5173
AcoI YGGCCR 3 cut(s) 3558, 5907, 7006
AfaI GTAC 7 cut(s) 28, 1712, 3000, 3044, 4096, 4345, 4550
AflII CTTAAG 5 cut(s) 320, 3476, 3938, 4828, 6691
AflIII ACRYGT 1 cut(s) 4896
AhdI GACNNNNNGTC 2 cut(s) 3406, 4897
AjuI GAANNNNNNNTTGG 4 cut(s) 4401, 4433, 5707, 5739
AleI CACNNNNGTG 2 cut(s) 4479, 6693
AloI GAACNNNNNNTCC 6 cut(s) 1452, 1484, 5670, 5702, 7150, 7182
Alw21I GWGCWC 6 cut(s) 728, 2388, 3784, 4306, 4570, 6469
Alw26I GTCTC 8 cut(s) 761, 1552, 2054, 2106, 4905, 5736, 6885, 7207
AlwNI CAGNNNCTG 8 cut(s) 45, 1525, 1988, 2359, 3392, 3614, 6488, 6950
Aor13HI TCCGGA 3 cut(s) 814, 874, 904
AoxI GGCC 9 cut(s) 2718, 2929, 3558, 3691, 5542, 5907, 6580, 6723, 7006
ApaI GGGCCC 1 cut(s) 2722
ArsI GACNNNNNNTTYG 2 cut(s) 4597, 4629
AseI ATTAAT 1 cut(s) 1406
Asp700I GAANNNNTTC 7 cut(s) 575, 1920, 2868, 3933, 4161, 6418, 6897
AspLEI GCGC 5 cut(s) 1146, 1942, 3637, 3852, 5494
AsuC2I CCSGG 4 cut(s) 4723, 6089, 7062, 7226
AsuII TTCGAA 1 cut(s) 564
AvaII GGWCC 9 cut(s) 83, 1336, 2899, 3572, 5066, 5103, 6119, 6263, 6929
AxyI CCTNAGG 2 cut(s) 936, 966
BaeGI GKGCMC 5 cut(s) 353, 2722, 4999, 5917, 7199
BalI TGGCCA 3 cut(s) 3560, 5909, 7008
BamHI GGATCC 2 cut(s) 1786, 6604
BanI GGYRCC 4 cut(s) 3011, 5267, 6757, 7196
BanII GRGCYC 6 cut(s) 728, 2028, 2592, 2722, 4527, 4570
BarI GAAGNNNNNNTAC 2 cut(s) 3405, 3437
BbsI GAAGAC 6 cut(s) 114, 146, 2828, 3081, 4758, 6284
Bbv12I GWGCWC 6 cut(s) 728, 2388, 3784, 4306, 4570, 6469
BbvCI CCTCAGC 1 cut(s) 7176
BceAI ACGGC 3 cut(s) 179, 6467, 6632
BcgI CGANNNNNNTGC 6 cut(s) 1430, 1464, 3309, 3343, 4849, 4883
BciVI GTATCC 1 cut(s) 5229
BclI TGATCA 2 cut(s) 1804, 4711
BcnI CCSGG 4 cut(s) 4723, 6089, 7062, 7226
BcoDI GTCTC 8 cut(s) 761, 1552, 2054, 2106, 4905, 5736, 6885, 7207
BfmI CTRYAG 5 cut(s) 1439, 1791, 1869, 3411, 6501
BfrI CTTAAG 5 cut(s) 320, 3476, 3938, 4828, 6691
BfuAI ACCTGC 3 cut(s) 94, 1432, 2036
BfuI GTATCC 1 cut(s) 5229
BglI GCCNNNNNGGC 1 cut(s) 2695
BglII AGATCT 1 cut(s) 680
BlpI GCTNAGC 2 cut(s) 4587, 7056
Bme18I GGWCC 9 cut(s) 83, 1336, 2899, 3572, 5066, 5103, 6119, 6263, 6929
BmeRI GACNNNNNGTC 2 cut(s) 3406, 4897
BmrI ACTGGG 3 cut(s) 55, 606, 6348
BmuI ACTGGG 3 cut(s) 55, 606, 6348
BoxI GACNNNNGTC 2 cut(s) 196, 3654
BpiI GAAGAC 6 cut(s) 114, 146, 2828, 3081, 4758, 6284
BplI GAGNNNNNCTC 4 cut(s) 2335, 2367, 3227, 3259
BpmI CTGGAG 9 cut(s) 284, 714, 855, 866, 885, 915, 945, 6750, 6909
Bpu10I CCTNAGC 2 cut(s) 996, 7176
Bpu1102I GCTNAGC 2 cut(s) 4587, 7056
Bpu14I TTCGAA 1 cut(s) 564
BpuEI CTTGAG 7 cut(s) 117, 1195, 3566, 5020, 5798, 6949, 7058
BpuMI CCSGG 4 cut(s) 4723, 6089, 7062, 7226
Bsa29I ATCGAT 2 cut(s) 2935, 3329
BsaBI GATNNNNATC 2 cut(s) 1809, 4710
BsaI GGTCTC 1 cut(s) 5736
BsaWI WCCGGW 3 cut(s) 814, 874, 904
BsaXI ACNNNNNCTCC 6 cut(s) 4048, 4078, 4807, 4837, 6547, 6577
Bse21I CCTNAGG 2 cut(s) 936, 966
Bse3DI GCAATG 5 cut(s) 3276, 5739, 6056, 6672, 6989
Bse8I GATNNNNATC 2 cut(s) 1809, 4710
BseAI TCCGGA 3 cut(s) 814, 874, 904
BseCI ATCGAT 2 cut(s) 2935, 3329
BseJI GATNNNNATC 2 cut(s) 1809, 4710
BseMI GCAATG 5 cut(s) 3276, 5739, 6056, 6672, 6989
BseRI GAGGAG 9 cut(s) 2225, 3113, 4069, 4259, 4418, 5073, 5082, 5816, 5819
BseSI GKGCMC 5 cut(s) 353, 2722, 4999, 5917, 7199
BseYI CCCAGC 1 cut(s) 2118
BsgI GTGCAG 2 cut(s) 4455, 6378
Bsh1236I CGCG 3 cut(s) 1054, 3637, 4898
Bsh1285I CGRYCG 1 cut(s) 4722
BshFI GGCC 9 cut(s) 2720, 2931, 3560, 3693, 5544, 5909, 6582, 6725, 7008
BshNI GGYRCC 4 cut(s) 3011, 5267, 6757, 7196
BshVI ATCGAT 2 cut(s) 2935, 3329
BsiEI CGRYCG 1 cut(s) 4722
BsiHKAI GWGCWC 6 cut(s) 728, 2388, 3784, 4306, 4570, 6469
BsmAI GTCTC 8 cut(s) 761, 1552, 2054, 2106, 4905, 5736, 6885, 7207
BsmBI CGTCTC 3 cut(s) 2054, 4905, 7207
BsmI GAATGC 4 cut(s) 2315, 3466, 4440, 6316
BsnI GGCC 9 cut(s) 2720, 2931, 3560, 3693, 5544, 5909, 6582, 6725, 7008
Bso31I GGTCTC 1 cut(s) 5736
Bsp119I TTCGAA 1 cut(s) 564
Bsp120I GGGCCC 1 cut(s) 2718
Bsp13I TCCGGA 3 cut(s) 814, 874, 904
Bsp1407I TGTACA 3 cut(s) 1710, 3042, 4094
Bsp1720I GCTNAGC 2 cut(s) 4587, 7056
Bsp19I CCATGG 5 cut(s) 1264, 1752, 2746, 6156, 6870
BspANI GGCC 9 cut(s) 2720, 2931, 3560, 3693, 5544, 5909, 6582, 6725, 7008
BspDI ATCGAT 2 cut(s) 2935, 3329
BspEI TCCGGA 3 cut(s) 814, 874, 904
BspFNI CGCG 3 cut(s) 1054, 3637, 4898
BspHI TCATGA 3 cut(s) 1900, 3424, 6076
BspMAI CTGCAG 3 cut(s) 1443, 1795, 1873
BspMI ACCTGC 3 cut(s) 94, 1432, 2036
BspQI GCTCTTC 4 cut(s) 2016, 3840, 4251, 6543
BspT104I TTCGAA 1 cut(s) 564
BspT107I GGYRCC 4 cut(s) 3011, 5267, 6757, 7196
BspTI CTTAAG 5 cut(s) 320, 3476, 3938, 4828, 6691
BspTNI GGTCTC 1 cut(s) 5736
BsrBI CCGCTC 1 cut(s) 4543
BsrDI GCAATG 5 cut(s) 3276, 5739, 6056, 6672, 6989
BsrGI TGTACA 3 cut(s) 1710, 3042, 4094
BstAFI CTTAAG 5 cut(s) 320, 3476, 3938, 4828, 6691
BstAPI GCANNNNNTGC 3 cut(s) 3472, 4469, 4583
BstAUI TGTACA 3 cut(s) 1710, 3042, 4094
BstBI TTCGAA 1 cut(s) 564
BstDSI CCRYGG 6 cut(s) 1264, 1752, 2248, 2746, 6156, 6870
BstENI CCTNNNNNAGG 1 cut(s) 1343
BstFNI CGCG 3 cut(s) 1054, 3637, 4898
BstHHI GCGC 5 cut(s) 1146, 1942, 3637, 3852, 5494
BstMAI GTCTC 8 cut(s) 761, 1552, 2054, 2106, 4905, 5736, 6885, 7207
BstMCI CGRYCG 1 cut(s) 4722
BstNSI RCATGY 6 cut(s) 1709, 1946, 2045, 2795, 3433, 5365
BstPAI GACNNNNGTC 2 cut(s) 196, 3654
BstSFI CTRYAG 5 cut(s) 1439, 1791, 1869, 3411, 6501
BstSLI GKGCMC 5 cut(s) 353, 2722, 4999, 5917, 7199
BstUI CGCG 3 cut(s) 1054, 3637, 4898
BstV2I GAAGAC 6 cut(s) 114, 146, 2828, 3081, 4758, 6284
BstX2I RGATCY 7 cut(s) 680, 1193, 1522, 1786, 3599, 6604, 7147
BstXI CCANNNNNNTGG 2 cut(s) 1783, 6721
BstYI RGATCY 7 cut(s) 680, 1193, 1522, 1786, 3599, 6604, 7147
Bsu15I ATCGAT 2 cut(s) 2935, 3329
Bsu36I CCTNAGG 2 cut(s) 936, 966
BsuI GTATCC 1 cut(s) 5229
BsuRI GGCC 9 cut(s) 2720, 2931, 3560, 3693, 5544, 5909, 6582, 6725, 7008
BsuTUI ATCGAT 2 cut(s) 2935, 3329
BtgI CCRYGG 6 cut(s) 1264, 1752, 2248, 2746, 6156, 6870
BtsI GCAGTG 6 cut(s) 353, 3615, 4032, 4695, 5300, 5915
BveI ACCTGC 3 cut(s) 94, 1432, 2036
CaiI CAGNNNCTG 8 cut(s) 45, 1525, 1988, 2359, 3392, 3614, 6488, 6950
CciI TCATGA 3 cut(s) 1900, 3424, 6076
CfoI GCGC 5 cut(s) 1146, 1942, 3637, 3852, 5494
ClaI ATCGAT 2 cut(s) 2935, 3329
CseI GACGC 4 cut(s) 797, 4887, 6958, 7154
Csp6I GTAC 7 cut(s) 27, 1711, 2999, 3043, 4095, 4344, 4549
CviQI GTAC 7 cut(s) 27, 1711, 2999, 3043, 4095, 4344, 4549
DraI TTTAAA 7 cut(s) 390, 1830, 2257, 4140, 5472, 6393, 6813
DrdI GACNNNNNNGTC 3 cut(s) 4374, 5519, 5869
DriI GACNNNNNGTC 2 cut(s) 3406, 4897
DseDI GACNNNNNNGTC 3 cut(s) 4374, 5519, 5869
EaeI YGGCCR 3 cut(s) 3558, 5907, 7006
Eam1105I GACNNNNNGTC 2 cut(s) 3406, 4897
Ecl136II GAGCTC 2 cut(s) 726, 4568
Eco24I GRGCYC 6 cut(s) 728, 2028, 2592, 2722, 4527, 4570
Eco31I GGTCTC 1 cut(s) 5736
Eco32I GATATC 2 cut(s) 1999, 3541
Eco47I GGWCC 9 cut(s) 83, 1336, 2899, 3572, 5066, 5103, 6119, 6263, 6929
Eco53kI GAGCTC 2 cut(s) 726, 4568
Eco81I CCTNAGG 2 cut(s) 936, 966
EcoICRI GAGCTC 2 cut(s) 726, 4568
EcoNI CCTNNNNNAGG 1 cut(s) 1343
EcoO109I RGGNCCY 5 cut(s) 1336, 2719, 2899, 5103, 6263
EcoRV GATATC 2 cut(s) 1999, 3541
EcoT22I ATGCAT 2 cut(s) 1048, 5155
EcoT38I GRGCYC 6 cut(s) 728, 2028, 2592, 2722, 4527, 4570
Esp3I CGTCTC 3 cut(s) 2054, 4905, 7207
FalI AAGNNNNNCTT 6 cut(s) 3921, 3953, 4401, 4433, 5664, 5696
FauI CCCGC 4 cut(s) 2226, 4536, 4564, 5352
FauNDI CATATG 5 cut(s) 2860, 3165, 3583, 4465, 5547
FbaI TGATCA 2 cut(s) 1804, 4711
FblI GTMKAC 2 cut(s) 2956, 5929
FriOI GRGCYC 6 cut(s) 728, 2028, 2592, 2722, 4527, 4570
GlaI GCGC 5 cut(s) 1145, 1941, 3636, 3851, 5493
GsaI CCCAGC 1 cut(s) 2122
GsuI CTGGAG 9 cut(s) 284, 714, 855, 866, 885, 915, 945, 6750, 6909
HaeIII GGCC 9 cut(s) 2720, 2931, 3560, 3693, 5544, 5909, 6582, 6725, 7008
HgaI GACGC 4 cut(s) 797, 4887, 6958, 7154
HhaI GCGC 5 cut(s) 1146, 1942, 3637, 3852, 5494
Hin6I GCGC 5 cut(s) 1144, 1940, 3635, 3850, 5492
HinP1I GCGC 5 cut(s) 1144, 1940, 3635, 3850, 5492
HincII GTYRAC 3 cut(s) 21, 3276, 3456
HindII GTYRAC 3 cut(s) 21, 3276, 3456
HindIII AAGCTT 4 cut(s) 71, 2274, 3441, 5816
HpaI GTTAAC 1 cut(s) 3276
Hpy99I CGWCG 2 cut(s) 165, 6618
HpyCH4IV ACGT 4 cut(s) 2393, 4375, 4612, 5173
HpySE526I ACGT 4 cut(s) 2393, 4375, 4612, 5173
HspAI GCGC 5 cut(s) 1144, 1940, 3635, 3850, 5492
KflI GGGWCCC 2 cut(s) 2899, 6263
Kpn2I TCCGGA 3 cut(s) 814, 874, 904
Ksp22I TGATCA 2 cut(s) 1804, 4711
KspAI GTTAAC 1 cut(s) 3276
LguI GCTCTTC 4 cut(s) 2016, 3840, 4251, 6543
MaeII ACGT 4 cut(s) 2393, 4375, 4612, 5173
MbiI CCGCTC 1 cut(s) 4543
MfeI CAATTG 4 cut(s) 2530, 3630, 4251, 5722
MflI RGATCY 7 cut(s) 680, 1193, 1522, 1786, 3599, 6604, 7147
MlsI TGGCCA 3 cut(s) 3560, 5909, 7008
MluI ACGCGT 1 cut(s) 4896
MluNI TGGCCA 3 cut(s) 3560, 5909, 7008
MmeI TCCRAC 5 cut(s) 1764, 3013, 5471, 5649, 6089
Mox20I TGGCCA 3 cut(s) 3560, 5909, 7008
Mph1103I ATGCAT 2 cut(s) 1048, 5155
MroI TCCGGA 3 cut(s) 814, 874, 904
MroXI GAANNNNTTC 7 cut(s) 575, 1920, 2868, 3933, 4161, 6418, 6897
MscI TGGCCA 3 cut(s) 3560, 5909, 7008
MslI CAYNNNNRTG 9 cut(s) 2046, 2751, 2796, 2892, 3344, 4479, 5606, 6693, 6719
Msp20I TGGCCA 3 cut(s) 3560, 5909, 7008
MspA1I CMGCKG 8 cut(s) 626, 824, 854, 884, 914, 1514, 2233, 7004
MspCI CTTAAG 5 cut(s) 320, 3476, 3938, 4828, 6691
MunI CAATTG 4 cut(s) 2530, 3630, 4251, 5722
Mva1269I GAATGC 4 cut(s) 2315, 3466, 4440, 6316
MvnI CGCG 3 cut(s) 1054, 3637, 4898
NciI CCSGG 4 cut(s) 4723, 6089, 7062, 7226
NcoI CCATGG 5 cut(s) 1264, 1752, 2746, 6156, 6870
NdeI CATATG 5 cut(s) 2860, 3165, 3583, 4465, 5547
NsiI ATGCAT 2 cut(s) 1048, 5155
NspI RCATGY 6 cut(s) 1709, 1946, 2045, 2795, 3433, 5365
NspV TTCGAA 1 cut(s) 564
OliI CACNNNNGTG 2 cut(s) 4479, 6693
PaeI GCATGC 2 cut(s) 2795, 5365
PagI TCATGA 3 cut(s) 1900, 3424, 6076
PaqCI CACCTGC 2 cut(s) 1432, 2036
PasI CCCWGGG 1 cut(s) 1217
PciSI GCTCTTC 4 cut(s) 2016, 3840, 4251, 6543
PcsI WCGNNNNNNNCGW 4 cut(s) 1815, 3784, 4429, 6526
PctI GAATGC 4 cut(s) 2315, 3466, 4440, 6316
PdmI GAANNNNTTC 7 cut(s) 575, 1920, 2868, 3933, 4161, 6418, 6897
PflFI GACNNNGTC 2 cut(s) 3722, 7141
PflMI CCANNNNNTGG 2 cut(s) 2395, 5198
PpuMI RGGWCCY 4 cut(s) 1336, 2899, 5103, 6263
PshAI GACNNNNGTC 2 cut(s) 196, 3654
PshBI ATTAAT 1 cut(s) 1406
PsiI TTATAA 2 cut(s) 2198, 2835
Psp124BI GAGCTC 2 cut(s) 728, 4570
Psp1406I AACGTT 2 cut(s) 2393, 5173
Psp5II RGGWCCY 4 cut(s) 1336, 2899, 5103, 6263
PspFI CCCAGC 1 cut(s) 2118
PspOMI GGGCCC 1 cut(s) 2718
PspPPI RGGWCCY 4 cut(s) 1336, 2899, 5103, 6263
PstI CTGCAG 3 cut(s) 1443, 1795, 1873
PstNI CAGNNNCTG 8 cut(s) 45, 1525, 1988, 2359, 3392, 3614, 6488, 6950
PsuI RGATCY 7 cut(s) 680, 1193, 1522, 1786, 3599, 6604, 7147
PsyI GACNNNGTC 2 cut(s) 3722, 7141
PvuII CAGCTG 7 cut(s) 626, 824, 854, 884, 914, 1514, 7004
RsaI GTAC 7 cut(s) 28, 1712, 3000, 3044, 4096, 4345, 4550
RsaNI GTAC 7 cut(s) 27, 1711, 2999, 3043, 4095, 4344, 4549
RseI CAYNNNNRTG 9 cut(s) 2046, 2751, 2796, 2892, 3344, 4479, 5606, 6693, 6719
SacI GAGCTC 2 cut(s) 728, 4570
SapI GCTCTTC 4 cut(s) 2016, 3840, 4251, 6543
SbfI CCTGCAGG 2 cut(s) 1443, 1795
SdaI CCTGCAGG 2 cut(s) 1443, 1795
SfcI CTRYAG 5 cut(s) 1439, 1791, 1869, 3411, 6501
SfuI TTCGAA 1 cut(s) 564
SinI GGWCC 9 cut(s) 83, 1336, 2899, 3572, 5066, 5103, 6119, 6263, 6929
SmiMI CAYNNNNRTG 9 cut(s) 2046, 2751, 2796, 2892, 3344, 4479, 5606, 6693, 6719
SphI GCATGC 2 cut(s) 2795, 5365
Sse8387I CCTGCAGG 2 cut(s) 1443, 1795
SspI AATATT 3 cut(s) 1879, 3202, 3304
SstI GAGCTC 2 cut(s) 728, 4570
TaiI ACGT 4 cut(s) 2396, 4378, 4615, 5176
TaqII GACCGA 3 cut(s) 3230, 6510, 7131
TatI WGTACW 6 cut(s) 26, 1710, 2998, 3042, 4094, 4548
TauI GCSGC 2 cut(s) 1616, 4736
TspGWI ACGGA 6 cut(s) 96, 2237, 4583, 5068, 5693, 5981
Tth111I GACNNNGTC 2 cut(s) 3722, 7141
Van91I CCANNNNNTGG 2 cut(s) 2395, 5198
Vha464I CTTAAG 5 cut(s) 320, 3476, 3938, 4828, 6691
VpaK11BI GGWCC 9 cut(s) 83, 1336, 2899, 3572, 5066, 5103, 6119, 6263, 6929
VspI ATTAAT 1 cut(s) 1406
XagI CCTNNNNNAGG 1 cut(s) 1343
XceI RCATGY 6 cut(s) 1709, 1946, 2045, 2795, 3433, 5365
XcmI CCANNNNNNNNNTGG 2 cut(s) 5536, 6154
XmiI GTMKAC 2 cut(s) 2956, 5929
XmnI GAANNNNTTC 7 cut(s) 575, 1920, 2868, 3933, 4161, 6418, 6897
Zsp2I ATGCAT 2 cut(s) 1048, 5155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.