Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002631

Physical Location & Seq

Genomic Coordinates Reverse (-)

18270286 .. 18273263

Gene Structure 2978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G45170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGAAATCGCTTCTTGTTCAATTCTTAACAATCTTCAAATTTCTTGTACAAAGACTTCTATTTTCACTCAGTATTTGAGCGAGCGTTCTTCACACGACACTGGAAGACGCAATTTCTTGCCTTTTTCAAATTTCCCTGGAAAATCTCAGATTCTCGGAAAATGCTTGCGATTGCAGAGATTCTCTTCGATTTGCTTATCAGCTAGCAGAGAAGACGTAAACCCATCTGAAGAATTCGCTGTGATACTTGAGGTTGATAGGGTTATGATTGATACATGGTCAAGTAATCGCCAAGCGTTCAATGTAGCTTTTCAAAAGCTTGGGCTAGATTGTGCAAATTGGCCTGAACCAGTTTATTCAGACTTGTTGAGAAAAGGTGCTGCTGATGAAGAGAAAATGTTGCTTTTGTATTTCAACCAGATTGGTTGGCCTTCGTCGTTGCCAACCAGTGAGAAAGCAAGTTTTGTAAAGAGTGTATTGCGAGAAAAGAAAAATGCAATGGATGAGTTTCTCATATCGAAAAGCTTACCTCTGAGATCTGGAGTGCAAGAATTTATCGATAATGCATACGCGGAGAAAGTACCGGTTGCTATCGTAACAGCCTACTGCAAGAGTGGAGACAAAGTAGCCCTATCCATTGTCGAGATGCTTGGGCAAGAAAGACTTCCAAATGTGAAGGTTATCGGAGACAATGAGGTAGAACAGAGTATGTATGGACAACTTGTTCTTGGGAAAGGAGTTTCTTCAAGTCTAGAGGAGCAACTAGTGAAGGAAGTAAAAAAAGCAGCGTCCGCTGAGAAACAGAGGATAGCAGAAGAAGTTGCATCAATGCTAAAGCTTAGTGTTGATATTGACACAACCTCATCTGAGAGATTGGAAAAGATTGTTGTTGCATTGCGTGCTGCTGCGGAACACATAGGATTACCTGTAAATAACTGTGTACTTGTTGCTGGTAGTCAACCTGGAGTTTCTGCTGCAAAGATGATAGGCATGCCGTGTGTAGTCATGCGAAGCAGTTTAACGGCAAGAGGTGAGTTTCCATCGGCCAAAGGTGTAATGGATGGGTTTGGAGGTGCAGACCTAACAATCCCAAAACTTAGGAACAAGATCAAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

372

Amino Acids

40.74

Weight (kDa)

8.02

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45170 AT5G45170
fragaria_vesca	FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870
malus_domestica	MD10G1237500.v1.1 MD10G1237600.v1.1 MD10G1238000.v1.1
prunus_persica	Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1
pyrus_communis	pycom10g19890 pycom10g19900 pycom10g19910
rosa_chinensis	RchiOBHm_Chr5g0019301 RchiOBHm_Chr5g0019331 RchiOBHm_Chr5g0019341
rosa_laevigata	RLG00000032436 RLG00000032439
rosa_multiflora	Rmu_sc0002141.1_g000019 Rmu_sc0002759.1_g000029 Rmu_sc0005292.1_g000001 Rmu_sc0005292.1_g000024
rosa_roxburghii	Rroxscaffold_1G00058680 Rroxscaffold_1G00058690 Rroxscaffold_1G00074220 Rroxscaffold_1G00074230
rosa_rugosa	Rorug01G0008700 Rorug05G0049500 Rorug05G0050700
rosa_samantha	Rh5AG140600 Rh5BG139600 Rh5CG150900 Rh5CG151300 Rh5DG140100 Rh5DG140500
rosa_wichuraiana	Rw5G012500 Rw5G012520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	572
AciI	CCGC	3 cut(s)	572, 792, 908
AcoI	YGGCCR	1 cut(s)	1044
AcsI	RAATTY	4 cut(s)	39, 130, 233, 551
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	3 cut(s)	49, 582, 942
AgeI	ACCGGT	1 cut(s)	583
AgsI	TTSAA	7 cut(s)	21, 38, 129, 301, 314, 415, 747
AhlI	ACTAGT	1 cut(s)	763
AjnI	CCWGG	2 cut(s)	136, 961
AloI	GAACNNNNNNTCC	2 cut(s)	708, 740
AluBI	AGCT	5 cut(s)	203, 308, 319, 525, 838
AluI	AGCT	5 cut(s)	203, 308, 319, 525, 838
Alw26I	GTCTC	2 cut(s)	612, 681
AoxI	GGCC	3 cut(s)	341, 428, 1044
ApeKI	GCWGC	5 cut(s)	380, 785, 902, 905, 974
ApoI	RAATTY	4 cut(s)	39, 130, 233, 551
AsiGI	ACCGGT	1 cut(s)	583
Asp700I	GAANNNNTTC	1 cut(s)	663
AsuHPI	GGTGA	1 cut(s)	1043
AsuNHI	GCTAGC	1 cut(s)	203
BarI	GAAGNNNNNNTAC	2 cut(s)	40, 72
BbsI	GAAGAC	2 cut(s)	112, 219
BbvI	GCAGC	5 cut(s)	367, 797, 889, 892, 961
BccI	CCATC	3 cut(s)	232, 1048, 1055
BceAI	ACGGC	2 cut(s)	979, 1038
BciT130I	CCWGG	2 cut(s)	138, 963
BcoDI	GTCTC	2 cut(s)	612, 681
BcuI	ACTAGT	1 cut(s)	763
BfaI	CTAG	4 cut(s)	204, 326, 752, 764
BglII	AGATCT	1 cut(s)	536
BisI	GCNGC	5 cut(s)	381, 786, 903, 906, 975
BlsI	GCNGC	5 cut(s)	382, 787, 904, 907, 976
Bme1390I	CCNGG	2 cut(s)	138, 963
BmrFI	CCNGG	2 cut(s)	138, 963
BmsI	GCATC	2 cut(s)	636, 833
BmtI	GCTAGC	1 cut(s)	207
BpiI	GAAGAC	2 cut(s)	112, 219
BpmI	CTGGAG	2 cut(s)	561, 984
BpuEI	CTTGAG	1 cut(s)	269
Bsa29I	ATCGAT	1 cut(s)	558
BsaJI	CCNNGG	1 cut(s)	136
BsaWI	WCCGGW	1 cut(s)	583
BsaXI	ACNNNNNCTCC	2 cut(s)	609, 639
Bse118I	RCCGGY	1 cut(s)	583
Bse1I	ACTGG	3 cut(s)	106, 350, 447
Bse3DI	GCAATG	2 cut(s)	504, 893
BseBI	CCWGG	2 cut(s)	138, 963
BseCI	ATCGAT	1 cut(s)	558
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	2 cut(s)	508, 1066
BseMI	GCAATG	2 cut(s)	504, 893
BseMII	CTCAG	5 cut(s)	83, 161, 524, 786, 858
BseNI	ACTGG	3 cut(s)	106, 350, 447
BseRI	GAGGAG	1 cut(s)	770
BseXI	GCAGC	5 cut(s)	367, 797, 889, 892, 961
BsgI	GTGCAG	1 cut(s)	1095
Bsh1236I	CGCG	1 cut(s)	572
BshFI	GGCC	3 cut(s)	343, 430, 1046
BshTI	ACCGGT	1 cut(s)	583
BshVI	ATCGAT	1 cut(s)	558
BsiSI	CCGG	1 cut(s)	584
BsmAI	GTCTC	2 cut(s)	612, 681
BsnI	GGCC	3 cut(s)	343, 430, 1046
Bsp1407I	TGTACA	1 cut(s)	47
Bsp143I	GATC	2 cut(s)	536, 1107
BspACI	CCGC	3 cut(s)	572, 792, 908
BspANI	GGCC	3 cut(s)	343, 430, 1046
BspCNI	CTCAG	5 cut(s)	82, 160, 525, 787, 859
BspDI	ATCGAT	1 cut(s)	558
BspFNI	CGCG	1 cut(s)	572
BspOI	GCTAGC	1 cut(s)	207
BsrDI	GCAATG	2 cut(s)	504, 893
BsrFI	RCCGGY	1 cut(s)	583
BsrGI	TGTACA	1 cut(s)	47
BsrI	ACTGG	3 cut(s)	106, 350, 447
BssAI	RCCGGY	1 cut(s)	583
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	2 cut(s)	536, 1107
Bst2UI	CCWGG	2 cut(s)	138, 963
Bst4CI	ACNGT	1 cut(s)	938
Bst6I	CTCTTC	2 cut(s)	190, 384
BstAPI	GCANNNNNTGC	1 cut(s)	899
BstAUI	TGTACA	1 cut(s)	47
BstC8I	GCNNGC	5 cut(s)	83, 167, 205, 900, 992
BstDEI	CTNAG	7 cut(s)	69, 147, 533, 795, 839, 867, 1097
BstF5I	GGATG	2 cut(s)	508, 1066
BstFNI	CGCG	1 cut(s)	572
BstKTI	GATC	2 cut(s)	539, 1110
BstMAI	GTCTC	2 cut(s)	612, 681
BstMBI	GATC	2 cut(s)	536, 1107
BstMWI	GCNNNNNNNGC	2 cut(s)	791, 899
BstNI	CCWGG	2 cut(s)	138, 963
BstNSI	RCATGY	1 cut(s)	994
BstSCI	CCNGG	2 cut(s)	136, 961
BstUI	CGCG	1 cut(s)	572
BstV1I	GCAGC	5 cut(s)	367, 797, 889, 892, 961
BstV2I	GAAGAC	2 cut(s)	112, 219
BstX2I	RGATCY	1 cut(s)	536
BstYI	RGATCY	1 cut(s)	536
Bsu15I	ATCGAT	1 cut(s)	558
BsuRI	GGCC	3 cut(s)	343, 430, 1046
BsuTUI	ATCGAT	1 cut(s)	558
BtsCI	GGATG	2 cut(s)	508, 1066
BtsIMutI	CAGTG	2 cut(s)	99, 454
Cac8I	GCNNGC	5 cut(s)	83, 167, 205, 900, 992
Cfr10I	RCCGGY	1 cut(s)	583
ClaI	ATCGAT	1 cut(s)	558
CseI	GACGC	2 cut(s)	117, 777
Csp6I	GTAC	3 cut(s)	48, 581, 941
CspAI	ACCGGT	1 cut(s)	583
CviAII	CATG	3 cut(s)	276, 991, 1006
CviQI	GTAC	3 cut(s)	48, 581, 941
DdeI	CTNAG	7 cut(s)	69, 147, 533, 795, 839, 867, 1097
DpnI	GATC	2 cut(s)	538, 1109
DpnII	GATC	2 cut(s)	536, 1107
EaeI	YGGCCR	1 cut(s)	1044
Eam1104I	CTCTTC	2 cut(s)	190, 384
EarI	CTCTTC	2 cut(s)	190, 384
Eco57I	CTGAAG	1 cut(s)	249
EcoRI	GAATTC	1 cut(s)	233
EcoRII	CCWGG	2 cut(s)	136, 961
EcoT22I	ATGCAT	1 cut(s)	568
FaeI	CATG	3 cut(s)	279, 994, 1009
FaiI	YATR	9 cut(s)	266, 277, 515, 568, 710, 714, 917, 992, 1007
FalI	AAGNNNNNCTT	2 cut(s)	648, 680
FatI	CATG	3 cut(s)	275, 990, 1005
Fnu4HI	GCNGC	5 cut(s)	381, 786, 903, 906, 975
FokI	GGATG	2 cut(s)	515, 1073
Fsp4HI	GCNGC	5 cut(s)	381, 786, 903, 906, 975
FspBI	CTAG	4 cut(s)	204, 326, 752, 764
GluI	GCNGC	5 cut(s)	381, 786, 903, 906, 975
GsuI	CTGGAG	2 cut(s)	561, 984
HaeIII	GGCC	3 cut(s)	343, 430, 1046
HapII	CCGG	1 cut(s)	584
HgaI	GACGC	2 cut(s)	117, 777
Hin1II	CATG	3 cut(s)	279, 994, 1009
HincII	GTYRAC	1 cut(s)	959
HindII	GTYRAC	1 cut(s)	959
HindIII	AAGCTT	3 cut(s)	317, 523, 836
HinfI	GANTC	2 cut(s)	151, 180
HpaII	CCGG	1 cut(s)	584
HphI	GGTGA	1 cut(s)	1043
Hpy166II	GTNNAC	3 cut(s)	220, 941, 959
Hpy188I	TCNGA	7 cut(s)	150, 158, 229, 361, 534, 686, 868
Hpy188III	TCNNGA	4 cut(s)	540, 643, 752, 1116
Hpy8I	GTNNAC	3 cut(s)	220, 941, 959
Hpy99I	CGWCG	1 cut(s)	439
HpyAV	CCTTC	3 cut(s)	441, 670, 763
HpyCH4III	ACNGT	1 cut(s)	938
HpyCH4IV	ACGT	1 cut(s)	216
HpyF10VI	GCNNNNNNNGC	2 cut(s)	791, 899
HpyF3I	CTNAG	7 cut(s)	69, 147, 533, 795, 839, 867, 1097
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	3 cut(s)	279, 994, 1009
Kzo9I	GATC	2 cut(s)	536, 1107
LmnI	GCTCC	1 cut(s)	757
Lsp1109I	GCAGC	5 cut(s)	367, 797, 889, 892, 961
LweI	GCATC	2 cut(s)	636, 833
MaeI	CTAG	4 cut(s)	204, 326, 752, 764
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	2 cut(s)	538, 1109
MboI	GATC	2 cut(s)	536, 1107
MboII	GAAGA	9 cut(s)	26, 81, 117, 177, 224, 242, 401, 735, 827
MflI	RGATCY	1 cut(s)	536
MluCI	AATT	7 cut(s)	21, 39, 112, 130, 233, 337, 551
MnlI	CCTC	8 cut(s)	244, 540, 688, 748, 798, 871, 1022, 1064
Mph1103I	ATGCAT	1 cut(s)	568
MroXI	GAANNNNTTC	1 cut(s)	663
MseI	TTAA	2 cut(s)	27, 1019
MspA1I	CMGCKG	1 cut(s)	794
MspI	CCGG	1 cut(s)	584
MspR9I	CCNGG	2 cut(s)	138, 963
MvaI	CCWGG	2 cut(s)	138, 963
MvnI	CGCG	1 cut(s)	572
MwoI	GCNNNNNNNGC	2 cut(s)	791, 899
NdeII	GATC	2 cut(s)	536, 1107
NheI	GCTAGC	1 cut(s)	203
NlaIII	CATG	3 cut(s)	279, 994, 1009
NsiI	ATGCAT	1 cut(s)	568
NspI	RCATGY	1 cut(s)	994
PaeI	GCATGC	1 cut(s)	994
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	2 cut(s)	151, 180
PinAI	ACCGGT	1 cut(s)	583
PkrI	GCNGC	5 cut(s)	382, 787, 904, 907, 976
Psp6I	CCWGG	2 cut(s)	136, 961
PspGI	CCWGG	2 cut(s)	136, 961
PsuI	RGATCY	1 cut(s)	536
RsaI	GTAC	3 cut(s)	49, 582, 942
RsaNI	GTAC	3 cut(s)	48, 581, 941
SaqAI	TTAA	2 cut(s)	27, 1019
SatI	GCNGC	5 cut(s)	381, 786, 903, 906, 975
Sau3AI	GATC	2 cut(s)	536, 1107
ScrFI	CCNGG	2 cut(s)	138, 963
SfaNI	GCATC	2 cut(s)	636, 833
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
SpeI	ACTAGT	1 cut(s)	763
SphI	GCATGC	1 cut(s)	994
Sse9I	AATT	7 cut(s)	21, 39, 112, 130, 233, 337, 551
SsiI	CCGC	3 cut(s)	572, 792, 908
SspMI	CTAG	4 cut(s)	204, 326, 752, 764
StyD4I	CCNGG	2 cut(s)	136, 961
TaaI	ACNGT	1 cut(s)	938
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	4 cut(s)	188, 518, 558, 642
TasI	AATT	7 cut(s)	21, 39, 112, 130, 233, 337, 551
TatI	WGTACW	2 cut(s)	47, 940
TfiI	GAWTC	2 cut(s)	151, 180
Tru1I	TTAA	2 cut(s)	27, 1019
Tru9I	TTAA	2 cut(s)	27, 1019
TscAI	CASTG	2 cut(s)	106, 454
TseI	GCWGC	5 cut(s)	380, 785, 902, 905, 974
TspDTI	ATGAA	1 cut(s)	402
TspRI	CASTG	2 cut(s)	106, 454
XapI	RAATTY	4 cut(s)	39, 130, 233, 551
XbaI	TCTAGA	1 cut(s)	751
XceI	RCATGY	1 cut(s)	994
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1054
XmnI	GAANNNNTTC	1 cut(s)	663
XspI	CTAG	4 cut(s)	204, 326, 752, 764
Zsp2I	ATGCAT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.