Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002631

Physical Location & Seq

Genomic Coordinates Forward (+)

13991753 .. 13997396

Gene Structure 5644 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG151300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGAAGTATGCAATTATGTGTTTATCTCACGCTATTATCTTCTTGATACTGTCAGCATTTAAAAAGCTCGGGCTTGACTGTGCAAACTGGACTGAACCTGTTTATTTGGACCTCCTAAGGAAGTGTGCTGGTGATGAGGAAAAGATGCTGATCATGTATTTTAATCGGATTGGTTGGCCCTCGTCATTGCCCACTACTGAGAAAGAATCATTCATAAAAAATGTTCTGCAAAAAAAGAAAATAGCAATGGATGAGTTTCTGATGTCCAATAGTTTACCTTTACGACCTGGACTTGAAGAATTTATCGATGATGCATACAATGAAGGAATACCTGTGGTCATATTGACATCATATAGTAAAAGTGGGGATGCAATTTCCAGATCCATCATTGAAAAGCTTGGCCAAGAAAGAATTTTGAGGCTAAAGATTGTTGGAGATAAGGAGGTGGAAAAGAGTTTATATGGTCAAGTAGTATTTGGTAAAGTCTTTTCTTCAGGTGTGGATGAGGAACTAGCTAAGGAGGCAATGAAAGCAGTTTCTGCTGAGAAACAAAGGATTGCAGAGGAGGTTGCGTCGATGCTAAAGTTGAATGTAGAGATTGATACTACCTCATCAGAAAGCTTACAGAAGATCATAGCTGCCTTGAGGGCAGGGGCAGAAAATGCTGGACTACCTGTCTCCAATTGTGTTCTAATTGCAGGAAGCCAGTCAGGAGTGGTAGGAGCTCGGCAAGTGGGCATGCCATGTGTTGTTTTAAGAAGCAGTTTGACGGCTAGAGCCGAGTTCCCTTCAGCAAATGCGATAATGGATGGATTTGGAGGAGCAGACCTAACTATTCCCAAACTTAAAAACAAGAAATGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

288

Amino Acids

31.54

Weight (kDa)

7.54

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45170 AT5G45170
fragaria_vesca	FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870
malus_domestica	MD10G1237500.v1.1 MD10G1237600.v1.1 MD10G1238000.v1.1
prunus_persica	Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1
pyrus_communis	pycom10g19890 pycom10g19900 pycom10g19910
rosa_chinensis	RchiOBHm_Chr5g0019301 RchiOBHm_Chr5g0019331 RchiOBHm_Chr5g0019341
rosa_laevigata	RLG00000032436 RLG00000032439
rosa_multiflora	Rmu_sc0002141.1_g000019 Rmu_sc0002759.1_g000029 Rmu_sc0005292.1_g000001 Rmu_sc0005292.1_g000024
rosa_roxburghii	Rroxscaffold_1G00058680 Rroxscaffold_1G00058690 Rroxscaffold_1G00074220 Rroxscaffold_1G00074230
rosa_rugosa	Rorug01G0008700 Rorug05G0049500 Rorug05G0050700
rosa_samantha	Rh5AG140600 Rh5BG139600 Rh5CG150900 Rh5CG151300 Rh5DG140100 Rh5DG140500
rosa_wichuraiana	Rw5G012500 Rw5G012520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	375
AcoI	YGGCCR	1 cut(s)	400
AcsI	RAATTY	2 cut(s)	299, 411
AcuI	CTGAAG	2 cut(s)	477, 774
AgsI	TTSAA	3 cut(s)	296, 392, 589
AhdI	GACNNNNNGTC	1 cut(s)	674
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	6 cut(s)	67, 397, 515, 621, 638, 725
AluI	AGCT	6 cut(s)	67, 397, 515, 621, 638, 725
Alw21I	GWGCWC	1 cut(s)	727
Alw26I	GTCTC	1 cut(s)	682
AlwI	GGATC	1 cut(s)	375
AlwNI	CAGNNNCTG	1 cut(s)	539
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	2 cut(s)	176, 400
ApeKI	GCWGC	1 cut(s)	638
ApoI	RAATTY	2 cut(s)	299, 411
AspS9I	GGNCC	2 cut(s)	109, 177
AsuHPI	GGTGA	1 cut(s)	143
AvaI	CYCGRG	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	109
AxyI	CCTNAGG	1 cut(s)	116
BalI	TGGCCA	1 cut(s)	402
BanII	GRGCYC	1 cut(s)	727
Bbv12I	GWGCWC	1 cut(s)	727
BbvI	GCAGC	1 cut(s)	625
BccI	CCATC	2 cut(s)	392, 803
BceAI	ACGGC	1 cut(s)	786
BciT130I	CCWGG	1 cut(s)	288
BclI	TGATCA	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	682
BfaI	CTAG	2 cut(s)	512, 774
BglI	GCCNNNNNGGC	1 cut(s)	647
BisI	GCNGC	1 cut(s)	639
BlsI	GCNGC	1 cut(s)	640
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	109
BmeRI	GACNNNNNGTC	1 cut(s)	674
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	2 cut(s)	109, 177
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	4 cut(s)	135, 301, 358, 567
Bpu10I	CCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	664
Bsa29I	ATCGAT	1 cut(s)	306
BsaBI	GATNNNNATC	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	557, 587
Bse1I	ACTGG	2 cut(s)	92, 706
Bse21I	CCTNAGG	1 cut(s)	116
Bse3DI	GCAATG	3 cut(s)	185, 252, 531
Bse8I	GATNNNNATC	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	288
BseCI	ATCGAT	1 cut(s)	306
BseGI	GGATG	4 cut(s)	256, 373, 508, 814
BseJI	GATNNNNATC	1 cut(s)	149
BseMI	GCAATG	3 cut(s)	185, 252, 531
BseMII	CTCAG	2 cut(s)	189, 534
BseNI	ACTGG	2 cut(s)	92, 706
BseRI	GAGGAG	2 cut(s)	578, 834
BseXI	GCAGC	1 cut(s)	625
BshFI	GGCC	2 cut(s)	178, 402
BshVI	ATCGAT	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	727
BsiHKCI	CYCGRG	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	682
BsnI	GGCC	2 cut(s)	178, 402
BsoBI	CYCGRG	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	727
Bsp143I	GATC	3 cut(s)	150, 380, 630
BspANI	GGCC	2 cut(s)	178, 402
BspCNI	CTCAG	2 cut(s)	190, 535
BspDI	ATCGAT	1 cut(s)	306
BspPI	GGATC	1 cut(s)	375
BsrDI	GCAATG	3 cut(s)	185, 252, 531
BsrI	ACTGG	2 cut(s)	92, 706
BssMI	GATC	3 cut(s)	150, 380, 630
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	2 cut(s)	51, 80
BstAPI	GCANNNNNTGC	2 cut(s)	539, 662
BstC8I	GCNNGC	1 cut(s)	740
BstDEI	CTNAG	4 cut(s)	116, 198, 516, 543
BstF5I	GGATG	4 cut(s)	256, 373, 508, 814
BstKTI	GATC	3 cut(s)	153, 383, 633
BstMAI	GTCTC	1 cut(s)	682
BstMBI	GATC	3 cut(s)	150, 380, 630
BstMWI	GCNNNNNNNGC	5 cut(s)	521, 530, 539, 647, 662
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	1 cut(s)	742
BstSCI	CCNGG	1 cut(s)	286
BstV1I	GCAGC	1 cut(s)	625
BstX2I	RGATCY	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	380
Bsu15I	ATCGAT	1 cut(s)	306
Bsu36I	CCTNAGG	1 cut(s)	116
BsuRI	GGCC	2 cut(s)	178, 402
BsuTUI	ATCGAT	1 cut(s)	306
BtsCI	GGATG	4 cut(s)	256, 373, 508, 814
Cac8I	GCNNGC	1 cut(s)	740
CaiI	CAGNNNCTG	1 cut(s)	539
Cfr13I	GGNCC	2 cut(s)	109, 177
ClaI	ATCGAT	1 cut(s)	306
CseI	GACGC	1 cut(s)	561
CviAII	CATG	3 cut(s)	154, 739, 744
DdeI	CTNAG	4 cut(s)	116, 198, 516, 543
DpnI	GATC	3 cut(s)	152, 382, 632
DpnII	GATC	3 cut(s)	150, 380, 630
DraI	TTTAAA	1 cut(s)	61
DriI	GACNNNNNGTC	1 cut(s)	674
EaeI	YGGCCR	1 cut(s)	400
Eam1105I	GACNNNNNGTC	1 cut(s)	674
Ecl136II	GAGCTC	1 cut(s)	725
Eco24I	GRGCYC	1 cut(s)	727
Eco47I	GGWCC	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	725
Eco57I	CTGAAG	2 cut(s)	477, 774
Eco81I	CCTNAGG	1 cut(s)	116
Eco88I	CYCGRG	1 cut(s)	68
EcoICRI	GAGCTC	1 cut(s)	725
EcoRII	CCWGG	1 cut(s)	286
EcoT22I	ATGCAT	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	727
FaeI	CATG	3 cut(s)	157, 742, 747
FatI	CATG	3 cut(s)	153, 738, 743
FbaI	TGATCA	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	639
FokI	GGATG	4 cut(s)	263, 380, 515, 821
FriOI	GRGCYC	1 cut(s)	727
Fsp4HI	GCNGC	1 cut(s)	639
FspBI	CTAG	2 cut(s)	512, 774
GluI	GCNGC	1 cut(s)	639
HaeIII	GGCC	2 cut(s)	178, 402
HgaI	GACGC	1 cut(s)	561
Hin1II	CATG	3 cut(s)	157, 742, 747
HindIII	AAGCTT	2 cut(s)	395, 619
HinfI	GANTC	1 cut(s)	206
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188I	TCNGA	3 cut(s)	168, 261, 616
Hpy188III	TCNNGA	3 cut(s)	43, 378, 711
Hpy8I	GTNNAC	1 cut(s)	275
Hpy99I	CGWCG	1 cut(s)	577
HpyAV	CCTTC	2 cut(s)	317, 798
HpyCH4III	ACNGT	2 cut(s)	51, 80
HpyCH4V	TGCA	7 cut(s)	11, 83, 229, 314, 371, 560, 698
HpyF10VI	GCNNNNNNNGC	5 cut(s)	521, 530, 539, 647, 662
HpyF3I	CTNAG	4 cut(s)	116, 198, 516, 543
Hsp92II	CATG	3 cut(s)	157, 742, 747
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	3 cut(s)	150, 380, 630
LmnI	GCTCC	2 cut(s)	722, 821
Lsp1109I	GCAGC	1 cut(s)	625
LweI	GCATC	4 cut(s)	135, 301, 358, 567
MaeI	CTAG	2 cut(s)	512, 774
MalI	GATC	3 cut(s)	152, 382, 632
MboI	GATC	3 cut(s)	150, 380, 630
MboII	GAAGA	4 cut(s)	31, 308, 483, 640
MfeI	CAATTG	1 cut(s)	682
MflI	RGATCY	1 cut(s)	380
MhlI	GDGCHC	1 cut(s)	727
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	6 cut(s)	12, 299, 372, 411, 682, 693
MluNI	TGGCCA	1 cut(s)	402
MmeI	TCCRAC	1 cut(s)	412
Mox20I	TGGCCA	1 cut(s)	402
Mph1103I	ATGCAT	1 cut(s)	316
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	4 cut(s)	60, 162, 755, 846
Msp20I	TGGCCA	1 cut(s)	402
MspR9I	CCNGG	1 cut(s)	288
MunI	CAATTG	1 cut(s)	682
MvaI	CCWGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	5 cut(s)	521, 530, 539, 647, 662
NdeII	GATC	3 cut(s)	150, 380, 630
NlaIII	CATG	3 cut(s)	157, 742, 747
NmeAIII	GCCGAG	2 cut(s)	706, 805
NsiI	ATGCAT	1 cut(s)	316
NspI	RCATGY	1 cut(s)	742
PaeI	GCATGC	1 cut(s)	742
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	640
Psp124BI	GAGCTC	1 cut(s)	727
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspPI	GGNCC	2 cut(s)	109, 177
PstNI	CAGNNNCTG	1 cut(s)	539
PsuI	RGATCY	1 cut(s)	380
SacI	GAGCTC	1 cut(s)	727
SaqAI	TTAA	4 cut(s)	60, 162, 755, 846
SatI	GCNGC	1 cut(s)	639
Sau3AI	GATC	3 cut(s)	150, 380, 630
Sau96I	GGNCC	2 cut(s)	109, 177
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	1 cut(s)	727
SfaNI	GCATC	4 cut(s)	135, 301, 358, 567
SinI	GGWCC	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	643
SmoI	CTYRAG	1 cut(s)	643
SphI	GCATGC	1 cut(s)	742
Sse9I	AATT	6 cut(s)	12, 299, 372, 411, 682, 693
SspMI	CTAG	2 cut(s)	512, 774
SstI	GAGCTC	1 cut(s)	727
StyD4I	CCNGG	1 cut(s)	286
TaaI	ACNGT	2 cut(s)	51, 80
TaqI	TCGA	2 cut(s)	306, 575
TasI	AATT	6 cut(s)	12, 299, 372, 411, 682, 693
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	4 cut(s)	60, 162, 755, 846
Tru9I	TTAA	4 cut(s)	60, 162, 755, 846
TseI	GCWGC	1 cut(s)	638
TspDTI	ATGAA	4 cut(s)	17, 202, 336, 542
VpaK11BI	GGWCC	1 cut(s)	109
XapI	RAATTY	2 cut(s)	299, 411
XceI	RCATGY	1 cut(s)	742
XspI	CTAG	2 cut(s)	512, 774
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.