Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002141.1

Orthogroup ID

OG0002631

Physical Location & Seq

Genomic Coordinates Reverse (-)

62307 .. 68213

Gene Structure 5907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002141.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atggaattcgcgtcctgctctattctcaggcctcagtccttctcaaccatctttcacgataccaactctcacctctacgctttacccaagaaccatctcaactcgccctctccattttcccctgctctcccaaaaaactcaacctttcccggaaaatgtctccactttcatcgcttcaatgctttcagctcactttcaggcgccgacgggcagaacccatctcaggaactcgctgttcttcttgaagttgacggggttcttatggatgcgtatcgtttgggtaaccgcccatccttcaataaaattgcaatggatgagtttctgatgtccaatagtttacctttgcgacctggacttgaagaatttattgatgatgcatacaatgaaggaatacctgtggtcatattgacatcctatagtaaaagtggggatgcaatttccagatccatcattgaaaagcttggccatgaaagaattttgaagctaaagattgttggggataaggaggtggaacagagtttatatggtcaatttgtatccagtaaagtcttttcttcaggtgtggatgaggaactagctaaggaagcaatgaaagcagtttctgctgagaaacaaaggattgctgaggaggttgcatcaatgctaaagttgaatgtagaacttgatactacctcatctaaaagcttacagaagatcatagctaccttgagggcaggggcagaaaatgctggactacctgtctccaattgtgttctaattgcaggaagccagtcaggtgtagtaggagctcagcgagtgggcatgccatgtgttgttttaagaagcagtttgacggctagagctgagttcccttcagcaaatgcgataatggatggatttggaggagcagacctaactattcctaaacttaaaaacaagaaatggttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

309

Amino Acids

33.45

Weight (kDa)

6.61

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45170 AT5G45170
fragaria_vesca	FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870
malus_domestica	MD10G1237500.v1.1 MD10G1237600.v1.1 MD10G1238000.v1.1
prunus_persica	Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1
pyrus_communis	pycom10g19890 pycom10g19900 pycom10g19910
rosa_chinensis	RchiOBHm_Chr5g0019301 RchiOBHm_Chr5g0019331 RchiOBHm_Chr5g0019341
rosa_laevigata	RLG00000032436 RLG00000032439
rosa_multiflora	Rmu_sc0002141.1_g000019 Rmu_sc0002759.1_g000029 Rmu_sc0005292.1_g000001 Rmu_sc0005292.1_g000024
rosa_roxburghii	Rroxscaffold_1G00058680 Rroxscaffold_1G00058690 Rroxscaffold_1G00074220 Rroxscaffold_1G00074230
rosa_rugosa	Rorug01G0008700 Rorug05G0049500 Rorug05G0050700
rosa_samantha	Rh5AG140600 Rh5BG139600 Rh5CG150900 Rh5CG151300 Rh5DG140100 Rh5DG140500
rosa_wichuraiana	Rw5G012500 Rw5G012520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	200
AccII	CGCG	1 cut(s)	11
AciI	CCGC	1 cut(s)	286
AclWI	GGATC	1 cut(s)	438
AcoI	YGGCCR	1 cut(s)	463
AcsI	RAATTY	3 cut(s)	5, 362, 474
AcuI	CTGAAG	2 cut(s)	540, 837
AcyI	GRCGYC	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	7 cut(s)	178, 245, 298, 359, 455, 481, 652
AhdI	GACNNNNNGTC	1 cut(s)	737
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	8 cut(s)	189, 460, 484, 578, 684, 701, 788, 842
AluI	AGCT	8 cut(s)	189, 460, 484, 578, 684, 701, 788, 842
Alw21I	GWGCWC	1 cut(s)	790
Alw26I	GTCTC	2 cut(s)	164, 745
AlwI	GGATC	1 cut(s)	438
AlwNI	CAGNNNCTG	1 cut(s)	602
AoxI	GGCC	2 cut(s)	29, 463
ApoI	RAATTY	3 cut(s)	5, 362, 474
AspLEI	GCGC	1 cut(s)	203
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	1 cut(s)	62
BalI	TGGCCA	1 cut(s)	465
BanI	GGYRCC	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	790
Bbv12I	GWGCWC	1 cut(s)	790
BbvCI	CCTCAGC	1 cut(s)	624
BccI	CCATC	6 cut(s)	56, 102, 226, 298, 455, 866
BceAI	ACGGC	1 cut(s)	849
BciT130I	CCWGG	1 cut(s)	351
BciVI	GTATCC	1 cut(s)	547
BcnI	CCSGG	1 cut(s)	150
BcoDI	GTCTC	2 cut(s)	164, 745
BfaI	CTAG	2 cut(s)	575, 837
BfmI	CTRYAG	1 cut(s)	415
BfoI	RGCGCY	1 cut(s)	204
BfuI	GTATCC	1 cut(s)	547
BlpI	GCTNAGC	1 cut(s)	789
Bme1390I	CCNGG	2 cut(s)	150, 351
BmeRI	GACNNNNNGTC	1 cut(s)	737
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	2 cut(s)	150, 351
BmsI	GCATC	4 cut(s)	256, 364, 421, 644
Bpu10I	CCTNAGC	2 cut(s)	579, 624
Bpu1102I	GCTNAGC	1 cut(s)	789
BpuEI	CTTGAG	1 cut(s)	727
BpuMI	CCSGG	1 cut(s)	150
BsaBI	GATNNNNATC	1 cut(s)	270
BsaHI	GRCGYC	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	2 cut(s)	540, 769
Bse3DI	GCAATG	2 cut(s)	315, 594
Bse8I	GATNNNNATC	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	351
BseGI	GGATG	7 cut(s)	271, 290, 319, 410, 436, 571, 877
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	2 cut(s)	315, 594
BseMII	CTCAG	7 cut(s)	40, 47, 236, 597, 615, 803, 834
BseNI	ACTGG	2 cut(s)	540, 769
BseRI	GAGGAG	2 cut(s)	641, 897
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	2 cut(s)	31, 465
BshNI	GGYRCC	1 cut(s)	200
BsiHKAI	GWGCWC	1 cut(s)	790
BsiSI	CCGG	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	2 cut(s)	164, 745
BsnI	GGCC	2 cut(s)	31, 465
Bsp1286I	GDGCHC	1 cut(s)	790
Bsp143I	GATC	2 cut(s)	443, 693
Bsp1720I	GCTNAGC	1 cut(s)	789
BspACI	CCGC	1 cut(s)	286
BspANI	GGCC	2 cut(s)	31, 465
BspCNI	CTCAG	7 cut(s)	39, 46, 235, 598, 616, 802, 835
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	1 cut(s)	202
BspPI	GGATC	1 cut(s)	438
BspT107I	GGYRCC	1 cut(s)	200
BsrDI	GCAATG	2 cut(s)	315, 594
BsrI	ACTGG	2 cut(s)	540, 769
BssMI	GATC	2 cut(s)	443, 693
BssNI	GRCGYC	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	351
BstACI	GRCGYC	1 cut(s)	201
BstAPI	GCANNNNNTGC	2 cut(s)	602, 725
BstC8I	GCNNGC	1 cut(s)	803
BstDEI	CTNAG	8 cut(s)	26, 33, 222, 579, 606, 624, 789, 843
BstEII	GGTNACC	1 cut(s)	281
BstF5I	GGATG	7 cut(s)	271, 290, 319, 410, 436, 571, 877
BstFNI	CGCG	1 cut(s)	11
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	2 cut(s)	446, 696
BstMAI	GTCTC	2 cut(s)	164, 745
BstMBI	GATC	2 cut(s)	443, 693
BstMWI	GCNNNNNNNGC	4 cut(s)	584, 593, 602, 725
BstNI	CCWGG	1 cut(s)	351
BstNSI	RCATGY	1 cut(s)	805
BstPI	GGTNACC	1 cut(s)	281
BstSCI	CCNGG	2 cut(s)	148, 349
BstSFI	CTRYAG	1 cut(s)	415
BstUI	CGCG	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	443
BsuI	GTATCC	1 cut(s)	547
BsuRI	GGCC	2 cut(s)	31, 465
BtgZI	GCGATG	1 cut(s)	155
BtsCI	GGATG	7 cut(s)	271, 290, 319, 410, 436, 571, 877
Cac8I	GCNNGC	1 cut(s)	803
CaiI	CAGNNNCTG	1 cut(s)	602
CfoI	GCGC	1 cut(s)	203
CviAII	CATG	3 cut(s)	467, 802, 807
DdeI	CTNAG	8 cut(s)	26, 33, 222, 579, 606, 624, 789, 843
DinI	GGCGCC	1 cut(s)	202
DpnI	GATC	2 cut(s)	445, 695
DpnII	GATC	2 cut(s)	443, 693
DriI	GACNNNNNGTC	1 cut(s)	737
EaeI	YGGCCR	1 cut(s)	463
Eam1105I	GACNNNNNGTC	1 cut(s)	737
Ecl136II	GAGCTC	1 cut(s)	788
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	790
Eco53kI	GAGCTC	1 cut(s)	788
Eco57I	CTGAAG	2 cut(s)	540, 837
Eco91I	GGTNACC	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	788
EcoO65I	GGTNACC	1 cut(s)	281
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	349
EcoT22I	ATGCAT	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	790
EgeI	GGCGCC	1 cut(s)	202
EheI	GGCGCC	1 cut(s)	202
FaeI	CATG	3 cut(s)	470, 805, 810
FatI	CATG	3 cut(s)	466, 801, 806
FokI	GGATG	7 cut(s)	277, 278, 326, 397, 443, 578, 884
FriOI	GRGCYC	1 cut(s)	790
FspBI	CTAG	2 cut(s)	575, 837
GlaI	GCGC	1 cut(s)	202
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	2 cut(s)	31, 465
HapII	CCGG	1 cut(s)	150
HhaI	GCGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	3 cut(s)	470, 805, 810
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HindIII	AAGCTT	2 cut(s)	458, 682
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	2 cut(s)	250, 338
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	4 cut(s)	56, 224, 242, 441
Hpy8I	GTNNAC	2 cut(s)	250, 338
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	4 cut(s)	49, 304, 380, 861
HpyCH4V	TGCA	5 cut(s)	308, 377, 434, 635, 761
HpyF10VI	GCNNNNNNNGC	4 cut(s)	584, 593, 602, 725
HpyF3I	CTNAG	8 cut(s)	26, 33, 222, 579, 606, 624, 789, 843
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	3 cut(s)	470, 805, 810
HspAI	GCGC	1 cut(s)	201
KasI	GGCGCC	1 cut(s)	200
Kzo9I	GATC	2 cut(s)	443, 693
LmnI	GCTCC	2 cut(s)	785, 884
LweI	GCATC	4 cut(s)	256, 364, 421, 644
MaeI	CTAG	2 cut(s)	575, 837
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	2 cut(s)	445, 695
MboI	GATC	2 cut(s)	443, 693
MboII	GAAGA	4 cut(s)	230, 371, 546, 703
MfeI	CAATTG	1 cut(s)	745
MflI	RGATCY	1 cut(s)	443
MhlI	GDGCHC	1 cut(s)	790
MlsI	TGGCCA	1 cut(s)	465
MluCI	AATT	8 cut(s)	5, 303, 362, 435, 474, 530, 745, 756
MluNI	TGGCCA	1 cut(s)	465
Mly113I	GGCGCC	1 cut(s)	201
Mox20I	TGGCCA	1 cut(s)	465
Mph1103I	ATGCAT	1 cut(s)	379
MscI	TGGCCA	1 cut(s)	465
MseI	TTAA	2 cut(s)	818, 909
Msp20I	TGGCCA	1 cut(s)	465
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	2 cut(s)	150, 351
MunI	CAATTG	1 cut(s)	745
MvaI	CCWGG	1 cut(s)	351
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	4 cut(s)	584, 593, 602, 725
NarI	GGCGCC	1 cut(s)	201
NciI	CCSGG	1 cut(s)	150
NdeII	GATC	2 cut(s)	443, 693
NlaIII	CATG	3 cut(s)	470, 805, 810
NlaIV	GGNNCC	1 cut(s)	202
NsiI	ATGCAT	1 cut(s)	379
NspI	RCATGY	1 cut(s)	805
PaeI	GCATGC	1 cut(s)	805
PceI	AGGCCT	1 cut(s)	31
PfoI	TCCNGGA	1 cut(s)	148
PluTI	GGCGCC	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	790
Psp6I	CCWGG	1 cut(s)	349
PspEI	GGTNACC	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	202
PstNI	CAGNNNCTG	1 cut(s)	602
PsuI	RGATCY	1 cut(s)	443
SacI	GAGCTC	1 cut(s)	790
SaqAI	TTAA	2 cut(s)	818, 909
Sau3AI	GATC	2 cut(s)	443, 693
ScrFI	CCNGG	2 cut(s)	150, 351
SduI	GDGCHC	1 cut(s)	790
SfaNI	GCATC	4 cut(s)	256, 364, 421, 644
SfcI	CTRYAG	1 cut(s)	415
SfoI	GGCGCC	1 cut(s)	202
SmlI	CTYRAG	1 cut(s)	706
SmoI	CTYRAG	1 cut(s)	706
SphI	GCATGC	1 cut(s)	805
Sse9I	AATT	8 cut(s)	5, 303, 362, 435, 474, 530, 745, 756
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	286
SspDI	GGCGCC	1 cut(s)	200
SspMI	CTAG	2 cut(s)	575, 837
SstI	GAGCTC	1 cut(s)	790
StuI	AGGCCT	1 cut(s)	31
StyD4I	CCNGG	2 cut(s)	148, 349
TasI	AATT	8 cut(s)	5, 303, 362, 435, 474, 530, 745, 756
Tru1I	TTAA	2 cut(s)	818, 909
Tru9I	TTAA	2 cut(s)	818, 909
TspDTI	ATGAA	4 cut(s)	158, 399, 483, 605
XapI	RAATTY	3 cut(s)	5, 362, 474
XceI	RCATGY	1 cut(s)	805
XspI	CTAG	2 cut(s)	575, 837
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.