Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002631

Physical Location & Seq

Genomic Coordinates Forward (+)

14713779 .. 14717083

Gene Structure 3305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G012520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAATTCGCTTCCTGCTCTATTCTCAGGCCTCAGTCCTTCTCAACCATCTCTCACGATACCAGCTCTCACCTCTACGCTTTACCCAAGAACCATCTCAACTTGCCCTCTCCATTTTCCCCTGCTTTCCCAAAAAACTCAACCTTTCCCGGAAAATGTCTCCACTTTCATCGCTTCACTGCTTTCAGCTCACTTTCCGGCGCCGACGACCAGAACCCATCTCAGGAACTCGCTGTTCTTCTTGAAGTTGACGGGGTTCTTATGGATGCGTATCATTTGGGTAACCGCCCATCCTTCAATGTAGCATTTAAAAAGTTCGGGTTTGACTGTGCAAACTGGACTGAACCTGTTTATTTGGACCTCCTAAGGAAGTGTGCTGGTGATGAGGAAAAGATGCTGATCATGTATTTTAATCGGATTGGTTGGCCCTCGTCATTGCCCACTACTAAGAAAGAATCATTCATAAAAAATGTTCTGCAAAAAAAGATTTATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

18.73

Weight (kDa)

8.67

Isoelectric Point (pI)

53.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45170 AT5G45170
fragaria_vesca	FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870 FvH4_3g11870
malus_domestica	MD10G1237500.v1.1 MD10G1237600.v1.1 MD10G1238000.v1.1
prunus_persica	Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1 Prupe.4G106200_v2.0.a1
pyrus_communis	pycom10g19890 pycom10g19900 pycom10g19910
rosa_chinensis	RchiOBHm_Chr5g0019301 RchiOBHm_Chr5g0019331 RchiOBHm_Chr5g0019341
rosa_laevigata	RLG00000032436 RLG00000032439
rosa_multiflora	Rmu_sc0002141.1_g000019 Rmu_sc0002759.1_g000029 Rmu_sc0005292.1_g000001 Rmu_sc0005292.1_g000024
rosa_roxburghii	Rroxscaffold_1G00058680 Rroxscaffold_1G00058690 Rroxscaffold_1G00074220 Rroxscaffold_1G00074230
rosa_rugosa	Rorug01G0008700 Rorug05G0049500 Rorug05G0050700
rosa_samantha	Rh5AG140600 Rh5BG139600 Rh5CG150900 Rh5CG151300 Rh5DG140100 Rh5DG140500
rosa_wichuraiana	Rw5G012500 Rw5G012520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	200
AciI	CCGC	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	5
AcyI	GRCGYC	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	2 cut(s)	245, 298
AluBI	AGCT	2 cut(s)	66, 189
AluI	AGCT	2 cut(s)	66, 189
Alw26I	GTCTC	1 cut(s)	164
AoxI	GGCC	2 cut(s)	29, 425
ApoI	RAATTY	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	2 cut(s)	358, 426
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	2 cut(s)	62, 392
AvaII	GGWCC	1 cut(s)	358
AxyI	CCTNAGG	1 cut(s)	365
BanI	GGYRCC	1 cut(s)	200
BccI	CCATC	4 cut(s)	56, 102, 226, 298
BclI	TGATCA	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	164
BfoI	RGCGCY	1 cut(s)	204
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	1 cut(s)	358
BmgT120I	GGNCC	2 cut(s)	358, 426
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	2 cut(s)	256, 384
BpuMI	CCSGG	1 cut(s)	150
Bsa29I	ATCGAT	1 cut(s)	493
BsaBI	GATNNNNATC	2 cut(s)	270, 398
BsaHI	GRCGYC	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	341
Bse21I	CCTNAGG	1 cut(s)	365
Bse3DI	GCAATG	1 cut(s)	434
Bse8I	GATNNNNATC	2 cut(s)	270, 398
BseCI	ATCGAT	1 cut(s)	493
BseGI	GGATG	2 cut(s)	271, 290
BseJI	GATNNNNATC	2 cut(s)	270, 398
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	434
BseMII	CTCAG	3 cut(s)	40, 47, 236
BseNI	ACTGG	1 cut(s)	341
BshFI	GGCC	2 cut(s)	31, 427
BshNI	GGYRCC	1 cut(s)	200
BshVI	ATCGAT	1 cut(s)	493
BsiSI	CCGG	2 cut(s)	150, 198
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	164
BsnI	GGCC	2 cut(s)	31, 427
Bsp143I	GATC	1 cut(s)	399
BspACI	CCGC	1 cut(s)	286
BspANI	GGCC	2 cut(s)	31, 427
BspCNI	CTCAG	3 cut(s)	39, 46, 235
BspDI	ATCGAT	1 cut(s)	493
BspLI	GGNNCC	1 cut(s)	202
BspT107I	GGYRCC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	341
BssMI	GATC	1 cut(s)	399
BssNI	GRCGYC	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	329
BstACI	GRCGYC	1 cut(s)	201
BstDEI	CTNAG	5 cut(s)	26, 33, 222, 365, 447
BstEII	GGTNACC	1 cut(s)	281
BstF5I	GGATG	2 cut(s)	271, 290
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	1 cut(s)	402
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	1 cut(s)	399
BstPI	GGTNACC	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	148
Bsu15I	ATCGAT	1 cut(s)	493
Bsu36I	CCTNAGG	1 cut(s)	365
BsuRI	GGCC	2 cut(s)	31, 427
BsuTUI	ATCGAT	1 cut(s)	493
BtgZI	GCGATG	1 cut(s)	155
BtsCI	GGATG	2 cut(s)	271, 290
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	177
CfoI	GCGC	1 cut(s)	203
Cfr13I	GGNCC	2 cut(s)	358, 426
ClaI	ATCGAT	1 cut(s)	493
CviAII	CATG	1 cut(s)	403
CviJI	RGCY	4 cut(s)	31, 66, 189, 427
CviKI_1	RGCY	4 cut(s)	31, 66, 189, 427
DdeI	CTNAG	5 cut(s)	26, 33, 222, 365, 447
DinI	GGCGCC	1 cut(s)	202
DpnI	GATC	1 cut(s)	401
DpnII	GATC	1 cut(s)	399
DraI	TTTAAA	1 cut(s)	310
Eco147I	AGGCCT	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	358
Eco81I	CCTNAGG	1 cut(s)	365
Eco91I	GGTNACC	1 cut(s)	281
EcoO65I	GGTNACC	1 cut(s)	281
EcoRI	GAATTC	1 cut(s)	5
EgeI	GGCGCC	1 cut(s)	202
EheI	GGCGCC	1 cut(s)	202
FaeI	CATG	1 cut(s)	406
FaiI	YATR	3 cut(s)	263, 404, 464
FatI	CATG	1 cut(s)	402
FbaI	TGATCA	1 cut(s)	399
FokI	GGATG	2 cut(s)	277, 278
GlaI	GCGC	1 cut(s)	202
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	2 cut(s)	31, 427
HapII	CCGG	2 cut(s)	150, 198
HhaI	GCGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	1 cut(s)	406
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	1 cut(s)	455
HpaII	CCGG	2 cut(s)	150, 198
HphI	GGTGA	2 cut(s)	62, 392
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	417
Hpy188III	TCNNGA	3 cut(s)	56, 224, 242
Hpy8I	GTNNAC	1 cut(s)	250
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	2 cut(s)	49, 304
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4V	TGCA	2 cut(s)	332, 478
HpyF3I	CTNAG	5 cut(s)	26, 33, 222, 365, 447
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	1 cut(s)	406
HspAI	GCGC	1 cut(s)	201
KasI	GGCGCC	1 cut(s)	200
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	1 cut(s)	399
LweI	GCATC	2 cut(s)	256, 384
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	1 cut(s)	401
MboI	GATC	1 cut(s)	399
MboII	GAAGA	1 cut(s)	230
MluCI	AATT	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	201
MnlI	CCTC	6 cut(s)	42, 83, 118, 371, 379, 439
MseI	TTAA	2 cut(s)	309, 411
MspI	CCGG	2 cut(s)	150, 198
MspR9I	CCNGG	1 cut(s)	150
NarI	GGCGCC	1 cut(s)	201
NciI	CCSGG	1 cut(s)	150
NdeII	GATC	1 cut(s)	399
NlaIII	CATG	1 cut(s)	406
NlaIV	GGNNCC	1 cut(s)	202
PceI	AGGCCT	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	455
PfoI	TCCNGGA	1 cut(s)	148
PluTI	GGCGCC	1 cut(s)	204
PspEI	GGTNACC	1 cut(s)	281
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	2 cut(s)	358, 426
SaqAI	TTAA	2 cut(s)	309, 411
Sau3AI	GATC	1 cut(s)	399
Sau96I	GGNCC	2 cut(s)	358, 426
ScrFI	CCNGG	1 cut(s)	150
SetI	ASST	6 cut(s)	68, 75, 146, 191, 349, 363
SfaNI	GCATC	2 cut(s)	256, 384
SfoI	GGCGCC	1 cut(s)	202
SinI	GGWCC	1 cut(s)	358
Sse9I	AATT	1 cut(s)	5
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	286
SspDI	GGCGCC	1 cut(s)	200
StuI	AGGCCT	1 cut(s)	31
StyD4I	CCNGG	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	329
TaqI	TCGA	1 cut(s)	493
TasI	AATT	1 cut(s)	5
TfiI	GAWTC	1 cut(s)	455
Tru1I	TTAA	2 cut(s)	309, 411
Tru9I	TTAA	2 cut(s)	309, 411
TscAI	CASTG	1 cut(s)	184
TspDTI	ATGAA	2 cut(s)	158, 451
TspRI	CASTG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	358
XapI	RAATTY	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.