Haloacid dehalogenase-like hydrolase domain-containing protein At3g48420
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SNF2-rel_dom | PF00176 | 639 - 1037 | 4.3e-65 | SNF2-related domain |
| zf-C3HC4 | PF00097 | 1078 - 1114 | 3.8e-07 | Zinc finger, C3HC4 type (RING finger) |
| zf-C3HC4_2 | PF13923 | 1078 - 1114 | 1.2e-07 | Zinc finger, C3HC4 type (RING finger) |
| Helicase_C | PF00271 | 1234 - 1334 | 8.5e-20 | Helicase conserved C-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1327 |
| Acc36I | ACCTGC | 1 cut(s) | 3762 |
| AccB1I | GGYRCC | 1 cut(s) | 1714 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1886, 2237 |
| AccI | GTMKAC | 1 cut(s) | 2334 |
| AccII | CGCG | 2 cut(s) | 2969, 3012 |
| AccIII | TCCGGA | 1 cut(s) | 124 |
| AclWI | GGATC | 6 cut(s) | 217, 252, 265, 1658, 2354, 2367 |
| AcsI | RAATTY | 8 cut(s) | 772, 922, 1204, 1249, 1343, 2810, 2936, 2960 |
| AcyI | GRCGYC | 2 cut(s) | 307, 1715 |
| AfeI | AGCGCT | 1 cut(s) | 2568 |
| AflII | CTTAAG | 1 cut(s) | 2036 |
| AflIII | ACRYGT | 5 cut(s) | 66, 534, 889, 1326, 1676 |
| AgeI | ACCGGT | 1 cut(s) | 1148 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 4125 |
| AhlI | ACTAGT | 1 cut(s) | 623 |
| AjiI | CACGTC | 1 cut(s) | 1679 |
| AjnI | CCWGG | 5 cut(s) | 260, 310, 394, 451, 2109 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1241, 1273 |
| AleI | CACNNNNGTG | 2 cut(s) | 1352, 1787 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2344, 2376 |
| Alw21I | GWGCWC | 1 cut(s) | 3991 |
| Alw26I | GTCTC | 7 cut(s) | 578, 1313, 1946, 2179, 2552, 2580, 4112 |
| AlwI | GGATC | 6 cut(s) | 217, 252, 265, 1658, 2354, 2367 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 437, 3038 |
| Ama87I | CYCGRG | 1 cut(s) | 101 |
| Aor13HI | TCCGGA | 1 cut(s) | 124 |
| Aor51HI | AGCGCT | 1 cut(s) | 2568 |
| AoxI | GGCC | 4 cut(s) | 2045, 2228, 2667, 3781 |
| ApeKI | GCWGC | 9 cut(s) | 953, 1568, 2431, 2564, 3032, 3035, 3509, 3893, 3920 |
| ApoI | RAATTY | 8 cut(s) | 772, 922, 1204, 1249, 1343, 2810, 2936, 2960 |
| AseI | ATTAAT | 1 cut(s) | 2922 |
| AsiGI | ACCGGT | 1 cut(s) | 1148 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1875 |
| AspLEI | GCGC | 3 cut(s) | 1717, 2569, 3014 |
| AsuC2I | CCSGG | 1 cut(s) | 1712 |
| AsuHPI | GGTGA | 3 cut(s) | 876, 3098, 3335 |
| AsuNHI | GCTAGC | 2 cut(s) | 1958, 2371 |
| AvaI | CYCGRG | 1 cut(s) | 101 |
| AvaII | GGWCC | 9 cut(s) | 149, 398, 449, 821, 1849, 2107, 2422, 3751, 3943 |
| AxyI | CCTNAGG | 2 cut(s) | 2130, 3861 |
| BaeGI | GKGCMC | 2 cut(s) | 534, 3341 |
| BamHI | GGATCC | 2 cut(s) | 257, 2359 |
| BanI | GGYRCC | 1 cut(s) | 1714 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 619, 651 |
| BbsI | GAAGAC | 4 cut(s) | 2873, 3280, 3366, 3802 |
| Bbv12I | GWGCWC | 1 cut(s) | 3991 |
| BbvI | GCAGC | 9 cut(s) | 940, 1555, 2443, 2576, 3022, 3044, 3496, 3880, 3932 |
| BceAI | ACGGC | 2 cut(s) | 73, 3248 |
| BciT130I | CCWGG | 5 cut(s) | 262, 312, 396, 453, 2111 |
| BciVI | GTATCC | 2 cut(s) | 184, 3205 |
| BclI | TGATCA | 3 cut(s) | 1774, 1993, 3103 |
| BcnI | CCSGG | 1 cut(s) | 1712 |
| BcoDI | GTCTC | 7 cut(s) | 578, 1313, 1946, 2179, 2552, 2580, 4112 |
| BcuI | ACTAGT | 1 cut(s) | 623 |
| BfmI | CTRYAG | 5 cut(s) | 692, 2562, 3292, 3459, 3555 |
| BfoI | RGCGCY | 2 cut(s) | 1718, 2570 |
| BfrI | CTTAAG | 1 cut(s) | 2036 |
| BfuAI | ACCTGC | 1 cut(s) | 3762 |
| BfuI | GTATCC | 2 cut(s) | 184, 3205 |
| BglII | AGATCT | 1 cut(s) | 679 |
| BlpI | GCTNAGC | 1 cut(s) | 1572 |
| BmcAI | AGTACT | 1 cut(s) | 1393 |
| Bme1390I | CCNGG | 6 cut(s) | 262, 312, 396, 453, 1712, 2111 |
| Bme18I | GGWCC | 9 cut(s) | 149, 398, 449, 821, 1849, 2107, 2422, 3751, 3943 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 4125 |
| BmeT110I | CYCGRG | 1 cut(s) | 101 |
| BmgBI | CACGTC | 1 cut(s) | 1679 |
| BmrFI | CCNGG | 6 cut(s) | 262, 312, 396, 453, 1712, 2111 |
| BmtI | GCTAGC | 2 cut(s) | 1962, 2375 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1272, 3681 |
| BpiI | GAAGAC | 4 cut(s) | 2873, 3280, 3366, 3802 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3467, 3499 |
| BpmI | CTGGAG | 2 cut(s) | 1103, 2079 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2595 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1572 |
| BpuMI | CCSGG | 1 cut(s) | 1712 |
| Bsa29I | ATCGAT | 1 cut(s) | 75 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1124 |
| BsaHI | GRCGYC | 2 cut(s) | 307, 1715 |
| BsaJI | CCNNGG | 7 cut(s) | 45, 401, 673, 748, 816, 2338, 2967 |
| BsaWI | WCCGGW | 4 cut(s) | 124, 170, 1148, 3574 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 376, 406 |
| Bse118I | RCCGGY | 1 cut(s) | 1148 |
| Bse21I | CCTNAGG | 2 cut(s) | 2130, 3861 |
| Bse3DI | GCAATG | 6 cut(s) | 351, 492, 1749, 1841, 2282, 3250 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1124 |
| BseAI | TCCGGA | 1 cut(s) | 124 |
| BseBI | CCWGG | 5 cut(s) | 262, 312, 396, 453, 2111 |
| BseCI | ATCGAT | 1 cut(s) | 75 |
| BseDI | CCNNGG | 7 cut(s) | 45, 401, 673, 748, 816, 2338, 2967 |
| BseJI | GATNNNNATC | 1 cut(s) | 1124 |
| BseMI | GCAATG | 6 cut(s) | 351, 492, 1749, 1841, 2282, 3250 |
| BseRI | GAGGAG | 5 cut(s) | 32, 1832, 2300, 2471, 2489 |
| BseSI | GKGCMC | 2 cut(s) | 534, 3341 |
| BseXI | GCAGC | 9 cut(s) | 940, 1555, 2443, 2576, 3022, 3044, 3496, 3880, 3932 |
| BsgI | GTGCAG | 2 cut(s) | 1653, 3495 |
| Bsh1236I | CGCG | 2 cut(s) | 2969, 3012 |
| Bsh1285I | CGRYCG | 2 cut(s) | 75, 4050 |
| BshFI | GGCC | 4 cut(s) | 2047, 2230, 2669, 3783 |
| BshNI | GGYRCC | 1 cut(s) | 1714 |
| BshTI | ACCGGT | 1 cut(s) | 1148 |
| BshVI | ATCGAT | 1 cut(s) | 75 |
| BsiEI | CGRYCG | 2 cut(s) | 75, 4050 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3991 |
| BsiHKCI | CYCGRG | 1 cut(s) | 101 |
| BsiSI | CCGG | 6 cut(s) | 125, 171, 1149, 1712, 3575, 3780 |
| BslFI | GGGAC | 5 cut(s) | 834, 2241, 2408, 2725, 3622 |
| BsmAI | GTCTC | 7 cut(s) | 578, 1313, 1946, 2179, 2552, 2580, 4112 |
| BsmFI | GGGAC | 5 cut(s) | 834, 2241, 2408, 2725, 3622 |
| BsmI | GAATGC | 2 cut(s) | 2731, 2853 |
| BsnI | GGCC | 4 cut(s) | 2047, 2230, 2669, 3783 |
| BsoBI | CYCGRG | 1 cut(s) | 101 |
| Bsp1286I | GDGCHC | 3 cut(s) | 534, 3341, 3991 |
| Bsp13I | TCCGGA | 1 cut(s) | 124 |
| Bsp1407I | TGTACA | 2 cut(s) | 842, 2784 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1572 |
| Bsp19I | CCATGG | 2 cut(s) | 401, 2338 |
| BspANI | GGCC | 4 cut(s) | 2047, 2230, 2669, 3783 |
| BspDI | ATCGAT | 1 cut(s) | 75 |
| BspEI | TCCGGA | 1 cut(s) | 124 |
| BspFNI | CGCG | 2 cut(s) | 2969, 3012 |
| BspHI | TCATGA | 1 cut(s) | 3181 |
| BspMAI | CTGCAG | 2 cut(s) | 696, 2566 |
| BspMI | ACCTGC | 1 cut(s) | 3762 |
| BspOI | GCTAGC | 2 cut(s) | 1962, 2375 |
| BspPI | GGATC | 6 cut(s) | 217, 252, 265, 1658, 2354, 2367 |
| BspQI | GCTCTTC | 3 cut(s) | 1881, 2189, 4074 |
| BspT107I | GGYRCC | 1 cut(s) | 1714 |
| BspTI | CTTAAG | 1 cut(s) | 2036 |
| BsrDI | GCAATG | 6 cut(s) | 351, 492, 1749, 1841, 2282, 3250 |
| BsrFI | RCCGGY | 1 cut(s) | 1148 |
| BsrGI | TGTACA | 2 cut(s) | 842, 2784 |
| BssAI | RCCGGY | 1 cut(s) | 1148 |
| BssECI | CCNNGG | 7 cut(s) | 45, 401, 673, 748, 816, 2338, 2967 |
| BssNI | GRCGYC | 2 cut(s) | 307, 1715 |
| BssT1I | CCWWGG | 4 cut(s) | 401, 748, 816, 2338 |
| Bst2UI | CCWGG | 5 cut(s) | 262, 312, 396, 453, 2111 |
| Bst6I | CTCTTC | 7 cut(s) | 1588, 1881, 2189, 2904, 3861, 4074, 4076 |
| BstACI | GRCGYC | 2 cut(s) | 307, 1715 |
| BstAFI | CTTAAG | 1 cut(s) | 2036 |
| BstAUI | TGTACA | 2 cut(s) | 842, 2784 |
| BstC8I | GCNNGC | 9 cut(s) | 1566, 1960, 1964, 2087, 2232, 2373, 2584, 3598, 3925 |
| BstDSI | CCRYGG | 4 cut(s) | 401, 673, 2338, 2967 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 101, 3426 |
| BstFNI | CGCG | 2 cut(s) | 2969, 3012 |
| BstH2I | RGCGCY | 2 cut(s) | 1718, 2570 |
| BstHHI | GCGC | 3 cut(s) | 1717, 2569, 3014 |
| BstMAI | GTCTC | 7 cut(s) | 578, 1313, 1946, 2179, 2552, 2580, 4112 |
| BstMCI | CGRYCG | 2 cut(s) | 75, 4050 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 710, 2060, 2892, 3224, 3240, 3754 |
| BstNI | CCWGG | 5 cut(s) | 262, 312, 396, 453, 2111 |
| BstNSI | RCATGY | 5 cut(s) | 70, 538, 893, 1330, 2125 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1272, 3681 |
| BstSCI | CCNGG | 6 cut(s) | 260, 310, 394, 451, 1710, 2109 |
| BstSFI | CTRYAG | 5 cut(s) | 692, 2562, 3292, 3459, 3555 |
| BstSLI | GKGCMC | 2 cut(s) | 534, 3341 |
| BstUI | CGCG | 2 cut(s) | 2969, 3012 |
| BstV1I | GCAGC | 9 cut(s) | 940, 1555, 2443, 2576, 3022, 3044, 3496, 3880, 3932 |
| BstV2I | GAAGAC | 4 cut(s) | 2873, 3280, 3366, 3802 |
| BstX2I | RGATCY | 3 cut(s) | 257, 679, 2359 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1523 |
| BstYI | RGATCY | 3 cut(s) | 257, 679, 2359 |
| Bsu15I | ATCGAT | 1 cut(s) | 75 |
| Bsu36I | CCTNAGG | 2 cut(s) | 2130, 3861 |
| BsuI | GTATCC | 2 cut(s) | 184, 3205 |
| BsuRI | GGCC | 4 cut(s) | 2047, 2230, 2669, 3783 |
| BsuTUI | ATCGAT | 1 cut(s) | 75 |
| BtgI | CCRYGG | 4 cut(s) | 401, 673, 2338, 2967 |
| BtrI | CACGTC | 1 cut(s) | 1679 |
| BveI | ACCTGC | 1 cut(s) | 3762 |
| Cac8I | GCNNGC | 9 cut(s) | 1566, 1960, 1964, 2087, 2232, 2373, 2584, 3598, 3925 |
| CaiI | CAGNNNCTG | 2 cut(s) | 437, 3038 |
| CciI | TCATGA | 1 cut(s) | 3181 |
| CfoI | GCGC | 3 cut(s) | 1717, 2569, 3014 |
| Cfr10I | RCCGGY | 1 cut(s) | 1148 |
| Cfr42I | CCGCGG | 1 cut(s) | 2970 |
| ClaI | ATCGAT | 1 cut(s) | 75 |
| CseI | GACGC | 1 cut(s) | 296 |
| CspAI | ACCGGT | 1 cut(s) | 1148 |
| DinI | GGCGCC | 1 cut(s) | 1716 |
| DraI | TTTAAA | 2 cut(s) | 222, 3399 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1327 |
| DriI | GACNNNNNGTC | 1 cut(s) | 4125 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1327 |
| Eam1104I | CTCTTC | 7 cut(s) | 1588, 1881, 2189, 2904, 3861, 4074, 4076 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 4125 |
| EarI | CTCTTC | 7 cut(s) | 1588, 1881, 2189, 2904, 3861, 4074, 4076 |
| Eco130I | CCWWGG | 4 cut(s) | 401, 748, 816, 2338 |
| Eco147I | AGGCCT | 1 cut(s) | 2047 |
| Eco32I | GATATC | 2 cut(s) | 1192, 2016 |
| Eco47I | GGWCC | 9 cut(s) | 149, 398, 449, 821, 1849, 2107, 2422, 3751, 3943 |
| Eco47III | AGCGCT | 1 cut(s) | 2568 |
| Eco81I | CCTNAGG | 2 cut(s) | 2130, 3861 |
| Eco88I | CYCGRG | 1 cut(s) | 101 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 101, 3426 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1849, 2422, 2667 |
| EcoRI | GAATTC | 4 cut(s) | 772, 1249, 1343, 2960 |
| EcoRII | CCWGG | 5 cut(s) | 260, 310, 394, 451, 2109 |
| EcoRV | GATATC | 2 cut(s) | 1192, 2016 |
| EcoT14I | CCWWGG | 4 cut(s) | 401, 748, 816, 2338 |
| EcoT22I | ATGCAT | 2 cut(s) | 1646, 3305 |
| EgeI | GGCGCC | 1 cut(s) | 1716 |
| EheI | GGCGCC | 1 cut(s) | 1716 |
| ErhI | CCWWGG | 4 cut(s) | 401, 748, 816, 2338 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 2218, 2250, 2883, 2915, 3183, 3215, 3753, 3785 |
| FaqI | GGGAC | 5 cut(s) | 834, 2241, 2408, 2725, 3622 |
| FauNDI | CATATG | 2 cut(s) | 1156, 2493 |
| FbaI | TGATCA | 3 cut(s) | 1774, 1993, 3103 |
| FblI | GTMKAC | 1 cut(s) | 2334 |
| GlaI | GCGC | 3 cut(s) | 1716, 2568, 3013 |
| GsuI | CTGGAG | 2 cut(s) | 1103, 2079 |
| HaeII | RGCGCY | 2 cut(s) | 1718, 2570 |
| HaeIII | GGCC | 4 cut(s) | 2047, 2230, 2669, 3783 |
| HapII | CCGG | 6 cut(s) | 125, 171, 1149, 1712, 3575, 3780 |
| HgaI | GACGC | 1 cut(s) | 296 |
| HhaI | GCGC | 3 cut(s) | 1717, 2569, 3014 |
| Hin1I | GRCGYC | 2 cut(s) | 307, 1715 |
| Hin6I | GCGC | 3 cut(s) | 1715, 2567, 3012 |
| HinP1I | GCGC | 3 cut(s) | 1715, 2567, 3012 |
| HincII | GTYRAC | 3 cut(s) | 607, 1282, 4032 |
| HindII | GTYRAC | 3 cut(s) | 607, 1282, 4032 |
| HindIII | AAGCTT | 4 cut(s) | 285, 3096, 3173, 3216 |
| HpaII | CCGG | 6 cut(s) | 125, 171, 1149, 1712, 3575, 3780 |
| HphI | GGTGA | 3 cut(s) | 876, 3098, 3335 |
| Hpy99I | CGWCG | 2 cut(s) | 59, 1683 |
| HpyCH4IV | ACGT | 6 cut(s) | 609, 1400, 1678, 2692, 3124, 3611 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 710, 2060, 2892, 3224, 3240, 3754 |
| HpySE526I | ACGT | 6 cut(s) | 609, 1400, 1678, 2692, 3124, 3611 |
| Hsp92I | GRCGYC | 2 cut(s) | 307, 1715 |
| HspAI | GCGC | 3 cut(s) | 1715, 2567, 3012 |
| KasI | GGCGCC | 1 cut(s) | 1714 |
| Kpn2I | TCCGGA | 1 cut(s) | 124 |
| Ksp22I | TGATCA | 3 cut(s) | 1774, 1993, 3103 |
| KspI | CCGCGG | 1 cut(s) | 2970 |
| LguI | GCTCTTC | 3 cut(s) | 1881, 2189, 4074 |
| LmnI | GCTCC | 4 cut(s) | 204, 1390, 1819, 2060 |
| Lsp1109I | GCAGC | 9 cut(s) | 940, 1555, 2443, 2576, 3022, 3044, 3496, 3880, 3932 |
| MaeII | ACGT | 6 cut(s) | 609, 1400, 1678, 2692, 3124, 3611 |
| MaeIII | GTNAC | 8 cut(s) | 892, 938, 1043, 1706, 1745, 2877, 3308, 4015 |
| MfeI | CAATTG | 5 cut(s) | 1129, 1823, 2022, 2406, 3978 |
| MflI | RGATCY | 3 cut(s) | 257, 679, 2359 |
| MhlI | GDGCHC | 3 cut(s) | 534, 3341, 3991 |
| Mly113I | GGCGCC | 1 cut(s) | 1715 |
| MlyI | GAGTC | 7 cut(s) | 1001, 1262, 2582, 3473, 3644, 4000, 4129 |
| MmeI | TCCRAC | 3 cut(s) | 1720, 2581, 2855 |
| Mph1103I | ATGCAT | 2 cut(s) | 1646, 3305 |
| MroI | TCCGGA | 1 cut(s) | 124 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1875 |
| MslI | CAYNNNNRTG | 6 cut(s) | 767, 1352, 1521, 1787, 1933, 2169 |
| MspA1I | CMGCKG | 6 cut(s) | 239, 953, 1568, 2969, 3035, 3600 |
| MspCI | CTTAAG | 1 cut(s) | 2036 |
| MspI | CCGG | 6 cut(s) | 125, 171, 1149, 1712, 3575, 3780 |
| MspR9I | CCNGG | 6 cut(s) | 262, 312, 396, 453, 1712, 2111 |
| MunI | CAATTG | 5 cut(s) | 1129, 1823, 2022, 2406, 3978 |
| Mva1269I | GAATGC | 2 cut(s) | 2731, 2853 |
| MvaI | CCWGG | 5 cut(s) | 262, 312, 396, 453, 2111 |
| MvnI | CGCG | 2 cut(s) | 2969, 3012 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 710, 2060, 2892, 3224, 3240, 3754 |
| NarI | GGCGCC | 1 cut(s) | 1715 |
| NciI | CCSGG | 1 cut(s) | 1712 |
| NcoI | CCATGG | 2 cut(s) | 401, 2338 |
| NdeI | CATATG | 2 cut(s) | 1156, 2493 |
| NheI | GCTAGC | 2 cut(s) | 1958, 2371 |
| NmeAIII | GCCGAG | 2 cut(s) | 70, 141 |
| NmuCI | GTSAC | 2 cut(s) | 938, 3308 |
| NsiI | ATGCAT | 2 cut(s) | 1646, 3305 |
| NspI | RCATGY | 5 cut(s) | 70, 538, 893, 1330, 2125 |
| OliI | CACNNNNGTG | 2 cut(s) | 1352, 1787 |
| PaeR7I | CTCGAG | 1 cut(s) | 101 |
| PagI | TCATGA | 1 cut(s) | 3181 |
| PceI | AGGCCT | 1 cut(s) | 2047 |
| PciI | ACATGT | 4 cut(s) | 66, 534, 889, 1326 |
| PciSI | GCTCTTC | 3 cut(s) | 1881, 2189, 4074 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 2360, 2689 |
| PctI | GAATGC | 2 cut(s) | 2731, 2853 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1875 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1886, 2237 |
| PinAI | ACCGGT | 1 cut(s) | 1148 |
| Ple19I | CGATCG | 1 cut(s) | 75 |
| PleI | GAGTC | 7 cut(s) | 1000, 1262, 2581, 3472, 3643, 4000, 4129 |
| PluTI | GGCGCC | 1 cut(s) | 1718 |
| PpsI | GAGTC | 7 cut(s) | 1000, 1262, 2581, 3472, 3643, 4000, 4129 |
| PpuMI | RGGWCCY | 2 cut(s) | 1849, 2422 |
| PscI | ACATGT | 4 cut(s) | 66, 534, 889, 1326 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1272, 3681 |
| PshBI | ATTAAT | 1 cut(s) | 2922 |
| Psp5II | RGGWCCY | 2 cut(s) | 1849, 2422 |
| Psp6I | CCWGG | 5 cut(s) | 260, 310, 394, 451, 2109 |
| PspGI | CCWGG | 5 cut(s) | 260, 310, 394, 451, 2109 |
| PspPPI | RGGWCCY | 2 cut(s) | 1849, 2422 |
| PstI | CTGCAG | 2 cut(s) | 696, 2566 |
| PstNI | CAGNNNCTG | 2 cut(s) | 437, 3038 |
| PsuI | RGATCY | 3 cut(s) | 257, 679, 2359 |
| PvuI | CGATCG | 1 cut(s) | 75 |
| PvuII | CAGCTG | 5 cut(s) | 239, 953, 1568, 3035, 3600 |
| RseI | CAYNNNNRTG | 6 cut(s) | 767, 1352, 1521, 1787, 1933, 2169 |
| SacII | CCGCGG | 1 cut(s) | 2970 |
| SapI | GCTCTTC | 3 cut(s) | 1881, 2189, 4074 |
| SbfI | CCTGCAGG | 1 cut(s) | 696 |
| ScaI | AGTACT | 1 cut(s) | 1393 |
| SchI | GAGTC | 7 cut(s) | 1001, 1262, 2582, 3473, 3644, 4000, 4129 |
| ScrFI | CCNGG | 6 cut(s) | 262, 312, 396, 453, 1712, 2111 |
| SdaI | CCTGCAGG | 1 cut(s) | 696 |
| SduI | GDGCHC | 3 cut(s) | 534, 3341, 3991 |
| SfcI | CTRYAG | 5 cut(s) | 692, 2562, 3292, 3459, 3555 |
| SfoI | GGCGCC | 1 cut(s) | 1716 |
| Sfr274I | CTCGAG | 1 cut(s) | 101 |
| Sfr303I | CCGCGG | 1 cut(s) | 2970 |
| SgrBI | CCGCGG | 1 cut(s) | 2970 |
| SinI | GGWCC | 9 cut(s) | 149, 398, 449, 821, 1849, 2107, 2422, 3751, 3943 |
| SlaI | CTCGAG | 1 cut(s) | 101 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 767, 1352, 1521, 1787, 1933, 2169 |
| SpeI | ACTAGT | 1 cut(s) | 623 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 696 |
| SseBI | AGGCCT | 1 cut(s) | 2047 |
| SspDI | GGCGCC | 1 cut(s) | 1714 |
| SspI | AATATT | 3 cut(s) | 734, 1369, 3067 |
| StuI | AGGCCT | 1 cut(s) | 2047 |
| StyD4I | CCNGG | 6 cut(s) | 260, 310, 394, 451, 1710, 2109 |
| StyI | CCWWGG | 4 cut(s) | 401, 748, 816, 2338 |
| TaiI | ACGT | 6 cut(s) | 612, 1403, 1681, 2695, 3127, 3614 |
| TatI | WGTACW | 5 cut(s) | 842, 1391, 2784, 3789, 3931 |
| TauI | GCSGC | 3 cut(s) | 44, 2275, 2886 |
| TseFI | GTSAC | 2 cut(s) | 938, 3308 |
| TseI | GCWGC | 9 cut(s) | 953, 1568, 2431, 2564, 3032, 3035, 3509, 3893, 3920 |
| Tsp45I | GTSAC | 2 cut(s) | 938, 3308 |
| TspGWI | ACGGA | 5 cut(s) | 596, 690, 1625, 2352, 3367 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1886, 2237 |
| Vha464I | CTTAAG | 1 cut(s) | 2036 |
| VpaK11BI | GGWCC | 9 cut(s) | 149, 398, 449, 821, 1849, 2107, 2422, 3751, 3943 |
| VspI | ATTAAT | 1 cut(s) | 2922 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 101, 3426 |
| XapI | RAATTY | 8 cut(s) | 772, 922, 1204, 1249, 1343, 2810, 2936, 2960 |
| XbaI | TCTAGA | 2 cut(s) | 865, 2068 |
| XceI | RCATGY | 5 cut(s) | 70, 538, 893, 1330, 2125 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1523 |
| XhoI | CTCGAG | 1 cut(s) | 101 |
| XmiI | GTMKAC | 1 cut(s) | 2334 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1875 |
| ZrmI | AGTACT | 1 cut(s) | 1393 |
| Zsp2I | ATGCAT | 2 cut(s) | 1646, 3305 |