Rorug05G0050500

Protein ROOT HAIR DEFECTIVE 3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000525
Physical Location & Seq
Reverse (-)
4418014 .. 4420147
2134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0050500.1

Sequence Viewer

Length: 705 bp
ATGCGAATTTGTTTGACGTTTGTGATTTTGGCGCATAGGCTGGACCGAAGAAAAGTAATAACGAGGGATGAGTGGGAGAAGAAGCTTAATGATGTAAAGATCAAGAAAGAGGATATGAATAAACTTGTGATGAATTTCCTTGTGACTGAGGGTTATGTCGATGCGGCGGAGAAATTCCGAAAGGAATCTGGAACCGAACAAAATATAACTGTCTATCTCAATTTATTTGATGGTCTGTGGAAATTCTGTCTTCAGATTCTGGACACAAATCCCCAATTATTTTTCCCTCTCCAACAAAGGTTGATAGAACTAATTAGGAATGGAAAGGTAAAAGAGGCTCTTGAGTTTGCTCTCCAAGAGGAGAAGAAAATGCTATTGGCGTGGCTTTTAGGCAGGGATGCGGCCCAGGGTTGGTGGATCTGTGCTCGATGCGGGTTCTGGCGTCTCCACTGGTTCTGGGATCGGGGAGGTGGATGGGAGCTAGCTCTCATGGCAGGGTCGATCCGGGTGAGGCTCTGTTCCTTTCTTCCGGGTTCCAGGGTGGTCGGCGATGTGGTGCGGTGGTGGTGCTGCGCTGGGCTACGGCGCGGCGGTGCAAGGCTACGGCACGGCGATGTGGGGCTATGGCGCAGCGGAGTGGTGTCGGCGGCGTGCGCTGCCAACCGGTTTGGTGTGCCACAGCGCCTCCGGAAGTGTGGTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RHD3

Protein Analysis

234

Amino Acids

27.09

Weight (kDa)

9.76

Isoelectric Point (pI)

46.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LisH PF08513 37 - 63 2.9e-09 LisH
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45160
fragaria_vesca FvH4_3g11890
malus_domestica MD00G1023300.v1.1 MD00G1023500.v1.1 MD00G1046300.v1.1 MD00G1046400.v1.1 MD00G1047200.v1.1 MD05G1180600.v1.1 MD05G1256900.v1.1 MD05G1257200.v1.1 MD05G1257300.v1.1 MD05G1257400.v1.1 MD05G1257900.v1.1 MD05G1258000.v1.1 MD10G1213100.v1.1 MD10G1237400.v1.1
prunus_persica Prupe.4G106400_v2.0.a1 Prupe.4G106400_v2.0.a1 Prupe.4G106900_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.I001700_v2.0.a1
pyrus_communis pycom05g23620 pycom05g23630 pycom05g23880 pycom05g24090 pycom05g24270 pycom10g19870
rosa_chinensis RchiOBHm_Chr5g0019311 RchiOBHm_Chr5g0019391 RchiOBHm_Chr5g0019401 RchiOBHm_Chr7g0226131 RchiOBHm_Chr7g0226141 RchiOBHm_Chr7g0226161
rosa_laevigata RLG00000001766 RLG00000001767 RLG00000032437 RLG00000032441 RLG00000032445
rosa_multiflora Rmu_sc0001350.1_g000022 Rmu_sc0001350.1_g000031 Rmu_sc0002141.1_g000028 Rmu_sc0002759.1_g000037 Rmu_sc0002759.1_g000039 Rmu_sc0005292.1_g000004 Rmu_sc0005292.1_g000050
rosa_roxburghii Rroxscaffold_1G00058650 Rroxscaffold_1G00058670 Rroxscaffold_1G00074270 Rroxscaffold_2G00108890 Rroxscaffold_2G00125570
rosa_rugosa Rorug05G0050100 Rorug05G0050200 Rorug05G0050300 Rorug05G0050500 Rorug05G0050600 Rorug05G0050700
rosa_samantha Rh5AG140700 Rh5AG141000 Rh5AG141300 Rh5AG390000 Rh5BG139700 Rh5BG139800 Rh5BG139900 Rh5BG140000 Rh5CG151000 Rh5CG151500 Rh5CG151600 Rh5DG140200 Rh5DG140400 Rh5DG140600 Rh7AG368100 Rh7AG381400 Rh7AG381700 Rh7CG386400 Rh7CG400900 Rh7CG401200 Rh7DG380400 Rh7DG380500
rosa_wichuraiana Rw5G012510 Rw5G012530 Rw5G012540 Rw7G031980 Rw7G031990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 588
AccIII TCCGGA 1 cut(s) 687
AciI CCGC 9 cut(s) 164, 167, 401, 432, 559, 588, 591, 633, 647
AclWI GGATC 3 cut(s) 425, 468, 496
AcsI RAATTY 4 cut(s) 6, 133, 173, 242
AcuI CTGAAG 1 cut(s) 236
AcyI GRCGYC 1 cut(s) 442
AfiI CCNNNNNNNGG 1 cut(s) 411
AgeI ACCGGT 1 cut(s) 663
AjnI CCWGG 2 cut(s) 405, 536
AjuI GAANNNNNNNTTGG 2 cut(s) 359, 391
AluBI AGCT 3 cut(s) 85, 481, 485
AluI AGCT 3 cut(s) 85, 481, 485
Alw21I GWGCWC 1 cut(s) 427
Alw26I GTCTC 1 cut(s) 449
AlwI GGATC 3 cut(s) 425, 468, 496
AlwNI CAGNNNCTG 1 cut(s) 259
Aor13HI TCCGGA 1 cut(s) 687
AoxI GGCC 1 cut(s) 402
ApeKI GCWGC 3 cut(s) 570, 630, 656
ApoI RAATTY 4 cut(s) 6, 133, 173, 242
AsiGI ACCGGT 1 cut(s) 663
AspLEI GCGC 6 cut(s) 34, 575, 588, 630, 656, 684
AspS9I GGNCC 2 cut(s) 43, 403
AsuC2I CCSGG 2 cut(s) 506, 531
AsuHPI GGTGA 1 cut(s) 520
AsuNHI GCTAGC 1 cut(s) 481
AvaII GGWCC 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 427
BbvI GCAGC 3 cut(s) 557, 642, 643
BccI CCATC 2 cut(s) 224, 468
BceAI ACGGC 3 cut(s) 599, 620, 625
BciT130I CCWGG 2 cut(s) 407, 538
BcnI CCSGG 2 cut(s) 506, 531
BcoDI GTCTC 1 cut(s) 449
BfaI CTAG 1 cut(s) 482
BfoI RGCGCY 1 cut(s) 685
BisI GCNGC 7 cut(s) 165, 402, 571, 589, 631, 648, 657
BlsI GCNGC 7 cut(s) 166, 403, 572, 590, 632, 649, 658
Bme1390I CCNGG 4 cut(s) 407, 506, 531, 538
Bme18I GGWCC 1 cut(s) 43
BmgT120I GGNCC 2 cut(s) 43, 403
BmiI GGNNCC 2 cut(s) 193, 535
BmrFI CCNGG 4 cut(s) 407, 506, 531, 538
BmsI GCATC 3 cut(s) 151, 388, 419
BmtI GCTAGC 1 cut(s) 485
BpiI GAAGAC 1 cut(s) 242
BpuEI CTTGAG 1 cut(s) 362
BpuMI CCSGG 2 cut(s) 506, 531
BsaHI GRCGYC 1 cut(s) 442
BsaJI CCNNGG 3 cut(s) 405, 406, 537
BsaWI WCCGGW 2 cut(s) 663, 687
BsaXI ACNNNNNCTCC 2 cut(s) 669, 699
Bsc4I CCNNNNNNNGG 1 cut(s) 411
Bse118I RCCGGY 1 cut(s) 663
Bse1I ACTGG 1 cut(s) 455
BseAI TCCGGA 1 cut(s) 687
BseBI CCWGG 2 cut(s) 407, 538
BseDI CCNNGG 3 cut(s) 405, 406, 537
BseGI GGATG 3 cut(s) 73, 403, 479
BseLI CCNNNNNNNGG 1 cut(s) 411
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 455
BseRI GAGGAG 1 cut(s) 374
BseXI GCAGC 3 cut(s) 557, 642, 643
BseYI CCCAGC 1 cut(s) 575
Bsh1236I CGCG 1 cut(s) 588
BshFI GGCC 1 cut(s) 404
BshTI ACCGGT 1 cut(s) 663
BsiHKAI GWGCWC 1 cut(s) 427
BsiSI CCGG 4 cut(s) 505, 530, 664, 688
BslI CCNNNNNNNGG 1 cut(s) 411
BsmAI GTCTC 1 cut(s) 449
BsmBI CGTCTC 1 cut(s) 449
BsnI GGCC 1 cut(s) 404
Bsp1286I GDGCHC 1 cut(s) 427
Bsp13I TCCGGA 1 cut(s) 687
Bsp143I GATC 4 cut(s) 99, 417, 460, 501
BspACI CCGC 9 cut(s) 164, 167, 401, 432, 559, 588, 591, 633, 647
BspANI GGCC 1 cut(s) 404
BspCNI CTCAG 1 cut(s) 139
BspEI TCCGGA 1 cut(s) 687
BspFNI CGCG 1 cut(s) 588
BspLI GGNNCC 2 cut(s) 193, 535
BspOI GCTAGC 1 cut(s) 485
BspPI GGATC 3 cut(s) 425, 468, 496
BsrFI RCCGGY 1 cut(s) 663
BsrI ACTGG 1 cut(s) 455
BssAI RCCGGY 1 cut(s) 663
BssECI CCNNGG 3 cut(s) 405, 406, 537
BssMI GATC 4 cut(s) 99, 417, 460, 501
BssNI GRCGYC 1 cut(s) 442
Bst2UI CCWGG 2 cut(s) 407, 538
Bst4CI ACNGT 1 cut(s) 211
BstACI GRCGYC 1 cut(s) 442
BstC8I GCNNGC 2 cut(s) 483, 652
BstDEI CTNAG 1 cut(s) 147
BstF5I GGATG 3 cut(s) 73, 403, 479
BstFNI CGCG 1 cut(s) 588
BstH2I RGCGCY 1 cut(s) 685
BstHHI GCGC 6 cut(s) 34, 575, 588, 630, 656, 684
BstKTI GATC 4 cut(s) 102, 420, 463, 504
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 4 cut(s) 99, 417, 460, 501
BstMWI GCNNNNNNNGC 3 cut(s) 491, 653, 656
BstNI CCWGG 2 cut(s) 407, 538
BstSCI CCNGG 4 cut(s) 405, 504, 529, 536
BstUI CGCG 1 cut(s) 588
BstV1I GCAGC 3 cut(s) 557, 642, 643
BstV2I GAAGAC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 417
BstYI RGATCY 1 cut(s) 417
BsuRI GGCC 1 cut(s) 404
BtgZI GCGATG 2 cut(s) 564, 627
BtsCI GGATG 3 cut(s) 73, 403, 479
BtsIMutI CAGTG 1 cut(s) 448
Cac8I GCNNGC 2 cut(s) 483, 652
CaiI CAGNNNCTG 1 cut(s) 259
CfoI GCGC 6 cut(s) 34, 575, 588, 630, 656, 684
Cfr10I RCCGGY 1 cut(s) 663
Cfr13I GGNCC 2 cut(s) 43, 403
CseI GACGC 1 cut(s) 431
CspAI ACCGGT 1 cut(s) 663
CviAII CATG 1 cut(s) 490
DdeI CTNAG 1 cut(s) 147
DpnI GATC 4 cut(s) 101, 419, 462, 503
DpnII GATC 4 cut(s) 99, 417, 460, 501
EciI GGCGGA 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 236
EcoRII CCWGG 2 cut(s) 405, 536
Esp3I CGTCTC 1 cut(s) 449
FaeI CATG 1 cut(s) 493
FaiI YATR 6 cut(s) 36, 116, 156, 206, 491, 625
FalI AAGNNNNNCTT 2 cut(s) 324, 356
FatI CATG 1 cut(s) 489
FauI CCCGC 1 cut(s) 425
Fnu4HI GCNGC 7 cut(s) 165, 402, 571, 589, 631, 648, 657
FokI GGATG 3 cut(s) 80, 410, 486
Fsp4HI GCNGC 7 cut(s) 165, 402, 571, 589, 631, 648, 657
FspBI CTAG 1 cut(s) 482
GlaI GCGC 6 cut(s) 33, 574, 587, 629, 655, 683
GluI GCNGC 7 cut(s) 165, 402, 571, 589, 631, 648, 657
GsaI CCCAGC 1 cut(s) 579
HaeII RGCGCY 1 cut(s) 685
HaeIII GGCC 1 cut(s) 404
HapII CCGG 4 cut(s) 505, 530, 664, 688
HgaI GACGC 1 cut(s) 431
HhaI GCGC 6 cut(s) 34, 575, 588, 630, 656, 684
Hin1I GRCGYC 1 cut(s) 442
Hin1II CATG 1 cut(s) 493
Hin6I GCGC 6 cut(s) 32, 573, 586, 628, 654, 682
HinP1I GCGC 6 cut(s) 32, 573, 586, 628, 654, 682
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 2 cut(s) 185, 256
HpaII CCGG 4 cut(s) 505, 530, 664, 688
HphI GGTGA 1 cut(s) 520
Hpy188I TCNGA 2 cut(s) 179, 255
Hpy188III TCNNGA 5 cut(s) 103, 189, 260, 341, 688
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 1 cut(s) 596
HpyF10VI GCNNNNNNNGC 3 cut(s) 491, 653, 656
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 1 cut(s) 17
Hsp92I GRCGYC 1 cut(s) 442
Hsp92II CATG 1 cut(s) 493
HspAI GCGC 6 cut(s) 32, 573, 586, 628, 654, 682
Kpn2I TCCGGA 1 cut(s) 687
Kzo9I GATC 4 cut(s) 99, 417, 460, 501
LmnI GCTCC 1 cut(s) 478
Lsp1109I GCAGC 3 cut(s) 557, 642, 643
LweI GCATC 3 cut(s) 151, 388, 419
MaeI CTAG 1 cut(s) 482
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 1 cut(s) 142
MalI GATC 4 cut(s) 101, 419, 462, 503
MboI GATC 4 cut(s) 99, 417, 460, 501
MboII GAAGA 5 cut(s) 60, 91, 242, 376, 518
MflI RGATCY 1 cut(s) 417
MhlI GDGCHC 1 cut(s) 427
MluCI AATT 7 cut(s) 6, 133, 173, 220, 242, 275, 312
MmeI TCCRAC 1 cut(s) 316
MnlI CCTC 9 cut(s) 57, 103, 142, 297, 328, 352, 461, 504, 695
MroI TCCGGA 1 cut(s) 687
MseI TTAA 1 cut(s) 87
MslI CAYNNNNRTG 1 cut(s) 612
MspA1I CMGCKG 1 cut(s) 633
MspI CCGG 4 cut(s) 505, 530, 664, 688
MspR9I CCNGG 4 cut(s) 407, 506, 531, 538
MvaI CCWGG 2 cut(s) 407, 538
MvnI CGCG 1 cut(s) 588
MwoI GCNNNNNNNGC 3 cut(s) 491, 653, 656
NciI CCSGG 2 cut(s) 506, 531
NdeII GATC 4 cut(s) 99, 417, 460, 501
NheI GCTAGC 1 cut(s) 481
NlaIII CATG 1 cut(s) 493
NlaIV GGNNCC 2 cut(s) 193, 535
NmuCI GTSAC 1 cut(s) 142
PasI CCCWGGG 1 cut(s) 406
PfeI GAWTC 2 cut(s) 185, 256
PinAI ACCGGT 1 cut(s) 663
PkrI GCNGC 7 cut(s) 166, 403, 572, 590, 632, 649, 658
Psp6I CCWGG 2 cut(s) 405, 536
PspFI CCCAGC 1 cut(s) 575
PspGI CCWGG 2 cut(s) 405, 536
PspN4I GGNNCC 2 cut(s) 193, 535
PspPI GGNCC 2 cut(s) 43, 403
PstNI CAGNNNCTG 1 cut(s) 259
PsuI RGATCY 1 cut(s) 417
RseI CAYNNNNRTG 1 cut(s) 612
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 7 cut(s) 165, 402, 571, 589, 631, 648, 657
Sau3AI GATC 4 cut(s) 99, 417, 460, 501
Sau96I GGNCC 2 cut(s) 43, 403
ScrFI CCNGG 4 cut(s) 407, 506, 531, 538
SduI GDGCHC 1 cut(s) 427
SetI ASST 7 cut(s) 20, 87, 302, 330, 472, 483, 487
SfaNI GCATC 3 cut(s) 151, 388, 419
SinI GGWCC 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 612
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 7 cut(s) 6, 133, 173, 220, 242, 275, 312
SsiI CCGC 9 cut(s) 164, 167, 401, 432, 559, 588, 591, 633, 647
SspMI CTAG 1 cut(s) 482
StyD4I CCNGG 4 cut(s) 405, 504, 529, 536
TaaI ACNGT 1 cut(s) 211
TaiI ACGT 1 cut(s) 20
TaqI TCGA 3 cut(s) 159, 427, 500
TaqII GACCGA 1 cut(s) 60
TasI AATT 7 cut(s) 6, 133, 173, 220, 242, 275, 312
TauI GCSGC 4 cut(s) 167, 404, 591, 650
TfiI GAWTC 2 cut(s) 185, 256
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 1 cut(s) 455
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 3 cut(s) 570, 630, 656
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 2 cut(s) 131, 146
TspRI CASTG 1 cut(s) 455
VpaK11BI GGWCC 1 cut(s) 43
XapI RAATTY 4 cut(s) 6, 133, 173, 242
XspI CTAG 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.