Prupe.4G106900_v2.0.a1

Protein ROOT HAIR DEFECTIVE 3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000525
Physical Location & Seq
Reverse (-)
5584124 .. 5589524
5401 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G106900.1

Sequence Viewer

Length: 2130 bp
ATGGAGGAAGATTGCTGCGCCACGCAACTCATCTATGGAGATGGAGAGTTTAATGCTGATGGGCTCGACAAGTTCGTCAAAGAAGTGAAGCTTGCTGAGTGTGGACTCTCCTATGCTGTTGTTGCCATTATGGGTCAGAGCAGCGGGAGAAGCACTTTAATGAACCATCTGTTCCACACTAAGTTTAGGGAGATGGATGCAAACAGTGGAAGGAACCAAACAACGAAGGGTATTTGGATAGCCAAGTGTGTTGGCATTGAGCCTTGCACGATTGCCATGGATTTGGATTTGGAGGGTACTGCTGGCAAGGAGAGAGGCGAGGATGATACTGCATTCGAGAAGCAAAGCGCCATATTTGCCCTGACAGTTTCAGACATTGTGCTGATAAATATGTGTCAAGAATCAGATAAAGGTCTCGAGCAAGCTGCAATGAACCCTTCACTGGAAATGGTTTTTCAGGTTGTGATGCACTCATTCGTCCCCCGCAAAATGACGTTACTTTTTGTTATACACACAAAGACCCCGTTTGAAAATCTGGAGCCTGTTTTGAGGGAAGATATACAGAAGCTATGGGATGGAGTTCCGAAGCCCGAAGCCCATAACAGTACCCCCTTCAGTGATTTCTTTAGTGTAGAAGTAGTTACTTTGTCCAGTTATGAAGAGGAGGAGGAGAAGTTTAAGGAGGAGGTTGCTCAACTTAGGCAGCGCTTTTTCCATTCTATTTCTCCAGGAGGGCTTGCTGGTGATAGACGGGGTGTTGTTCCTGCCTCAGGATTTTCCTTTACTGCACAACAGATTTGGAAAGTAATCAAAGAGAACAAGGACCTGGATCTTCCCGCTCACAAGGTTATGGTTGCTACTGTTCGATGTGAAGAGATCGCCAACCGGGAATTCAATCAGTTGATCCATGATGGGGGTTGGTTGGCATTGGAAGAAGCTGTCCACACTGGTCCCGTACAAGGTTTTGGTAAAAGGCTCAGCTCCATTTTAAGCACTTATTTTTCAGAGTATGACATGGAGGCCATTTACTTTGACGAAGGTGTAAGGAACTCAAAACGACAACTGTTGGAGTCAAAAGCATTGGATTTTGTTTACCCTGCGTACACGACTATGTTGGGACATGTACATTCTAAAGCGCTTAAAAATTTTAAAGTGAGGCTAGAAGAATTGTTAAACAAAAGAGAAGGATTTACTTCATCTCTTCGTAGTTGTACTCAGTCTTCCATGCTTGAGTTTGACAAAGGATGTGCAGATGCTGCCATACAACAAGCTAATTGGGATGCTTCAAGAGTTATTCGCGAAAAACTACGACGTGATATAGATACACATGCATCATCCGTTTGTAGTGCAAAGTTGTCAGAATTGAATGTCAACTATGAGAAACAACTGTCTGCATCTTTAACTGGACCAGTAGAGGCTTTACTTGAATCTGGTGAAAAAGACACTTGGGCTTCAATAAGAAAACTTCTTAATCGTGAAACTGAAGTTGCAGTATCTACGTTTTCATCAACTGCAGTTGCCGATTTTGAGTTGGACAAAGAAACAATTGCCAAAATGTTGCAACATTTAAGGGATTACTCACGGAATGTGGTTGTGAAAAAAGCAAGAGAAGAGGCTGCAAAAATTATGATCCTCATGAAAGATCGGTTTTCCACAGTCTTTAATTATGACAGTGGTTCAATGCCTCGGGTTTGGACCAAGAAAGAAGACATTAGAAGTATTACCAAAGATGCTCACTCTGCTTCTATGAAGCTTTTATCAGTCATGGCTGCCATCCGCTTGGAGGAGAAGCCAGATAATATTGAAGAAACTCTCTTTTCTTCTCTGATGGATGGAACTGTTACTGTTTCATCGTCACAAGATAGGGGAATAGAAGCTTCTGCATACCCTCTTGCCTCAAACACTTGGGAAGAGGTTCCTTCAGAGGATACCTTAATTACTCCCGTGCAGTGCAAGTCCTTGTGGAGACAGTTCAAAACAGAGACTCAGTATAGTGTCACTCAAGCTATTTCAGCACAGGAGGCTTACAAGCGGAGTAACAACTGGTTGCCTCCTCCGTGGGCTATTATGGCAATGGCTGTTCTTGCTTTCAACCAATTTATGCTCCCACGACTACAAAAAAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RHD3

Protein Analysis

710

Amino Acids

79.8

Weight (kDa)

5.5

Isoelectric Point (pI)

44.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45160
fragaria_vesca FvH4_3g11890
malus_domestica MD00G1023300.v1.1 MD00G1023500.v1.1 MD00G1046300.v1.1 MD00G1046400.v1.1 MD00G1047200.v1.1 MD05G1180600.v1.1 MD05G1256900.v1.1 MD05G1257200.v1.1 MD05G1257300.v1.1 MD05G1257400.v1.1 MD05G1257900.v1.1 MD05G1258000.v1.1 MD10G1213100.v1.1 MD10G1237400.v1.1
prunus_persica Prupe.4G106400_v2.0.a1 Prupe.4G106400_v2.0.a1 Prupe.4G106900_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.I001700_v2.0.a1
pyrus_communis pycom05g23620 pycom05g23630 pycom05g23880 pycom05g24090 pycom05g24270 pycom10g19870
rosa_chinensis RchiOBHm_Chr5g0019311 RchiOBHm_Chr5g0019391 RchiOBHm_Chr5g0019401 RchiOBHm_Chr7g0226131 RchiOBHm_Chr7g0226141 RchiOBHm_Chr7g0226161
rosa_laevigata RLG00000001766 RLG00000001767 RLG00000032437 RLG00000032441 RLG00000032445
rosa_multiflora Rmu_sc0001350.1_g000022 Rmu_sc0001350.1_g000031 Rmu_sc0002141.1_g000028 Rmu_sc0002759.1_g000037 Rmu_sc0002759.1_g000039 Rmu_sc0005292.1_g000004 Rmu_sc0005292.1_g000050
rosa_roxburghii Rroxscaffold_1G00058650 Rroxscaffold_1G00058670 Rroxscaffold_1G00074270 Rroxscaffold_2G00108890 Rroxscaffold_2G00125570
rosa_rugosa Rorug05G0050100 Rorug05G0050200 Rorug05G0050300 Rorug05G0050500 Rorug05G0050600 Rorug05G0050700
rosa_samantha Rh5AG140700 Rh5AG141000 Rh5AG141300 Rh5AG390000 Rh5BG139700 Rh5BG139800 Rh5BG139900 Rh5BG140000 Rh5CG151000 Rh5CG151500 Rh5CG151600 Rh5DG140200 Rh5DG140400 Rh5DG140600 Rh7AG368100 Rh7AG381400 Rh7AG381700 Rh7CG386400 Rh7CG400900 Rh7CG401200 Rh7DG380400 Rh7DG380500
rosa_wichuraiana Rw5G012510 Rw5G012530 Rw5G012540 Rw7G031980 Rw7G031990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AccBSI CCGCTC 1 cut(s) 839
AccII CGCG 1 cut(s) 1299
AciI CCGC 5 cut(s) 144, 484, 837, 1777, 2032
AclWI GGATC 3 cut(s) 837, 898, 1624
AcsI RAATTY 2 cut(s) 890, 1144
AcuI CTGAAG 3 cut(s) 598, 1503, 1905
AfaI GTAC 6 cut(s) 298, 607, 957, 1103, 1125, 1213
AfeI AGCGCT 2 cut(s) 707, 1137
AfiI CCNNNNNNNGG 5 cut(s) 442, 770, 913, 959, 1783
AflIII ACRYGT 1 cut(s) 1120
AjiI CACGTC 1 cut(s) 1313
AjnI CCWGG 2 cut(s) 727, 825
AjuI GAANNNNNNNTTGG 2 cut(s) 875, 907
AluBI AGCT 9 cut(s) 91, 425, 568, 938, 981, 1271, 1753, 1877, 2006
AluI AGCT 9 cut(s) 91, 425, 568, 938, 981, 1271, 1753, 1877, 2006
Alw26I GTCTC 3 cut(s) 419, 1960, 1976
AlwI GGATC 3 cut(s) 837, 898, 1624
AlwNI CAGNNNCTG 1 cut(s) 1256
Ama87I CYCGRG 2 cut(s) 416, 1686
Aor51HI AGCGCT 2 cut(s) 707, 1137
AoxI GGCC 1 cut(s) 1020
ApeKI GCWGC 7 cut(s) 15, 141, 425, 703, 1256, 1616, 1769
ApoI RAATTY 2 cut(s) 890, 1144
Asp700I GAANNNNTTC 1 cut(s) 1914
AspLEI GCGC 4 cut(s) 20, 350, 708, 1138
AspS9I GGNCC 4 cut(s) 823, 950, 1406, 1695
AsuC2I CCSGG 1 cut(s) 887
AsuHPI GGTGA 2 cut(s) 755, 1445
AvaI CYCGRG 2 cut(s) 416, 1686
AvaII GGWCC 4 cut(s) 823, 950, 1406, 1695
AxyI CCTNAGG 1 cut(s) 769
BanII GRGCYC 1 cut(s) 66
BarI GAAGNNNNNNTAC 2 cut(s) 1204, 1236
BbsI GAAGAC 2 cut(s) 1212, 1713
BbvI GCAGC 7 cut(s) 2, 153, 412, 715, 1243, 1603, 1756
BccI CCATC 9 cut(s) 35, 53, 174, 187, 569, 905, 1781, 1822, 1826
BcgI CGANNNNNNTGC 2 cut(s) 407, 441
BciT130I CCWGG 2 cut(s) 729, 827
BciVI GTATCC 1 cut(s) 1921
BcnI CCSGG 1 cut(s) 887
BcoDI GTCTC 3 cut(s) 419, 1960, 1976
BfaI CTAG 1 cut(s) 1160
BfmI CTRYAG 1 cut(s) 1512
BfoI RGCGCY 3 cut(s) 351, 709, 1139
BfuI GTATCC 1 cut(s) 1921
BisI GCNGC 7 cut(s) 16, 142, 426, 704, 1257, 1617, 1770
BlpI GCTNAGC 1 cut(s) 977
BlsI GCNGC 7 cut(s) 17, 143, 427, 705, 1258, 1618, 1771
Bme1390I CCNGG 3 cut(s) 729, 827, 887
Bme18I GGWCC 4 cut(s) 823, 950, 1406, 1695
BmeT110I CYCGRG 2 cut(s) 416, 1686
BmgBI CACGTC 1 cut(s) 1313
BmgT120I GGNCC 4 cut(s) 823, 950, 1406, 1695
BmiI GGNNCC 4 cut(s) 215, 540, 952, 1917
BmrFI CCNGG 3 cut(s) 729, 827, 887
BmsI GCATC 7 cut(s) 187, 456, 1243, 1270, 1340, 1403, 1720
BpiI GAAGAC 2 cut(s) 1212, 1713
BpmI CTGGAG 2 cut(s) 557, 711
Bpu1102I GCTNAGC 1 cut(s) 977
BpuEI CTTGAG 2 cut(s) 1250, 1986
BpuMI CCSGG 1 cut(s) 887
BsaI GGTCTC 1 cut(s) 419
BsaJI CCNNGG 3 cut(s) 276, 1685, 2057
BsaXI ACNNNNNCTCC 2 cut(s) 659, 689
Bsc4I CCNNNNNNNGG 5 cut(s) 442, 770, 913, 959, 1783
Bse1I ACTGG 6 cut(s) 447, 651, 952, 1408, 1409, 2048
Bse21I CCTNAGG 1 cut(s) 769
Bse3DI GCAATG 2 cut(s) 435, 2079
BseBI CCWGG 2 cut(s) 729, 827
BseDI CCNNGG 3 cut(s) 276, 1685, 2057
BseGI GGATG 8 cut(s) 202, 328, 580, 1250, 1285, 1334, 1773, 1837
BseLI CCNNNNNNNGG 5 cut(s) 442, 770, 913, 959, 1783
BseMI GCAATG 2 cut(s) 435, 2079
BseMII CTCAG 5 cut(s) 87, 783, 991, 1229, 2000
BseNI ACTGG 6 cut(s) 447, 651, 952, 1408, 1409, 2048
BseRI GAGGAG 6 cut(s) 677, 680, 683, 698, 1799, 2043
BseXI GCAGC 7 cut(s) 2, 153, 412, 715, 1243, 1603, 1756
BsgI GTGCAG 3 cut(s) 771, 1269, 1967
Bsh1236I CGCG 1 cut(s) 1299
BshFI GGCC 1 cut(s) 1022
BsiHKCI CYCGRG 2 cut(s) 416, 1686
BsiSI CCGG 1 cut(s) 886
BslFI GGGAC 3 cut(s) 464, 936, 1131
BslI CCNNNNNNNGG 5 cut(s) 442, 770, 913, 959, 1783
BsmAI GTCTC 3 cut(s) 419, 1960, 1976
BsmFI GGGAC 3 cut(s) 464, 936, 1131
BsmI GAATGC 1 cut(s) 332
BsnI GGCC 1 cut(s) 1022
Bso31I GGTCTC 1 cut(s) 419
BsoBI CYCGRG 2 cut(s) 416, 1686
Bsp1286I GDGCHC 1 cut(s) 66
Bsp1407I TGTACA 1 cut(s) 1123
Bsp143I GATC 5 cut(s) 829, 876, 903, 1629, 1642
Bsp1720I GCTNAGC 1 cut(s) 977
Bsp19I CCATGG 1 cut(s) 276
Bsp68I TCGCGA 1 cut(s) 1299
BspACI CCGC 5 cut(s) 144, 484, 837, 1777, 2032
BspANI GGCC 1 cut(s) 1022
BspCNI CTCAG 5 cut(s) 88, 782, 990, 1228, 1999
BspFNI CGCG 1 cut(s) 1299
BspHI TCATGA 1 cut(s) 1635
BspLI GGNNCC 4 cut(s) 215, 540, 952, 1917
BspMAI CTGCAG 1 cut(s) 1516
BspPI GGATC 3 cut(s) 837, 898, 1624
BspTNI GGTCTC 1 cut(s) 419
BsrBI CCGCTC 1 cut(s) 839
BsrDI GCAATG 2 cut(s) 435, 2079
BsrGI TGTACA 1 cut(s) 1123
BsrI ACTGG 6 cut(s) 447, 651, 952, 1408, 1409, 2048
BssECI CCNNGG 3 cut(s) 276, 1685, 2057
BssMI GATC 5 cut(s) 829, 876, 903, 1629, 1642
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 2 cut(s) 729, 827
Bst6I CTCTTC 5 cut(s) 654, 867, 1206, 1605, 1905
BstAPI GCANNNNNTGC 1 cut(s) 1256
BstAUI TGTACA 1 cut(s) 1123
BstC8I GCNNGC 4 cut(s) 93, 304, 423, 738
BstDEI CTNAG 7 cut(s) 96, 180, 698, 769, 977, 1215, 1986
BstDSI CCRYGG 2 cut(s) 276, 2057
BstENI CCTNNNNNAGG 1 cut(s) 768
BstF5I GGATG 8 cut(s) 202, 328, 580, 1250, 1285, 1334, 1773, 1837
BstFNI CGCG 1 cut(s) 1299
BstH2I RGCGCY 3 cut(s) 351, 709, 1139
BstHHI GCGC 4 cut(s) 20, 350, 708, 1138
BstKTI GATC 5 cut(s) 832, 879, 906, 1632, 1645
BstMAI GTCTC 3 cut(s) 419, 1960, 1976
BstMBI GATC 5 cut(s) 829, 876, 903, 1629, 1642
BstMWI GCNNNNNNNGC 9 cut(s) 122, 150, 356, 1256, 1739, 2012, 2021, 2069, 2084
BstNI CCWGG 2 cut(s) 729, 827
BstNSI RCATGY 2 cut(s) 1124, 1331
BstSCI CCNGG 3 cut(s) 727, 825, 885
BstSFI CTRYAG 1 cut(s) 1512
BstUI CGCG 1 cut(s) 1299
BstV1I GCAGC 7 cut(s) 2, 153, 412, 715, 1243, 1603, 1756
BstV2I GAAGAC 2 cut(s) 1212, 1713
BstX2I RGATCY 1 cut(s) 829
BstXI CCANNNNNNTGG 2 cut(s) 283, 1780
BstYI RGATCY 1 cut(s) 829
Bsu36I CCTNAGG 1 cut(s) 769
BsuI GTATCC 1 cut(s) 1921
BsuRI GGCC 1 cut(s) 1022
BtgI CCRYGG 2 cut(s) 276, 2057
BtrI CACGTC 1 cut(s) 1313
BtsCI GGATG 8 cut(s) 202, 328, 580, 1250, 1285, 1334, 1773, 1837
BtsI GCAGTG 1 cut(s) 1955
BtsIMutI CAGTG 6 cut(s) 211, 440, 622, 945, 1678, 1955
BtuMI TCGCGA 1 cut(s) 1299
Cac8I GCNNGC 4 cut(s) 93, 304, 423, 738
CaiI CAGNNNCTG 1 cut(s) 1256
CciI TCATGA 1 cut(s) 1635
CfoI GCGC 4 cut(s) 20, 350, 708, 1138
Cfr13I GGNCC 4 cut(s) 823, 950, 1406, 1695
Csp6I GTAC 6 cut(s) 297, 606, 956, 1102, 1124, 1212
CviAII CATG 8 cut(s) 277, 908, 1015, 1121, 1225, 1328, 1636, 1765
CviQI GTAC 6 cut(s) 297, 606, 956, 1102, 1124, 1212
DdeI CTNAG 7 cut(s) 96, 180, 698, 769, 977, 1215, 1986
DpnI GATC 5 cut(s) 831, 878, 905, 1631, 1644
DpnII GATC 5 cut(s) 829, 876, 903, 1629, 1642
DraI TTTAAA 1 cut(s) 1150
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
Eam1104I CTCTTC 5 cut(s) 654, 867, 1206, 1605, 1905
EarI CTCTTC 5 cut(s) 654, 867, 1206, 1605, 1905
Eco130I CCWWGG 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 419
Eco47I GGWCC 4 cut(s) 823, 950, 1406, 1695
Eco47III AGCGCT 2 cut(s) 707, 1137
Eco57I CTGAAG 3 cut(s) 598, 1503, 1905
Eco81I CCTNAGG 1 cut(s) 769
Eco88I CYCGRG 2 cut(s) 416, 1686
EcoNI CCTNNNNNAGG 1 cut(s) 768
EcoO109I RGGNCCY 1 cut(s) 823
EcoRI GAATTC 1 cut(s) 890
EcoRII CCWGG 2 cut(s) 727, 825
EcoT14I CCWWGG 1 cut(s) 276
EcoT22I ATGCAT 1 cut(s) 1333
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 8 cut(s) 280, 911, 1018, 1124, 1228, 1331, 1639, 1768
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FaqI GGGAC 3 cut(s) 464, 936, 1131
FatI CATG 8 cut(s) 276, 907, 1014, 1120, 1224, 1327, 1635, 1764
FauI CCCGC 3 cut(s) 137, 491, 844
Fnu4HI GCNGC 7 cut(s) 16, 142, 426, 704, 1257, 1617, 1770
FokI GGATG 8 cut(s) 209, 335, 587, 1257, 1292, 1321, 1760, 1844
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 7 cut(s) 16, 142, 426, 704, 1257, 1617, 1770
FspBI CTAG 1 cut(s) 1160
GlaI GCGC 4 cut(s) 19, 349, 707, 1137
GluI GCNGC 7 cut(s) 16, 142, 426, 704, 1257, 1617, 1770
GsuI CTGGAG 2 cut(s) 557, 711
HaeII RGCGCY 3 cut(s) 351, 709, 1139
HaeIII GGCC 1 cut(s) 1022
HapII CCGG 1 cut(s) 886
HhaI GCGC 4 cut(s) 20, 350, 708, 1138
Hin1II CATG 8 cut(s) 280, 911, 1018, 1124, 1228, 1331, 1639, 1768
Hin6I GCGC 4 cut(s) 18, 348, 706, 1136
HinP1I GCGC 4 cut(s) 18, 348, 706, 1136
HincII GTYRAC 1 cut(s) 1372
HindII GTYRAC 1 cut(s) 1372
HindIII AAGCTT 3 cut(s) 89, 1751, 1875
HinfI GANTC 5 cut(s) 105, 401, 1070, 1427, 1984
HpaII CCGG 1 cut(s) 886
HphI GGTGA 2 cut(s) 755, 1445
Hpy166II GTNNAC 5 cut(s) 104, 943, 1093, 1104, 1372
Hpy188I TCNGA 8 cut(s) 138, 373, 406, 585, 1006, 1360, 1827, 1924
Hpy188III TCNNGA 9 cut(s) 337, 398, 416, 536, 771, 1287, 1298, 1475, 1636
Hpy8I GTNNAC 5 cut(s) 104, 943, 1093, 1104, 1372
Hpy99I CGWCG 1 cut(s) 1314
HpyAV CCTTC 7 cut(s) 204, 220, 447, 622, 1031, 1178, 1929
HpyCH4IV ACGT 3 cut(s) 494, 1312, 1499
HpyF10VI GCNNNNNNNGC 9 cut(s) 122, 150, 356, 1256, 1739, 2012, 2021, 2069, 2084
HpyF3I CTNAG 7 cut(s) 96, 180, 698, 769, 977, 1215, 1986
HpySE526I ACGT 3 cut(s) 494, 1312, 1499
Hsp92II CATG 8 cut(s) 280, 911, 1018, 1124, 1228, 1331, 1639, 1768
HspAI GCGC 4 cut(s) 18, 348, 706, 1136
Kzo9I GATC 5 cut(s) 829, 876, 903, 1629, 1642
LmnI GCTCC 3 cut(s) 538, 986, 2109
Lsp1109I GCAGC 7 cut(s) 2, 153, 412, 715, 1243, 1603, 1756
LweI GCATC 7 cut(s) 187, 456, 1243, 1270, 1340, 1403, 1720
MaeI CTAG 1 cut(s) 1160
MaeII ACGT 3 cut(s) 494, 1312, 1499
MaeIII GTNAC 6 cut(s) 495, 640, 1840, 1854, 1996, 2036
MalI GATC 5 cut(s) 831, 878, 905, 1631, 1644
MbiI CCGCTC 1 cut(s) 839
MboI GATC 5 cut(s) 829, 876, 903, 1629, 1642
MfeI CAATTG 1 cut(s) 1545
MflI RGATCY 1 cut(s) 829
MhlI GDGCHC 1 cut(s) 66
MlyI GAGTC 3 cut(s) 99, 1079, 1978
MmeI TCCRAC 2 cut(s) 1047, 1512
Mph1103I ATGCAT 1 cut(s) 1333
MroXI GAANNNNTTC 1 cut(s) 1914
MslI CAYNNNNRTG 2 cut(s) 158, 1109
MspA1I CMGCKG 1 cut(s) 144
MspI CCGG 1 cut(s) 886
MspR9I CCNGG 3 cut(s) 729, 827, 887
MunI CAATTG 1 cut(s) 1545
Mva1269I GAATGC 1 cut(s) 332
MvaI CCWGG 2 cut(s) 729, 827
MvnI CGCG 1 cut(s) 1299
MwoI GCNNNNNNNGC 9 cut(s) 122, 150, 356, 1256, 1739, 2012, 2021, 2069, 2084
NciI CCSGG 1 cut(s) 887
NcoI CCATGG 1 cut(s) 276
NdeII GATC 5 cut(s) 829, 876, 903, 1629, 1642
NlaIII CATG 8 cut(s) 280, 911, 1018, 1124, 1228, 1331, 1639, 1768
NlaIV GGNNCC 4 cut(s) 215, 540, 952, 1917
NmuCI GTSAC 2 cut(s) 1854, 1996
NruI TCGCGA 1 cut(s) 1299
NsiI ATGCAT 1 cut(s) 1333
NspI RCATGY 2 cut(s) 1124, 1331
PaeR7I CTCGAG 1 cut(s) 416
PagI TCATGA 1 cut(s) 1635
PciI ACATGT 1 cut(s) 1120
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PctI GAATGC 1 cut(s) 332
PdmI GAANNNNTTC 1 cut(s) 1914
PfeI GAWTC 2 cut(s) 401, 1427
PfoI TCCNGGA 1 cut(s) 727
PkrI GCNGC 7 cut(s) 17, 143, 427, 705, 1258, 1618, 1771
PleI GAGTC 3 cut(s) 99, 1078, 1978
PpsI GAGTC 3 cut(s) 99, 1078, 1978
PpuMI RGGWCCY 1 cut(s) 823
PscI ACATGT 1 cut(s) 1120
Psp5II RGGWCCY 1 cut(s) 823
Psp6I CCWGG 2 cut(s) 727, 825
PspGI CCWGG 2 cut(s) 727, 825
PspN4I GGNNCC 4 cut(s) 215, 540, 952, 1917
PspPI GGNCC 4 cut(s) 823, 950, 1406, 1695
PspPPI RGGWCCY 1 cut(s) 823
PstI CTGCAG 1 cut(s) 1516
PstNI CAGNNNCTG 1 cut(s) 1256
PsuI RGATCY 1 cut(s) 829
RruI TCGCGA 1 cut(s) 1299
RsaI GTAC 6 cut(s) 298, 607, 957, 1103, 1125, 1213
RsaNI GTAC 6 cut(s) 297, 606, 956, 1102, 1124, 1212
RseI CAYNNNNRTG 2 cut(s) 158, 1109
SatI GCNGC 7 cut(s) 16, 142, 426, 704, 1257, 1617, 1770
Sau3AI GATC 5 cut(s) 829, 876, 903, 1629, 1642
Sau96I GGNCC 4 cut(s) 823, 950, 1406, 1695
SchI GAGTC 3 cut(s) 99, 1079, 1978
ScrFI CCNGG 3 cut(s) 729, 827, 887
SduI GDGCHC 1 cut(s) 66
SfaNI GCATC 7 cut(s) 187, 456, 1243, 1270, 1340, 1403, 1720
SfcI CTRYAG 1 cut(s) 1512
Sfr274I CTCGAG 1 cut(s) 416
SinI GGWCC 4 cut(s) 823, 950, 1406, 1695
SlaI CTCGAG 1 cut(s) 416
SmiMI CAYNNNNRTG 2 cut(s) 158, 1109
SmlI CTYRAG 3 cut(s) 416, 1229, 2001
SmoI CTYRAG 3 cut(s) 416, 1229, 2001
SsiI CCGC 5 cut(s) 144, 484, 837, 1777, 2032
SspI AATATT 1 cut(s) 1801
SspMI CTAG 1 cut(s) 1160
StyD4I CCNGG 3 cut(s) 727, 825, 885
StyI CCWWGG 1 cut(s) 276
TaiI ACGT 3 cut(s) 497, 1315, 1502
TaqI TCGA 4 cut(s) 66, 336, 417, 865
TatI WGTACW 2 cut(s) 1123, 1211
TfiI GAWTC 2 cut(s) 401, 1427
TscAI CASTG 6 cut(s) 211, 447, 622, 952, 1678, 1955
TseFI GTSAC 2 cut(s) 1854, 1996
TseI GCWGC 7 cut(s) 15, 141, 425, 703, 1256, 1616, 1769
Tsp45I GTSAC 2 cut(s) 1854, 1996
TspDTI ATGAA 8 cut(s) 176, 446, 672, 1185, 1494, 1652, 1763, 1839
TspGWI ACGGA 3 cut(s) 1327, 1597, 2046
TspRI CASTG 6 cut(s) 211, 447, 622, 952, 1678, 1955
VpaK11BI GGWCC 4 cut(s) 823, 950, 1406, 1695
XagI CCTNNNNNAGG 1 cut(s) 768
XapI RAATTY 2 cut(s) 890, 1144
XceI RCATGY 2 cut(s) 1124, 1331
XhoI CTCGAG 1 cut(s) 416
XmnI GAANNNNTTC 1 cut(s) 1914
XspI CTAG 1 cut(s) 1160
Zsp2I ATGCAT 1 cut(s) 1333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.