Protein ROOT HAIR DEFECTIVE 3 homolog
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| URGCP_GTPase | PF25683 | 31 - 191 | 8.2e-10 | URGCP-like GTPase domain |
| RHD3_GTPase | PF05879 | 44 - 207 | 4.7e-67 | Root hair defective 3 GTP-binding protein (RHD3) GTPase domain |
| RHD3_GTPase | PF05879 | 208 - 303 | 5.1e-16 | Root hair defective 3 GTP-binding protein (RHD3) GTPase domain |
| Sey1_3HB | PF20428 | 346 - 448 | 3.4e-14 | Sey1 three-helix bundle domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1234 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1040 |
| AciI | CCGC | 1 cut(s) | 147 |
| AclI | AACGTT | 1 cut(s) | 933 |
| AclWI | GGATC | 2 cut(s) | 1433, 1446 |
| AcoI | YGGCCR | 1 cut(s) | 243 |
| AcsI | RAATTY | 3 cut(s) | 185, 719, 845 |
| AcuI | CTGAAG | 1 cut(s) | 575 |
| AfaI | GTAC | 6 cut(s) | 389, 523, 1032, 1181, 1288, 1337 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 619, 676, 841, 1040, 1239 |
| AflIII | ACRYGT | 1 cut(s) | 1012 |
| AgsI | TTSAA | 8 cut(s) | 52, 166, 1000, 1006, 1025, 1466, 1488, 1501 |
| AjiI | CACGTC | 1 cut(s) | 1013 |
| AjnI | CCWGG | 1 cut(s) | 835 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 625, 657 |
| AluBI | AGCT | 7 cut(s) | 91, 341, 538, 1051, 1056, 1507, 1547 |
| AluI | AGCT | 7 cut(s) | 91, 341, 538, 1051, 1056, 1507, 1547 |
| Alw21I | GWGCWC | 1 cut(s) | 158 |
| Alw26I | GTCTC | 1 cut(s) | 807 |
| AlwI | GGATC | 2 cut(s) | 1433, 1446 |
| AoxI | GGCC | 1 cut(s) | 243 |
| ApeKI | GCWGC | 7 cut(s) | 203, 206, 341, 416, 1048, 1301, 1504 |
| ApoI | RAATTY | 3 cut(s) | 185, 719, 845 |
| AspLEI | GCGC | 3 cut(s) | 102, 355, 978 |
| AspS9I | GGNCC | 3 cut(s) | 134, 832, 1096 |
| AsuII | TTCGAA | 3 cut(s) | 531, 587, 644 |
| AsuNHI | GCTAGC | 1 cut(s) | 355 |
| AvaII | GGWCC | 3 cut(s) | 134, 832, 1096 |
| BamHI | GGATCC | 1 cut(s) | 1438 |
| BbsI | GAAGAC | 1 cut(s) | 846 |
| Bbv12I | GWGCWC | 1 cut(s) | 158 |
| BbvI | GCAGC | 7 cut(s) | 215, 218, 328, 403, 1060, 1313, 1516 |
| BccI | CCATC | 7 cut(s) | 35, 177, 268, 293, 797, 1450, 1450 |
| BceAI | ACGGC | 1 cut(s) | 52 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1290, 1324 |
| BciT130I | CCWGG | 1 cut(s) | 837 |
| BciVI | GTATCC | 3 cut(s) | 313, 463, 673 |
| BclI | TGATCA | 1 cut(s) | 751 |
| BcoDI | GTCTC | 1 cut(s) | 807 |
| BfaI | CTAG | 2 cut(s) | 356, 965 |
| BfmI | CTRYAG | 2 cut(s) | 391, 1491 |
| BfoI | RGCGCY | 1 cut(s) | 103 |
| BfuAI | ACCTGC | 1 cut(s) | 1234 |
| BfuI | GTATCC | 3 cut(s) | 313, 463, 673 |
| BisI | GCNGC | 7 cut(s) | 204, 207, 342, 417, 1049, 1302, 1505 |
| BlpI | GCTNAGC | 2 cut(s) | 96, 1052 |
| BlsI | GCNGC | 7 cut(s) | 205, 208, 343, 418, 1050, 1303, 1506 |
| BmcAI | AGTACT | 2 cut(s) | 523, 1337 |
| Bme1390I | CCNGG | 1 cut(s) | 837 |
| Bme18I | GGWCC | 3 cut(s) | 134, 832, 1096 |
| BmgBI | CACGTC | 1 cut(s) | 1013 |
| BmgT120I | GGNCC | 3 cut(s) | 134, 832, 1096 |
| BmiI | GGNNCC | 4 cut(s) | 135, 834, 1404, 1440 |
| BmrFI | CCNGG | 1 cut(s) | 837 |
| BmrI | ACTGGG | 1 cut(s) | 589 |
| BmsI | GCATC | 1 cut(s) | 1362 |
| BmtI | GCTAGC | 1 cut(s) | 359 |
| BmuI | ACTGGG | 1 cut(s) | 589 |
| BoxI | GACNNNNGTC | 1 cut(s) | 402 |
| BpiI | GAAGAC | 1 cut(s) | 846 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 96, 1052 |
| Bpu14I | TTCGAA | 3 cut(s) | 531, 587, 644 |
| BpuEI | CTTGAG | 1 cut(s) | 899 |
| BsaAI | YACGTR | 2 cut(s) | 506, 1434 |
| BsaI | GGTCTC | 1 cut(s) | 807 |
| BsaJI | CCNNGG | 2 cut(s) | 817, 835 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 813, 843 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 619, 676, 841, 1040, 1239 |
| Bse1I | ACTGG | 1 cut(s) | 595 |
| BseBI | CCWGG | 1 cut(s) | 837 |
| BseDI | CCNNGG | 2 cut(s) | 817, 835 |
| BseGI | GGATG | 5 cut(s) | 21, 565, 1168, 1347, 1461 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 619, 676, 841, 1040, 1239 |
| BseMII | CTCAG | 4 cut(s) | 87, 152, 1066, 1524 |
| BseNI | ACTGG | 1 cut(s) | 595 |
| BseRI | GAGGAG | 2 cut(s) | 758, 1106 |
| BseXI | GCAGC | 7 cut(s) | 215, 218, 328, 403, 1060, 1313, 1516 |
| BseYI | CCCAGC | 2 cut(s) | 840, 1174 |
| BshFI | GGCC | 1 cut(s) | 245 |
| BsiHKAI | GWGCWC | 1 cut(s) | 158 |
| BslFI | GGGAC | 2 cut(s) | 147, 818 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 619, 676, 841, 1040, 1239 |
| BsmAI | GTCTC | 1 cut(s) | 807 |
| BsmFI | GGGAC | 2 cut(s) | 147, 818 |
| BsmI | GAATGC | 2 cut(s) | 205, 418 |
| BsnI | GGCC | 1 cut(s) | 245 |
| Bso31I | GGTCTC | 1 cut(s) | 807 |
| Bsp119I | TTCGAA | 3 cut(s) | 531, 587, 644 |
| Bsp1286I | GDGCHC | 1 cut(s) | 158 |
| Bsp143I | GATC | 5 cut(s) | 10, 751, 967, 1116, 1438 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 96, 1052 |
| BspACI | CCGC | 1 cut(s) | 147 |
| BspANI | GGCC | 1 cut(s) | 245 |
| BspCNI | CTCAG | 4 cut(s) | 88, 151, 1065, 1525 |
| BspLI | GGNNCC | 4 cut(s) | 135, 834, 1404, 1440 |
| BspMAI | CTGCAG | 1 cut(s) | 395 |
| BspMI | ACCTGC | 1 cut(s) | 1234 |
| BspOI | GCTAGC | 1 cut(s) | 359 |
| BspPI | GGATC | 2 cut(s) | 1433, 1446 |
| BspQI | GCTCTTC | 1 cut(s) | 146 |
| BspT104I | TTCGAA | 3 cut(s) | 531, 587, 644 |
| BspTNI | GGTCTC | 1 cut(s) | 807 |
| BsrI | ACTGG | 1 cut(s) | 595 |
| BssECI | CCNNGG | 2 cut(s) | 817, 835 |
| BssMI | GATC | 5 cut(s) | 10, 751, 967, 1116, 1438 |
| Bst2UI | CCWGG | 1 cut(s) | 837 |
| Bst4CI | ACNGT | 5 cut(s) | 17, 818, 829, 1495, 1520 |
| Bst6I | CTCTTC | 2 cut(s) | 146, 939 |
| BstBAI | YACGTR | 2 cut(s) | 506, 1434 |
| BstBI | TTCGAA | 3 cut(s) | 531, 587, 644 |
| BstC8I | GCNNGC | 5 cut(s) | 93, 243, 357, 798, 980 |
| BstDEI | CTNAG | 6 cut(s) | 96, 138, 1052, 1339, 1533, 1601 |
| BstDSI | CCRYGG | 1 cut(s) | 817 |
| BstF5I | GGATG | 5 cut(s) | 21, 565, 1168, 1347, 1461 |
| BstH2I | RGCGCY | 1 cut(s) | 103 |
| BstHHI | GCGC | 3 cut(s) | 102, 355, 978 |
| BstKTI | GATC | 5 cut(s) | 13, 754, 970, 1119, 1441 |
| BstMAI | GTCTC | 1 cut(s) | 807 |
| BstMBI | GATC | 5 cut(s) | 10, 751, 967, 1116, 1438 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 97, 153, 300, 350 |
| BstNI | CCWGG | 1 cut(s) | 837 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 402 |
| BstSCI | CCNGG | 1 cut(s) | 835 |
| BstSFI | CTRYAG | 2 cut(s) | 391, 1491 |
| BstV1I | GCAGC | 7 cut(s) | 215, 218, 328, 403, 1060, 1313, 1516 |
| BstV2I | GAAGAC | 1 cut(s) | 846 |
| BstX2I | RGATCY | 1 cut(s) | 1438 |
| BstYI | RGATCY | 1 cut(s) | 1438 |
| BsuI | GTATCC | 3 cut(s) | 313, 463, 673 |
| BsuRI | GGCC | 1 cut(s) | 245 |
| BtgI | CCRYGG | 1 cut(s) | 817 |
| BtgZI | GCGATG | 1 cut(s) | 54 |
| BtrI | CACGTC | 1 cut(s) | 1013 |
| BtsCI | GGATG | 5 cut(s) | 21, 565, 1168, 1347, 1461 |
| BtsI | GCAGTG | 1 cut(s) | 400 |
| BtsIMutI | CAGTG | 3 cut(s) | 22, 400, 1500 |
| BveI | ACCTGC | 1 cut(s) | 1234 |
| Cac8I | GCNNGC | 5 cut(s) | 93, 243, 357, 798, 980 |
| CfoI | GCGC | 3 cut(s) | 102, 355, 978 |
| Cfr13I | GGNCC | 3 cut(s) | 134, 832, 1096 |
| Csp6I | GTAC | 6 cut(s) | 388, 522, 1031, 1180, 1287, 1336 |
| CviAII | CATG | 4 cut(s) | 280, 454, 1189, 1513 |
| CviQI | GTAC | 6 cut(s) | 388, 522, 1031, 1180, 1287, 1336 |
| DdeI | CTNAG | 6 cut(s) | 96, 138, 1052, 1339, 1533, 1601 |
| DpnI | GATC | 5 cut(s) | 12, 753, 969, 1118, 1440 |
| DpnII | GATC | 5 cut(s) | 10, 751, 967, 1116, 1438 |
| EaeI | YGGCCR | 1 cut(s) | 243 |
| Eam1104I | CTCTTC | 2 cut(s) | 146, 939 |
| EarI | CTCTTC | 2 cut(s) | 146, 939 |
| Eco31I | GGTCTC | 1 cut(s) | 807 |
| Eco47I | GGWCC | 3 cut(s) | 134, 832, 1096 |
| Eco57I | CTGAAG | 1 cut(s) | 575 |
| EcoO109I | RGGNCCY | 1 cut(s) | 134 |
| EcoRII | CCWGG | 1 cut(s) | 835 |
| EcoT22I | ATGCAT | 1 cut(s) | 1377 |
| FaeI | CATG | 4 cut(s) | 283, 457, 1192, 1516 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 75, 107, 780, 812 |
| FaqI | GGGAC | 2 cut(s) | 147, 818 |
| FatI | CATG | 4 cut(s) | 279, 453, 1188, 1512 |
| FauI | CCCGC | 1 cut(s) | 140 |
| FbaI | TGATCA | 1 cut(s) | 751 |
| Fnu4HI | GCNGC | 7 cut(s) | 204, 207, 342, 417, 1049, 1302, 1505 |
| FokI | GGATG | 5 cut(s) | 8, 572, 1175, 1334, 1468 |
| Fsp4HI | GCNGC | 7 cut(s) | 204, 207, 342, 417, 1049, 1302, 1505 |
| FspBI | CTAG | 2 cut(s) | 356, 965 |
| GlaI | GCGC | 3 cut(s) | 101, 354, 977 |
| GluI | GCNGC | 7 cut(s) | 204, 207, 342, 417, 1049, 1302, 1505 |
| GsaI | CCCAGC | 2 cut(s) | 844, 1178 |
| HaeII | RGCGCY | 1 cut(s) | 103 |
| HaeIII | GGCC | 1 cut(s) | 245 |
| HhaI | GCGC | 3 cut(s) | 102, 355, 978 |
| Hin1II | CATG | 4 cut(s) | 283, 457, 1192, 1516 |
| Hin6I | GCGC | 3 cut(s) | 100, 353, 976 |
| HinP1I | GCGC | 3 cut(s) | 100, 353, 976 |
| HincII | GTYRAC | 2 cut(s) | 256, 1249 |
| HindII | GTYRAC | 2 cut(s) | 256, 1249 |
| HindIII | AAGCTT | 1 cut(s) | 89 |
| HinfI | GANTC | 7 cut(s) | 105, 615, 672, 901, 985, 1277, 1418 |
| HpaI | GTTAAC | 1 cut(s) | 1249 |
| Hpy166II | GTNNAC | 4 cut(s) | 256, 565, 1171, 1249 |
| Hpy188I | TCNGA | 7 cut(s) | 141, 367, 483, 726, 1081, 1312, 1455 |
| Hpy188III | TCNNGA | 6 cut(s) | 65, 271, 317, 407, 740, 1415 |
| Hpy8I | GTNNAC | 4 cut(s) | 256, 565, 1171, 1249 |
| Hpy99I | CGWCG | 4 cut(s) | 480, 483, 490, 1209 |
| HpyAV | CCTTC | 4 cut(s) | 73, 550, 632, 782 |
| HpyCH4III | ACNGT | 5 cut(s) | 17, 818, 829, 1495, 1520 |
| HpyCH4IV | ACGT | 6 cut(s) | 488, 505, 933, 1012, 1132, 1433 |
| HpyCH4V | TGCA | 7 cut(s) | 203, 326, 393, 419, 460, 800, 1375 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 97, 153, 300, 350 |
| HpyF3I | CTNAG | 6 cut(s) | 96, 138, 1052, 1339, 1533, 1601 |
| HpySE526I | ACGT | 6 cut(s) | 488, 505, 933, 1012, 1132, 1433 |
| Hsp92II | CATG | 4 cut(s) | 283, 457, 1192, 1516 |
| HspAI | GCGC | 3 cut(s) | 100, 353, 976 |
| Ksp22I | TGATCA | 1 cut(s) | 751 |
| KspAI | GTTAAC | 1 cut(s) | 1249 |
| Kzo9I | GATC | 5 cut(s) | 10, 751, 967, 1116, 1438 |
| LguI | GCTCTTC | 1 cut(s) | 146 |
| Lsp1109I | GCAGC | 7 cut(s) | 215, 218, 328, 403, 1060, 1313, 1516 |
| LweI | GCATC | 1 cut(s) | 1362 |
| MaeI | CTAG | 2 cut(s) | 356, 965 |
| MaeII | ACGT | 6 cut(s) | 488, 505, 933, 1012, 1132, 1433 |
| MaeIII | GTNAC | 1 cut(s) | 395 |
| MalI | GATC | 5 cut(s) | 12, 753, 969, 1118, 1440 |
| MboI | GATC | 5 cut(s) | 10, 751, 967, 1116, 1438 |
| MboII | GAAGA | 6 cut(s) | 163, 225, 846, 849, 896, 956 |
| MflI | RGATCY | 1 cut(s) | 1438 |
| MhlI | GDGCHC | 1 cut(s) | 158 |
| MluCI | AATT | 8 cut(s) | 185, 360, 719, 775, 845, 1020, 1059, 1268 |
| MlyI | GAGTC | 2 cut(s) | 1271, 1427 |
| MmeI | TCCRAC | 4 cut(s) | 49, 461, 954, 1198 |
| Mph1103I | ATGCAT | 1 cut(s) | 1377 |
| MseI | TTAA | 3 cut(s) | 261, 491, 1248 |
| MslI | CAYNNNNRTG | 2 cut(s) | 374, 1454 |
| MspA1I | CMGCKG | 1 cut(s) | 1507 |
| MspR9I | CCNGG | 1 cut(s) | 837 |
| Mva1269I | GAATGC | 2 cut(s) | 205, 418 |
| MvaI | CCWGG | 1 cut(s) | 837 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 97, 153, 300, 350 |
| NdeII | GATC | 5 cut(s) | 10, 751, 967, 1116, 1438 |
| NheI | GCTAGC | 1 cut(s) | 355 |
| NlaIII | CATG | 4 cut(s) | 283, 457, 1192, 1516 |
| NlaIV | GGNNCC | 4 cut(s) | 135, 834, 1404, 1440 |
| NmeAIII | GCCGAG | 1 cut(s) | 271 |
| NmuCI | GTSAC | 1 cut(s) | 395 |
| NsiI | ATGCAT | 1 cut(s) | 1377 |
| NspV | TTCGAA | 3 cut(s) | 531, 587, 644 |
| PciSI | GCTCTTC | 1 cut(s) | 146 |
| PctI | GAATGC | 2 cut(s) | 205, 418 |
| PfeI | GAWTC | 5 cut(s) | 105, 615, 672, 901, 985 |
| PflFI | GACNNNGTC | 1 cut(s) | 1590 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1040 |
| PkrI | GCNGC | 7 cut(s) | 205, 208, 343, 418, 1050, 1303, 1506 |
| PleI | GAGTC | 2 cut(s) | 1271, 1426 |
| PpsI | GAGTC | 2 cut(s) | 1271, 1426 |
| Ppu21I | YACGTR | 2 cut(s) | 506, 1434 |
| PpuMI | RGGWCCY | 1 cut(s) | 134 |
| PshAI | GACNNNNGTC | 1 cut(s) | 402 |
| Psp1406I | AACGTT | 1 cut(s) | 933 |
| Psp5II | RGGWCCY | 1 cut(s) | 134 |
| Psp6I | CCWGG | 1 cut(s) | 835 |
| PspFI | CCCAGC | 2 cut(s) | 840, 1174 |
| PspGI | CCWGG | 1 cut(s) | 835 |
| PspN4I | GGNNCC | 4 cut(s) | 135, 834, 1404, 1440 |
| PspPI | GGNCC | 3 cut(s) | 134, 832, 1096 |
| PspPPI | RGGWCCY | 1 cut(s) | 134 |
| PstI | CTGCAG | 1 cut(s) | 395 |
| PsuI | RGATCY | 1 cut(s) | 1438 |
| PsyI | GACNNNGTC | 1 cut(s) | 1590 |
| PvuII | CAGCTG | 1 cut(s) | 1507 |
| RsaI | GTAC | 6 cut(s) | 389, 523, 1032, 1181, 1288, 1337 |
| RsaNI | GTAC | 6 cut(s) | 388, 522, 1031, 1180, 1287, 1336 |
| RseI | CAYNNNNRTG | 2 cut(s) | 374, 1454 |
| SapI | GCTCTTC | 1 cut(s) | 146 |
| SaqAI | TTAA | 3 cut(s) | 261, 491, 1248 |
| SatI | GCNGC | 7 cut(s) | 204, 207, 342, 417, 1049, 1302, 1505 |
| Sau3AI | GATC | 5 cut(s) | 10, 751, 967, 1116, 1438 |
| Sau96I | GGNCC | 3 cut(s) | 134, 832, 1096 |
| ScaI | AGTACT | 2 cut(s) | 523, 1337 |
| SchI | GAGTC | 2 cut(s) | 1271, 1427 |
| ScrFI | CCNGG | 1 cut(s) | 837 |
| SduI | GDGCHC | 1 cut(s) | 158 |
| SfaNI | GCATC | 1 cut(s) | 1362 |
| SfcI | CTRYAG | 2 cut(s) | 391, 1491 |
| SfuI | TTCGAA | 3 cut(s) | 531, 587, 644 |
| SinI | GGWCC | 3 cut(s) | 134, 832, 1096 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 374, 1454 |
| SmlI | CTYRAG | 1 cut(s) | 914 |
| SmoI | CTYRAG | 1 cut(s) | 914 |
| Sse9I | AATT | 8 cut(s) | 185, 360, 719, 775, 845, 1020, 1059, 1268 |
| SsiI | CCGC | 1 cut(s) | 147 |
| SspI | AATATT | 1 cut(s) | 1103 |
| SspMI | CTAG | 2 cut(s) | 356, 965 |
| StyD4I | CCNGG | 1 cut(s) | 835 |
| TaaI | ACNGT | 5 cut(s) | 17, 818, 829, 1495, 1520 |
| TaiI | ACGT | 6 cut(s) | 491, 508, 936, 1015, 1135, 1436 |
| TaqI | TCGA | 8 cut(s) | 406, 531, 587, 618, 644, 675, 1017, 1194 |
| TasI | AATT | 8 cut(s) | 185, 360, 719, 775, 845, 1020, 1059, 1268 |
| TatI | WGTACW | 3 cut(s) | 387, 521, 1335 |
| TfiI | GAWTC | 5 cut(s) | 105, 615, 672, 901, 985 |
| Tru1I | TTAA | 3 cut(s) | 261, 491, 1248 |
| Tru9I | TTAA | 3 cut(s) | 261, 491, 1248 |
| TscAI | CASTG | 3 cut(s) | 22, 400, 1500 |
| TseFI | GTSAC | 1 cut(s) | 395 |
| TseI | GCWGC | 7 cut(s) | 203, 206, 341, 416, 1048, 1301, 1504 |
| Tsp45I | GTSAC | 1 cut(s) | 395 |
| TspDTI | ATGAA | 3 cut(s) | 212, 1281, 1501 |
| TspGWI | ACGGA | 2 cut(s) | 516, 1193 |
| TspRI | CASTG | 3 cut(s) | 22, 400, 1500 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1590 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1040 |
| VpaK11BI | GGWCC | 3 cut(s) | 134, 832, 1096 |
| XapI | RAATTY | 3 cut(s) | 185, 719, 845 |
| XspI | CTAG | 2 cut(s) | 356, 965 |
| ZrmI | AGTACT | 2 cut(s) | 523, 1337 |
| Zsp2I | ATGCAT | 1 cut(s) | 1377 |