Prupe.4G113800_v2.0.a1

Protein ROOT HAIR DEFECTIVE 3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000525
Physical Location & Seq
Reverse (-)
6054367 .. 6062096
7730 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G113800.1

Sequence Viewer

Length: 2523 bp
ATGGAGGAAGATTGCTGCGCCACACAACTCATCTATGGAGATGGTGAGTTTAACTCTTCTGGGCTCGACAGGTTCGTCAAGGAAGTGAAGCTTGCTGAGTGTGGACTCTCCTATGCTGTTGTTGCCATCATGGGTCCTCAGAGCAGCGGGAAGAGCACTTTATTGAACCATCTGTTCCACACTAAGTTTAGAGAGATGGATGCATACAGTGGAAGGAGCCAAACAACTAAGGGTATTTGGATAGCCAAGTGTGTTGGCATTGAGCCTTGCACGATTGCCATGGATTTGGAGGGTACCGATGGTAGGGAGAGAGGCGAGGATGATACTACATTCGAGAAGCAAAGCGCCCTATTTGCCCTGGCAGTTTCAGACATTGTGCTGATAAATATGTGGTGTCATGATATAGGTCGCGAGCAAGCTGCAAACAAACCTTTACTGAAAACAGTTTTTCAGGTCATGATGCGCTTATTCAGCCCCCGTAAAACGACATTACTGTTTGTTATACGTGATAAAACAAAGACCCCGTTTGAATATCTGGAGCCGGTTTTGAGGGAAGATATACAGAAGATATGGGATGGAGTTCCGAAGCCCCAAGCCCATAAAAGTACCCCCTTCAGTGATTTCTTTAGTGTAGAAGTAGTTGCTTTGTCCAGTTATGAAGAGAAGGAGGAGAAGTTTAAGGAGGAGGTTGCTCAACTGAGGCAGCGCTTTTTCCATTCTATTTCTCCAGGAGGGCTTGCTGGTGATAGACGGGGTGTTGTCCCTGCCACAGGATTTTCCTTTAGTGCACAACAGATTTGGAAAGTAATCAAAGAGAACAAGGACCTGGATCTTCCCGCTCACAAGGTTATGGTTGCTACTGTTCGGTGTGAAGAGATTGCCAACCAGAAATCTAATCAGTTAGTCTATGATGAGGATTGGTTGGCATTGAAAGAAGCTGTCCAAATTGGTCCCGTACAAGGTTTTGGTATAAGGCTCAGCTCCATCCTAGGCACCTATCTTTCTGAATATGACATGGAGGCCGTCTACTTTGATGAAGGTGTAAGGAACTCAAAACGACAATTGTTGGAGTCAAAAGCATTGGATTTTGTTTACCCTGCATACACGACCATGCTGGGACACCTGCGTTCTAAAGCACTTGAAGATTTTAAAGTGAGGCTGGAGCAATCGTTAAACAAAGGAGGAGAATTTGCTTCATCTGTTCGTACCTCTAGTCAGTCTTCCATGCTTGAGTTTGACAAAGGATGTGCAGATACTGCCATACAACAAGCTGATTGGGATGGTTCGAGAGTCAGGGAAAAACTTAAACGTGATATAGATGCTCATGCATCATCCGTTCGTAGTGCAAAGTTGTCAAAACTGAAAATCAATTATGAGAAACAACTTTCTGCATCTTTAACTGGACCTGTAGAGGCACTACTTGAAACTGGTGGAAAAGACACTTGGACTTCAATGAGAAAACTTCTTAATCATGACACTGAAGTTGCAGTATTGGAGTTCTCAGCTGCAGTTGCTGGTTTTGAGTTGGACAAAGATACATCTACCAAAATGACTCAAAATTTAAGGGATTATGCAAGAAATGTGGTTGAGAAAAAAGCACGAGAAGAGGCTGGAAACATTATGATCCACATGAAGGATCGGTTCTCGACAGTCTTCAATTATGACAGTGATTCAATGCCTAGGGTTTGGACTGAGAAAGAAGACATTAGAAGTATTACCAAGGATGCCCGCTCCGCGTCTCTAAAGCTTTTGTCGGTCATGGCTGCCATCCGCATGGAGTCGAAGCCAGATAATATTGAAAAACTTCTCTTTTCTTCTTTGATGGATGGAACTGTTACTGTTTCATCTTCGCAAGATAGGAGAGTAGCAGCTTCTACGTATCCTCTTGCCTCAAGCACTTGGGAAGAGGTTTCATCAAAGGATACTTTAATTACTCCAGTACAGTGCAAGTCGTTGTGGAGACAGTTCAAGGCAGAGACTGAGTATAGTGTCACTCAAGCTATTTCAGCCCAGGAGGCTCACAAGCAGAGTAACAACTGGTGGCCTCCTCTATGGGCTATTTTGGCGATGATTGTTCTTGGTTATAACGAAATTAAACTCCTTATAACGAACCCTCTCTACCTCATGGTTCTATTTGTTGCATATTTAATTTCAAGGGCCTTATGGGTACAGATGGACATTGGGCGAGTGTTCCAACATGGCATCCTGTCAGGAATACTAACTATCGTATCGAGGTTTCTTCCAACTGTTATGGATCTTCTAAGAAAACTTGCAGAAAAATCTCAGGGTAATCCAGCACCTGAAGCACCCAGGCGGCCAATTTCTGTTGCTTCCCAGAGTCATAGAAATGAAACCCCTCTGCCAAACACAATATCAAGCTCAATTCCTGAGTCAACTGTGTCATCTAATATGTCGTCATCGGATGGTGGCGTCGAATACTCAAGCCCTCCCTTGAGACAAAGGCGACCTACAAACGTTCAAGAAGTTGATGTAAATGTGTTTGTACCGTGTGTATCAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RHD3

Protein Analysis

841

Amino Acids

94.17

Weight (kDa)

6.12

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45160
fragaria_vesca FvH4_3g11890
malus_domestica MD00G1023300.v1.1 MD00G1023500.v1.1 MD00G1046300.v1.1 MD00G1046400.v1.1 MD00G1047200.v1.1 MD05G1180600.v1.1 MD05G1256900.v1.1 MD05G1257200.v1.1 MD05G1257300.v1.1 MD05G1257400.v1.1 MD05G1257900.v1.1 MD05G1258000.v1.1 MD10G1213100.v1.1 MD10G1237400.v1.1
prunus_persica Prupe.4G106400_v2.0.a1 Prupe.4G106400_v2.0.a1 Prupe.4G106900_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.I001700_v2.0.a1
pyrus_communis pycom05g23620 pycom05g23630 pycom05g23880 pycom05g24090 pycom05g24270 pycom10g19870
rosa_chinensis RchiOBHm_Chr5g0019311 RchiOBHm_Chr5g0019391 RchiOBHm_Chr5g0019401 RchiOBHm_Chr7g0226131 RchiOBHm_Chr7g0226141 RchiOBHm_Chr7g0226161
rosa_laevigata RLG00000001766 RLG00000001767 RLG00000032437 RLG00000032441 RLG00000032445
rosa_multiflora Rmu_sc0001350.1_g000022 Rmu_sc0001350.1_g000031 Rmu_sc0002141.1_g000028 Rmu_sc0002759.1_g000037 Rmu_sc0002759.1_g000039 Rmu_sc0005292.1_g000004 Rmu_sc0005292.1_g000050
rosa_roxburghii Rroxscaffold_1G00058650 Rroxscaffold_1G00058670 Rroxscaffold_1G00074270 Rroxscaffold_2G00108890 Rroxscaffold_2G00125570
rosa_rugosa Rorug05G0050100 Rorug05G0050200 Rorug05G0050300 Rorug05G0050500 Rorug05G0050600 Rorug05G0050700
rosa_samantha Rh5AG140700 Rh5AG141000 Rh5AG141300 Rh5AG390000 Rh5BG139700 Rh5BG139800 Rh5BG139900 Rh5BG140000 Rh5CG151000 Rh5CG151500 Rh5CG151600 Rh5DG140200 Rh5DG140400 Rh5DG140600 Rh7AG368100 Rh7AG381400 Rh7AG381700 Rh7CG386400 Rh7CG400900 Rh7CG401200 Rh7DG380400 Rh7DG380500
rosa_wichuraiana Rw5G012510 Rw5G012530 Rw5G012540 Rw7G031980 Rw7G031990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2085, 2105
AarI CACCTGC 1 cut(s) 1131
AasI GACNNNNNNGTC 1 cut(s) 74
Acc36I ACCTGC 1 cut(s) 1131
Acc65I GGTACC 1 cut(s) 293
AccB1I GGYRCC 2 cut(s) 293, 992
AccBSI CCGCTC 2 cut(s) 839, 1731
AccI GTMKAC 1 cut(s) 1026
AccII CGCG 2 cut(s) 411, 1736
AciI CCGC 6 cut(s) 147, 837, 1729, 1734, 1771, 2314
AclI AACGTT 1 cut(s) 2475
AclWI GGATC 4 cut(s) 837, 1618, 1644, 2262
AcoI YGGCCR 1 cut(s) 2315
AcsI RAATTY 2 cut(s) 1187, 1558
AcuI CTGAAG 3 cut(s) 598, 1500, 2322
AcyI GRCGYC 1 cut(s) 2430
AfaI GTAC 7 cut(s) 295, 607, 957, 1207, 1941, 2169, 2505
AfeI AGCGCT 1 cut(s) 707
AfiI CCNNNNNNNGG 4 cut(s) 303, 770, 959, 1633
AjnI CCWGG 5 cut(s) 357, 727, 825, 2010, 2309
AjuI GAANNNNNNNTTGG 2 cut(s) 1426, 1458
Alw21I GWGCWC 2 cut(s) 158, 790
Alw26I GTCTC 4 cut(s) 1743, 1954, 1970, 2449
Alw44I GTGCAC 1 cut(s) 786
AlwI GGATC 4 cut(s) 837, 1618, 1644, 2262
AlwNI CAGNNNCTG 4 cut(s) 1256, 1514, 1979, 2300
Aor51HI AGCGCT 1 cut(s) 707
AoxI GGCC 4 cut(s) 1020, 2042, 2157, 2315
ApaLI GTGCAC 1 cut(s) 786
ApeKI GCWGC 7 cut(s) 15, 144, 419, 703, 1505, 1763, 1868
ApoI RAATTY 2 cut(s) 1187, 1558
Asp700I GAANNNNTTC 1 cut(s) 1803
Asp718I GGTACC 1 cut(s) 293
AspA2I CCTAGG 2 cut(s) 988, 1679
AspLEI GCGC 4 cut(s) 20, 347, 465, 708
AspS9I GGNCC 5 cut(s) 134, 823, 950, 1403, 2157
AsuHPI GGTGA 2 cut(s) 56, 755
AvaII GGWCC 4 cut(s) 134, 823, 950, 1403
AvrII CCTAGG 2 cut(s) 988, 1679
BaeGI GKGCMC 1 cut(s) 790
BaeI ACNNNNGTAYC 2 cut(s) 2211, 2244
BanI GGYRCC 2 cut(s) 293, 992
BanII GRGCYC 1 cut(s) 66
BauI CACGAG 1 cut(s) 1599
BbsI GAAGAC 3 cut(s) 1212, 1645, 1707
Bbv12I GWGCWC 2 cut(s) 158, 790
BbvI GCAGC 7 cut(s) 2, 156, 406, 715, 1492, 1750, 1880
BceAI ACGGC 1 cut(s) 1007
BcgI CGANNNNNNTGC 2 cut(s) 401, 435
BciT130I CCWGG 5 cut(s) 359, 729, 827, 2012, 2311
BciVI GTATCC 2 cut(s) 1890, 1915
BcoDI GTCTC 4 cut(s) 1743, 1954, 1970, 2449
BfaI CTAG 3 cut(s) 989, 1212, 1680
BfmI CTRYAG 2 cut(s) 1407, 1506
BfoI RGCGCY 2 cut(s) 348, 709
BfuAI ACCTGC 1 cut(s) 1131
BfuI GTATCC 2 cut(s) 1890, 1915
BglI GCCNNNNNGGC 1 cut(s) 2015
BisI GCNGC 8 cut(s) 16, 145, 420, 704, 1506, 1764, 1869, 2315
BlnI CCTAGG 2 cut(s) 988, 1679
BlpI GCTNAGC 1 cut(s) 977
BlsI GCNGC 8 cut(s) 17, 146, 421, 705, 1507, 1765, 1870, 2316
Bme1390I CCNGG 5 cut(s) 359, 729, 827, 2012, 2311
Bme18I GGWCC 4 cut(s) 134, 823, 950, 1403
BmgT120I GGNCC 5 cut(s) 134, 823, 950, 1403, 2157
BmiI GGNNCC 6 cut(s) 135, 218, 295, 540, 952, 994
BmrFI CCNGG 5 cut(s) 359, 729, 827, 2012, 2311
BmsI GCATC 7 cut(s) 190, 450, 1309, 1337, 1400, 1714, 2211
BpiI GAAGAC 3 cut(s) 1212, 1645, 1707
BplI GAGNNNNNCTC 2 cut(s) 38, 70
BpmI CTGGAG 4 cut(s) 557, 711, 1181, 1920
Bpu1102I GCTNAGC 1 cut(s) 977
BpuEI CTTGAG 5 cut(s) 1250, 1876, 1980, 2425, 2473
BsaAI YACGTR 2 cut(s) 506, 1878
BsaHI GRCGYC 1 cut(s) 2430
BsaJI CCNNGG 7 cut(s) 279, 357, 988, 1679, 1719, 2010, 2309
BsaXI ACNNNNNCTCC 4 cut(s) 659, 689, 1154, 1184
Bsc4I CCNNNNNNNGG 4 cut(s) 303, 770, 959, 1633
Bse118I RCCGGY 1 cut(s) 541
Bse1I ACTGG 5 cut(s) 651, 1405, 1432, 1937, 2042
BseBI CCWGG 5 cut(s) 359, 729, 827, 2012, 2311
BseDI CCNNGG 7 cut(s) 279, 357, 988, 1679, 1719, 2010, 2309
BseLI CCNNNNNNNGG 4 cut(s) 303, 770, 959, 1633
BseMII CTCAG 9 cut(s) 87, 152, 689, 991, 1515, 1683, 1971, 2297, 2379
BseNI ACTGG 5 cut(s) 651, 1405, 1432, 1937, 2042
BseRI GAGGAG 4 cut(s) 683, 698, 1197, 2037
BseSI GKGCMC 1 cut(s) 790
BseXI GCAGC 7 cut(s) 2, 156, 406, 715, 1492, 1750, 1880
BseYI CCCAGC 1 cut(s) 1114
BsgI GTGCAG 1 cut(s) 1269
Bsh1236I CGCG 2 cut(s) 411, 1736
BshFI GGCC 4 cut(s) 1022, 2044, 2159, 2317
BshNI GGYRCC 2 cut(s) 293, 992
BsiHKAI GWGCWC 2 cut(s) 158, 790
BsiSI CCGG 1 cut(s) 542
BslFI GGGAC 3 cut(s) 746, 936, 1131
BslI CCNNNNNNNGG 4 cut(s) 303, 770, 959, 1633
BsmAI GTCTC 4 cut(s) 1743, 1954, 1970, 2449
BsmBI CGTCTC 1 cut(s) 1743
BsmFI GGGAC 3 cut(s) 746, 936, 1131
BsnI GGCC 4 cut(s) 1022, 2044, 2159, 2317
Bsp1286I GDGCHC 3 cut(s) 66, 158, 790
Bsp143I GATC 4 cut(s) 829, 1623, 1636, 2254
Bsp1720I GCTNAGC 1 cut(s) 977
Bsp19I CCATGG 1 cut(s) 279
Bsp68I TCGCGA 1 cut(s) 411
BspACI CCGC 6 cut(s) 147, 837, 1729, 1734, 1771, 2314
BspANI GGCC 4 cut(s) 1022, 2044, 2159, 2317
BspCNI CTCAG 9 cut(s) 88, 151, 690, 990, 1514, 1684, 1972, 2296, 2380
BspFNI CGCG 2 cut(s) 411, 1736
BspHI TCATGA 3 cut(s) 397, 456, 1471
BspLI GGNNCC 6 cut(s) 135, 218, 295, 540, 952, 994
BspMAI CTGCAG 1 cut(s) 1510
BspMI ACCTGC 1 cut(s) 1131
BspPI GGATC 4 cut(s) 837, 1618, 1644, 2262
BspQI GCTCTTC 1 cut(s) 146
BspT107I GGYRCC 2 cut(s) 293, 992
BsrBI CCGCTC 2 cut(s) 839, 1731
BsrFI RCCGGY 1 cut(s) 541
BsrI ACTGG 5 cut(s) 651, 1405, 1432, 1937, 2042
BssAI RCCGGY 1 cut(s) 541
BssECI CCNNGG 7 cut(s) 279, 357, 988, 1679, 1719, 2010, 2309
BssMI GATC 4 cut(s) 829, 1623, 1636, 2254
BssNI GRCGYC 1 cut(s) 2430
BssSI CACGAG 1 cut(s) 1599
BssT1I CCWWGG 4 cut(s) 279, 988, 1679, 1719
Bst2BI CACGAG 1 cut(s) 1599
Bst2UI CCWGG 5 cut(s) 359, 729, 827, 2012, 2311
Bst6I CTCTTC 6 cut(s) 61, 146, 654, 867, 1599, 1899
BstACI GRCGYC 1 cut(s) 2430
BstAPI GCANNNNNTGC 1 cut(s) 1256
BstBAI YACGTR 2 cut(s) 506, 1878
BstC8I GCNNGC 5 cut(s) 93, 413, 417, 738, 1729
BstDSI CCRYGG 1 cut(s) 279
BstENI CCTNNNNNAGG 1 cut(s) 768
BstFNI CGCG 2 cut(s) 411, 1736
BstH2I RGCGCY 2 cut(s) 348, 709
BstHHI GCGC 4 cut(s) 20, 347, 465, 708
BstKTI GATC 4 cut(s) 832, 1626, 1639, 2257
BstMAI GTCTC 4 cut(s) 1743, 1954, 1970, 2449
BstMBI GATC 4 cut(s) 829, 1623, 1636, 2254
BstNI CCWGG 5 cut(s) 359, 729, 827, 2012, 2311
BstSCI CCNGG 5 cut(s) 357, 727, 825, 2010, 2309
BstSFI CTRYAG 2 cut(s) 1407, 1506
BstSLI GKGCMC 1 cut(s) 790
BstSNI TACGTA 1 cut(s) 1878
BstUI CGCG 2 cut(s) 411, 1736
BstV1I GCAGC 7 cut(s) 2, 156, 406, 715, 1492, 1750, 1880
BstV2I GAAGAC 3 cut(s) 1212, 1645, 1707
BstX2I RGATCY 2 cut(s) 829, 2254
BstXI CCANNNNNNTGG 2 cut(s) 286, 1774
BstYI RGATCY 2 cut(s) 829, 2254
BsuI GTATCC 2 cut(s) 1890, 1915
BsuRI GGCC 4 cut(s) 1022, 2044, 2159, 2317
BtgI CCRYGG 1 cut(s) 279
BtgZI GCGATG 1 cut(s) 2081
BtsIMutI CAGTG 5 cut(s) 214, 622, 1476, 1672, 1949
BtuMI TCGCGA 1 cut(s) 411
BveI ACCTGC 1 cut(s) 1131
Cac8I GCNNGC 5 cut(s) 93, 413, 417, 738, 1729
CaiI CAGNNNCTG 4 cut(s) 1256, 1514, 1979, 2300
CciI TCATGA 3 cut(s) 397, 456, 1471
CfoI GCGC 4 cut(s) 20, 347, 465, 708
Cfr10I RCCGGY 1 cut(s) 541
Cfr13I GGNCC 5 cut(s) 134, 823, 950, 1403, 2157
CseI GACGC 2 cut(s) 1725, 2419
Csp6I GTAC 7 cut(s) 294, 606, 956, 1206, 1940, 2168, 2504
CspCI CAANNNNNGTGG 2 cut(s) 1563, 1598
CviQI GTAC 7 cut(s) 294, 606, 956, 1206, 1940, 2168, 2504
DpnI GATC 4 cut(s) 831, 1625, 1638, 2256
DpnII GATC 4 cut(s) 829, 1623, 1636, 2254
DraI TTTAAA 1 cut(s) 1150
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
EaeI YGGCCR 1 cut(s) 2315
Eam1104I CTCTTC 6 cut(s) 61, 146, 654, 867, 1599, 1899
EarI CTCTTC 6 cut(s) 61, 146, 654, 867, 1599, 1899
Eco105I TACGTA 1 cut(s) 1878
Eco130I CCWWGG 4 cut(s) 279, 988, 1679, 1719
Eco24I GRGCYC 1 cut(s) 66
Eco47I GGWCC 4 cut(s) 134, 823, 950, 1403
Eco47III AGCGCT 1 cut(s) 707
Eco57I CTGAAG 3 cut(s) 598, 1500, 2322
EcoNI CCTNNNNNAGG 1 cut(s) 768
EcoO109I RGGNCCY 3 cut(s) 134, 823, 2157
EcoRII CCWGG 5 cut(s) 357, 727, 825, 2010, 2309
EcoT14I CCWWGG 4 cut(s) 279, 988, 1679, 1719
EcoT22I ATGCAT 2 cut(s) 205, 1330
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 4 cut(s) 279, 988, 1679, 1719
Esp3I CGTCTC 1 cut(s) 1743
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FaqI GGGAC 3 cut(s) 746, 936, 1131
FauI CCCGC 3 cut(s) 140, 844, 1736
FblI GTMKAC 1 cut(s) 1026
Fnu4HI GCNGC 8 cut(s) 16, 145, 420, 704, 1506, 1764, 1869, 2315
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 8 cut(s) 16, 145, 420, 704, 1506, 1764, 1869, 2315
FspBI CTAG 3 cut(s) 989, 1212, 1680
GlaI GCGC 4 cut(s) 19, 346, 464, 707
GluI GCNGC 8 cut(s) 16, 145, 420, 704, 1506, 1764, 1869, 2315
GsaI CCCAGC 1 cut(s) 1118
GsuI CTGGAG 4 cut(s) 557, 711, 1181, 1920
HaeII RGCGCY 2 cut(s) 348, 709
HaeIII GGCC 4 cut(s) 1022, 2044, 2159, 2317
HapII CCGG 1 cut(s) 542
HgaI GACGC 2 cut(s) 1725, 2419
HhaI GCGC 4 cut(s) 20, 347, 465, 708
Hin1I GRCGYC 1 cut(s) 2430
Hin6I GCGC 4 cut(s) 18, 345, 463, 706
HinP1I GCGC 4 cut(s) 18, 345, 463, 706
HincII GTYRAC 1 cut(s) 2394
HindII GTYRAC 1 cut(s) 2394
HindIII AAGCTT 2 cut(s) 89, 1745
HinfI GANTC 8 cut(s) 105, 1070, 1290, 1552, 1670, 1778, 2338, 2390
HpaII CCGG 1 cut(s) 542
HphI GGTGA 2 cut(s) 56, 755
Hpy166II GTNNAC 5 cut(s) 104, 788, 1027, 1093, 2394
Hpy188I TCNGA 6 cut(s) 141, 370, 585, 1006, 2422, 2518
Hpy8I GTNNAC 5 cut(s) 104, 788, 1027, 1093, 2394
Hpy99I CGWCG 1 cut(s) 2435
HpyAV CCTTC 5 cut(s) 207, 622, 658, 1031, 1627
HpyCH4IV ACGT 4 cut(s) 505, 1309, 1877, 2475
HpySE526I ACGT 4 cut(s) 505, 1309, 1877, 2475
Hsp92I GRCGYC 1 cut(s) 2430
HspAI GCGC 4 cut(s) 18, 345, 463, 706
KpnI GGTACC 1 cut(s) 297
Kzo9I GATC 4 cut(s) 829, 1623, 1636, 2254
LguI GCTCTTC 1 cut(s) 146
LmnI GCTCC 5 cut(s) 216, 538, 986, 1162, 1736
Lsp1109I GCAGC 7 cut(s) 2, 156, 406, 715, 1492, 1750, 1880
LweI GCATC 7 cut(s) 190, 450, 1309, 1337, 1400, 1714, 2211
MaeI CTAG 3 cut(s) 989, 1212, 1680
MaeII ACGT 4 cut(s) 505, 1309, 1877, 2475
MaeIII GTNAC 3 cut(s) 1834, 1990, 2030
MalI GATC 4 cut(s) 831, 1625, 1638, 2256
MbiI CCGCTC 2 cut(s) 839, 1731
MboI GATC 4 cut(s) 829, 1623, 1636, 2254
MfeI CAATTG 1 cut(s) 1061
MflI RGATCY 2 cut(s) 829, 2254
MhlI GDGCHC 3 cut(s) 66, 158, 790
MlyI GAGTC 7 cut(s) 99, 1079, 1299, 1546, 1787, 2347, 2399
MmeI TCCRAC 4 cut(s) 1047, 1506, 2218, 2267
Mph1103I ATGCAT 2 cut(s) 205, 1330
MroXI GAANNNNTTC 1 cut(s) 1803
MslI CAYNNNNRTG 3 cut(s) 1109, 1772, 2346
MspA1I CMGCKG 2 cut(s) 147, 1505
MspI CCGG 1 cut(s) 542
MspR9I CCNGG 5 cut(s) 359, 729, 827, 2012, 2311
MunI CAATTG 1 cut(s) 1061
MvaI CCWGG 5 cut(s) 359, 729, 827, 2012, 2311
MvnI CGCG 2 cut(s) 411, 1736
NcoI CCATGG 1 cut(s) 279
NdeII GATC 4 cut(s) 829, 1623, 1636, 2254
NlaIV GGNNCC 6 cut(s) 135, 218, 295, 540, 952, 994
NmuCI GTSAC 1 cut(s) 1990
NruI TCGCGA 1 cut(s) 411
NsiI ATGCAT 2 cut(s) 205, 1330
PagI TCATGA 3 cut(s) 397, 456, 1471
PaqCI CACCTGC 1 cut(s) 1131
PciSI GCTCTTC 1 cut(s) 146
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PdmI GAANNNNTTC 1 cut(s) 1803
PfeI GAWTC 1 cut(s) 1670
PfoI TCCNGGA 1 cut(s) 727
PkrI GCNGC 8 cut(s) 17, 146, 421, 705, 1507, 1765, 1870, 2316
PleI GAGTC 7 cut(s) 99, 1078, 1298, 1546, 1786, 2346, 2398
PpsI GAGTC 7 cut(s) 99, 1078, 1298, 1546, 1786, 2346, 2398
Ppu21I YACGTR 2 cut(s) 506, 1878
PpuMI RGGWCCY 2 cut(s) 134, 823
PsiI TTATAA 2 cut(s) 2085, 2105
Psp1406I AACGTT 1 cut(s) 2475
Psp5II RGGWCCY 2 cut(s) 134, 823
Psp6I CCWGG 5 cut(s) 357, 727, 825, 2010, 2309
PspFI CCCAGC 1 cut(s) 1114
PspGI CCWGG 5 cut(s) 357, 727, 825, 2010, 2309
PspN4I GGNNCC 6 cut(s) 135, 218, 295, 540, 952, 994
PspPI GGNCC 5 cut(s) 134, 823, 950, 1403, 2157
PspPPI RGGWCCY 2 cut(s) 134, 823
PsrI GAACNNNNNNTAC 2 cut(s) 2102, 2134
PstI CTGCAG 1 cut(s) 1510
PstNI CAGNNNCTG 4 cut(s) 1256, 1514, 1979, 2300
PsuI RGATCY 2 cut(s) 829, 2254
PvuII CAGCTG 1 cut(s) 1505
RruI TCGCGA 1 cut(s) 411
RsaI GTAC 7 cut(s) 295, 607, 957, 1207, 1941, 2169, 2505
RsaNI GTAC 7 cut(s) 294, 606, 956, 1206, 1940, 2168, 2504
RseI CAYNNNNRTG 3 cut(s) 1109, 1772, 2346
SapI GCTCTTC 1 cut(s) 146
SatI GCNGC 8 cut(s) 16, 145, 420, 704, 1506, 1764, 1869, 2315
Sau3AI GATC 4 cut(s) 829, 1623, 1636, 2254
Sau96I GGNCC 5 cut(s) 134, 823, 950, 1403, 2157
SchI GAGTC 7 cut(s) 99, 1079, 1299, 1546, 1787, 2347, 2399
ScrFI CCNGG 5 cut(s) 359, 729, 827, 2012, 2311
SduI GDGCHC 3 cut(s) 66, 158, 790
SfaNI GCATC 7 cut(s) 190, 450, 1309, 1337, 1400, 1714, 2211
SfcI CTRYAG 2 cut(s) 1407, 1506
SinI GGWCC 4 cut(s) 134, 823, 950, 1403
SmiMI CAYNNNNRTG 3 cut(s) 1109, 1772, 2346
SmlI CTYRAG 5 cut(s) 1229, 1891, 1995, 2440, 2452
SmoI CTYRAG 5 cut(s) 1229, 1891, 1995, 2440, 2452
SnaBI TACGTA 1 cut(s) 1878
SsiI CCGC 6 cut(s) 147, 837, 1729, 1734, 1771, 2314
SspI AATATT 1 cut(s) 1795
SspMI CTAG 3 cut(s) 989, 1212, 1680
StyD4I CCNGG 5 cut(s) 357, 727, 825, 2010, 2309
StyI CCWWGG 4 cut(s) 279, 988, 1679, 1719
TaiI ACGT 4 cut(s) 508, 1312, 1880, 2478
TaqI TCGA 7 cut(s) 66, 333, 1286, 1646, 1781, 2231, 2433
TaqII GACCGA 1 cut(s) 1744
TatI WGTACW 1 cut(s) 1939
TauI GCSGC 1 cut(s) 2317
TfiI GAWTC 1 cut(s) 1670
TscAI CASTG 5 cut(s) 214, 622, 1483, 1672, 1949
TseFI GTSAC 1 cut(s) 1990
TseI GCWGC 7 cut(s) 15, 144, 419, 703, 1505, 1763, 1868
Tsp45I GTSAC 1 cut(s) 1990
TspDTI ATGAA 7 cut(s) 672, 1050, 1185, 1646, 1833, 1902, 2364
TspGWI ACGGA 1 cut(s) 1324
TspRI CASTG 5 cut(s) 214, 622, 1483, 1672, 1949
VneI GTGCAC 1 cut(s) 786
VpaK11BI GGWCC 4 cut(s) 134, 823, 950, 1403
XagI CCTNNNNNAGG 1 cut(s) 768
XapI RAATTY 2 cut(s) 1187, 1558
XmaJI CCTAGG 2 cut(s) 988, 1679
XmiI GTMKAC 1 cut(s) 1026
XmnI GAANNNNTTC 1 cut(s) 1803
XspI CTAG 3 cut(s) 989, 1212, 1680
Zsp2I ATGCAT 2 cut(s) 205, 1330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.