Rmu_sc0001350.1_g000031

Protein ROOT HAIR DEFECTIVE 3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001350.1
OG0000525
Physical Location & Seq
Forward (+)
168249 .. 173511
5263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001350.1_g000031.1.cds

Sequence Viewer

Length: 1644 bp
atggagaaagattactgtgttacgcaactcatcgatggcaatggtgaattcaatgcttctgggatcaacaacttcacaaaggacgtcaagtttactgcgtccggagaatcctatgccgtcgttgccgtcatgggtcctcagagcagtgggaagagcactttgatgaaccatcttttccacaccgacttcaaggagatgaatggcaaagaaggaaggaagcaaacaacattgggcatttggatagccaagtgcgttggcatcacgccttacacgatcgccgtggatttggagggcagtgatggcagggagagaggctcgcatgataccgcattcgagaaacaaagtgctctatttgcactagcagtttcagacattgtgctgataaatatgtggtgcactgaaattggtcgagagcaggctgcaaacaaacctttactaagaacagtcttccaggttatgatgagcttattcggccccggccgtaagaagacactactgtttgttgtacgtgataaaattccagagaccccgttagataagctcaaggctactttattggaagatattcataagatatgggatgaagttccgaagccctatgaacatgaaagtacccatctcaatgaatgtttcagggtagaagtagttgctatgtcccattacgtctacgagaggaagaagtttgaggaggaggttgctgaactgaggcagcgtttttccaattctatttctcctggagggcttgctggtggtgatagaagaggtgttacccctgcatcaggattttctttcagtgcgcagcaaatttggaaacaaatcaaagagaacaaggacctggatcttccttctctcaatgttatggttgcaaactttcggtgtgatgatattgcgaaacagaaatttgatgagttgaccaaaaatcaggattggttgaaattggaggaagctgtcaaaagtggtcctgtgaaaggtttcggtgaaagtctcagcttaattctagagacatgttttaatgaatatgagatagaggccaaattctttgacgaaggtgtaaagaacacgaaacgacatgacgtattggagaaaagagcatatgagtttgtgcaacctgcctatactaccatgctcgaacacatacgttctaaagcatataaagagtttgaagcgagattgactgaggcattagccaaaggagaagcattagttgcagctgttgaggcccttactcgggcttctattactgagtttgaccaaggatgtgcagatgctgccataaaacaagctgttaagtgggattcctcaagcattcgggataaactccgatctgatatagaagcacgtgtgcattgtgtttataatgataacatcattgcagacttgaaaagaatgaatctggaaaataaggaggaggctcagaagcagatagataggttaatagaattgcatcaacaagaccaagaaacaaatgccagacagatggagcaactgaaggaactaaacagcagggggctactttattttattcgacagttgttcgacgacccgaacgtaaaaattcttgccaccttagtgaatcctgaattgggtgcggcactggaggtaggaagtcaaatacttaaagtgactgatcagattaagctgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RHD3

Protein Analysis

547

Amino Acids

61.87

Weight (kDa)

5.6

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45160
fragaria_vesca FvH4_3g11890
malus_domestica MD00G1023300.v1.1 MD00G1023500.v1.1 MD00G1046300.v1.1 MD00G1046400.v1.1 MD00G1047200.v1.1 MD05G1180600.v1.1 MD05G1256900.v1.1 MD05G1257200.v1.1 MD05G1257300.v1.1 MD05G1257400.v1.1 MD05G1257900.v1.1 MD05G1258000.v1.1 MD10G1213100.v1.1 MD10G1237400.v1.1
prunus_persica Prupe.4G106400_v2.0.a1 Prupe.4G106400_v2.0.a1 Prupe.4G106900_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.I001700_v2.0.a1
pyrus_communis pycom05g23620 pycom05g23630 pycom05g23880 pycom05g24090 pycom05g24270 pycom10g19870
rosa_chinensis RchiOBHm_Chr5g0019311 RchiOBHm_Chr5g0019391 RchiOBHm_Chr5g0019401 RchiOBHm_Chr7g0226131 RchiOBHm_Chr7g0226141 RchiOBHm_Chr7g0226161
rosa_laevigata RLG00000001766 RLG00000001767 RLG00000032437 RLG00000032441 RLG00000032445
rosa_multiflora Rmu_sc0001350.1_g000022 Rmu_sc0001350.1_g000031 Rmu_sc0002141.1_g000028 Rmu_sc0002759.1_g000037 Rmu_sc0002759.1_g000039 Rmu_sc0005292.1_g000004 Rmu_sc0005292.1_g000050
rosa_roxburghii Rroxscaffold_1G00058650 Rroxscaffold_1G00058670 Rroxscaffold_1G00074270 Rroxscaffold_2G00108890 Rroxscaffold_2G00125570
rosa_rugosa Rorug05G0050100 Rorug05G0050200 Rorug05G0050300 Rorug05G0050500 Rorug05G0050600 Rorug05G0050700
rosa_samantha Rh5AG140700 Rh5AG141000 Rh5AG141300 Rh5AG390000 Rh5BG139700 Rh5BG139800 Rh5BG139900 Rh5BG140000 Rh5CG151000 Rh5CG151500 Rh5CG151600 Rh5DG140200 Rh5DG140400 Rh5DG140600 Rh7AG368100 Rh7AG381400 Rh7AG381700 Rh7CG386400 Rh7CG400900 Rh7CG401200 Rh7DG380400 Rh7DG380500
rosa_wichuraiana Rw5G012510 Rw5G012530 Rw5G012540 Rw7G031980 Rw7G031990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1356
AatII GACGTC 1 cut(s) 87
Acc16I TGCGCA 1 cut(s) 798
Acc36I ACCTGC 1 cut(s) 1117
AccI GTMKAC 1 cut(s) 666
AccIII TCCGGA 1 cut(s) 101
AciI CCGC 2 cut(s) 327, 1589
AclWI GGATC 2 cut(s) 71, 846
AcoI YGGCCR 1 cut(s) 478
AcsI RAATTY 6 cut(s) 47, 516, 804, 899, 1034, 1554
AcuI CTGAAG 1 cut(s) 1508
AcvI CACGTG 1 cut(s) 1340
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 2 cut(s) 507, 613
AfiI CCNNNNNNNGG 5 cut(s) 779, 968, 1227, 1228, 1583
AflIII ACRYGT 2 cut(s) 1004, 1339
AgsI TTSAA 5 cut(s) 52, 190, 934, 1163, 1381
AjnI CCWGG 3 cut(s) 450, 733, 834
AjuI GAANNNNNNNTTGG 2 cut(s) 1565, 1597
AleI CACNNNNGTG 1 cut(s) 1568
AluBI AGCT 7 cut(s) 465, 541, 947, 990, 1211, 1283, 1639
AluI AGCT 7 cut(s) 465, 541, 947, 990, 1211, 1283, 1639
Alw21I GWGCWC 3 cut(s) 158, 349, 398
Alw26I GTCTC 3 cut(s) 518, 989, 995
Alw44I GTGCAC 1 cut(s) 394
AlwI GGATC 2 cut(s) 71, 846
AlwNI CAGNNNCTG 1 cut(s) 1268
Ama87I CYCGRG 1 cut(s) 1227
Aor13HI TCCGGA 1 cut(s) 101
AoxI GGCC 4 cut(s) 472, 478, 1029, 1218
ApaLI GTGCAC 1 cut(s) 394
ApeKI GCWGC 5 cut(s) 419, 709, 799, 1208, 1268
ApoI RAATTY 6 cut(s) 47, 516, 804, 899, 1034, 1554
Asp700I GAANNNNTTC 2 cut(s) 564, 971
AspLEI GCGC 1 cut(s) 799
AspS9I GGNCC 5 cut(s) 134, 473, 832, 959, 1219
AsuC2I CCSGG 1 cut(s) 477
AsuHPI GGTGA 3 cut(s) 56, 764, 989
AvaI CYCGRG 1 cut(s) 1227
AvaII GGWCC 3 cut(s) 134, 832, 959
BaeGI GKGCMC 1 cut(s) 398
BarI GAAGNNNNNNTAC 2 cut(s) 751, 783
BbrPI CACGTG 1 cut(s) 1340
BbsI GAAGAC 2 cut(s) 439, 494
Bbv12I GWGCWC 3 cut(s) 158, 349, 398
BbvI GCAGC 5 cut(s) 406, 721, 811, 1220, 1255
BccI CCATC 5 cut(s) 29, 177, 293, 624, 1471
BceAI ACGGC 4 cut(s) 101, 110, 263, 465
BciT130I CCWGG 3 cut(s) 452, 735, 836
BclI TGATCA 1 cut(s) 1627
BcnI CCSGG 1 cut(s) 477
BcoDI GTCTC 3 cut(s) 518, 989, 995
BfaI CTAG 2 cut(s) 359, 998
BfmI CTRYAG 1 cut(s) 1640
BfuAI ACCTGC 1 cut(s) 1117
BisI GCNGC 6 cut(s) 420, 710, 800, 1209, 1269, 1590
BlsI GCNGC 6 cut(s) 421, 711, 801, 1210, 1270, 1591
Bme1390I CCNGG 4 cut(s) 452, 477, 735, 836
Bme18I GGWCC 3 cut(s) 134, 832, 959
BmeT110I CYCGRG 1 cut(s) 1227
BmgT120I GGNCC 5 cut(s) 134, 473, 832, 959, 1219
BmiI GGNNCC 2 cut(s) 135, 475
BmrFI CCNGG 4 cut(s) 452, 477, 735, 836
BmsI GCATC 4 cut(s) 267, 785, 1255, 1453
BpiI GAAGAC 2 cut(s) 439, 494
BplI GAGNNNNNCTC 2 cut(s) 299, 331
BpmI CTGGAG 2 cut(s) 756, 1616
BpuEI CTTGAG 2 cut(s) 527, 1285
BpuMI CCSGG 1 cut(s) 477
Bsa29I ATCGAT 1 cut(s) 33
BsaAI YACGTR 2 cut(s) 509, 1340
BsaHI GRCGYC 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 518
BsaJI CCNNGG 3 cut(s) 279, 475, 1252
BsaWI WCCGGW 1 cut(s) 101
Bsc4I CCNNNNNNNGG 5 cut(s) 779, 968, 1227, 1228, 1583
Bse1I ACTGG 1 cut(s) 1599
Bse3DI GCAATG 2 cut(s) 46, 1368
BseAI TCCGGA 1 cut(s) 101
BseBI CCWGG 3 cut(s) 452, 735, 836
BseCI ATCGAT 1 cut(s) 33
BseDI CCNNGG 3 cut(s) 279, 475, 1252
BseGI GGATG 2 cut(s) 586, 1262
BseLI CCNNNNNNNGG 5 cut(s) 779, 968, 1227, 1228, 1583
BseMI GCAATG 2 cut(s) 46, 1368
BseMII CTCAG 6 cut(s) 152, 695, 1000, 1167, 1233, 1427
BseNI ACTGG 1 cut(s) 1599
BseRI GAGGAG 3 cut(s) 701, 704, 1421
BseSI GKGCMC 1 cut(s) 398
BseX3I CGGCCG 1 cut(s) 478
BseXI GCAGC 5 cut(s) 406, 721, 811, 1220, 1255
BsgI GTGCAG 1 cut(s) 1281
Bsh1285I CGRYCG 2 cut(s) 276, 481
BshFI GGCC 4 cut(s) 474, 480, 1031, 1220
BshVI ATCGAT 1 cut(s) 33
BsiEI CGRYCG 2 cut(s) 276, 481
BsiHKAI GWGCWC 3 cut(s) 158, 349, 398
BsiHKCI CYCGRG 1 cut(s) 1227
BsiSI CCGG 2 cut(s) 102, 477
BslFI GGGAC 1 cut(s) 640
BslI CCNNNNNNNGG 5 cut(s) 779, 968, 1227, 1228, 1583
BsmAI GTCTC 3 cut(s) 518, 989, 995
BsmFI GGGAC 1 cut(s) 640
BsmI GAATGC 2 cut(s) 329, 1305
BsnI GGCC 4 cut(s) 474, 480, 1031, 1220
Bso31I GGTCTC 1 cut(s) 518
BsoBI CYCGRG 1 cut(s) 1227
Bsp1286I GDGCHC 3 cut(s) 158, 349, 398
Bsp13I TCCGGA 1 cut(s) 101
Bsp143I GATC 5 cut(s) 63, 273, 838, 1322, 1627
BspACI CCGC 2 cut(s) 327, 1589
BspANI GGCC 4 cut(s) 474, 480, 1031, 1220
BspCNI CTCAG 6 cut(s) 151, 696, 999, 1168, 1234, 1426
BspDI ATCGAT 1 cut(s) 33
BspEI TCCGGA 1 cut(s) 101
BspLI GGNNCC 2 cut(s) 135, 475
BspMI ACCTGC 1 cut(s) 1117
BspPI GGATC 2 cut(s) 71, 846
BspQI GCTCTTC 1 cut(s) 146
BspTNI GGTCTC 1 cut(s) 518
BsrDI GCAATG 2 cut(s) 46, 1368
BsrI ACTGG 1 cut(s) 1599
BssECI CCNNGG 3 cut(s) 279, 475, 1252
BssMI GATC 5 cut(s) 63, 273, 838, 1322, 1627
BssNI GRCGYC 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 1252
Bst2UI CCWGG 3 cut(s) 452, 735, 836
Bst4CI ACNGT 4 cut(s) 17, 445, 498, 1530
Bst6I CTCTTC 2 cut(s) 146, 754
BstACI GRCGYC 1 cut(s) 84
BstAPI GCANNNNNTGC 2 cut(s) 1205, 1268
BstBAI YACGTR 2 cut(s) 509, 1340
BstC8I GCNNGC 3 cut(s) 317, 417, 744
BstDEI CTNAG 8 cut(s) 138, 437, 704, 986, 1176, 1242, 1413, 1567
BstDSI CCRYGG 1 cut(s) 279
BstENI CCTNNNNNAGG 2 cut(s) 777, 966
BstF5I GGATG 2 cut(s) 586, 1262
BstHHI GCGC 1 cut(s) 799
BstKTI GATC 5 cut(s) 66, 276, 841, 1325, 1630
BstMAI GTCTC 3 cut(s) 518, 989, 995
BstMBI GATC 5 cut(s) 63, 273, 838, 1322, 1627
BstMCI CGRYCG 2 cut(s) 276, 481
BstMWI GCNNNNNNNGC 7 cut(s) 122, 300, 353, 471, 1205, 1217, 1268
BstNI CCWGG 3 cut(s) 452, 735, 836
BstNSI RCATGY 1 cut(s) 1008
BstSCI CCNGG 4 cut(s) 450, 475, 733, 834
BstSFI CTRYAG 1 cut(s) 1640
BstSLI GKGCMC 1 cut(s) 398
BstV1I GCAGC 5 cut(s) 406, 721, 811, 1220, 1255
BstV2I GAAGAC 2 cut(s) 439, 494
BstX2I RGATCY 1 cut(s) 838
BstXI CCANNNNNNTGG 1 cut(s) 1477
BstYI RGATCY 1 cut(s) 838
BstZI CGGCCG 1 cut(s) 478
Bsu15I ATCGAT 1 cut(s) 33
BsuRI GGCC 4 cut(s) 474, 480, 1031, 1220
BsuTUI ATCGAT 1 cut(s) 33
BtgI CCRYGG 1 cut(s) 279
BtsCI GGATG 2 cut(s) 586, 1262
BtsI GCAGTG 2 cut(s) 151, 301
BtsIMutI CAGTG 5 cut(s) 151, 301, 396, 799, 1592
BveI ACCTGC 1 cut(s) 1117
Cac8I GCNNGC 3 cut(s) 317, 417, 744
CaiI CAGNNNCTG 1 cut(s) 1268
CfoI GCGC 1 cut(s) 799
Cfr13I GGNCC 5 cut(s) 134, 473, 832, 959, 1219
ClaI ATCGAT 1 cut(s) 33
CseI GACGC 1 cut(s) 87
Csp6I GTAC 2 cut(s) 506, 612
CviAII CATG 6 cut(s) 130, 320, 605, 1005, 1070, 1123
CviQI GTAC 2 cut(s) 506, 612
DdeI CTNAG 8 cut(s) 138, 437, 704, 986, 1176, 1242, 1413, 1567
DpnI GATC 5 cut(s) 65, 275, 840, 1324, 1629
DpnII GATC 5 cut(s) 63, 273, 838, 1322, 1627
EaeI YGGCCR 1 cut(s) 478
EagI CGGCCG 1 cut(s) 478
Eam1104I CTCTTC 2 cut(s) 146, 754
EarI CTCTTC 2 cut(s) 146, 754
EclXI CGGCCG 1 cut(s) 478
Eco130I CCWWGG 1 cut(s) 1252
Eco31I GGTCTC 1 cut(s) 518
Eco47I GGWCC 3 cut(s) 134, 832, 959
Eco52I CGGCCG 1 cut(s) 478
Eco57I CTGAAG 1 cut(s) 1508
Eco72I CACGTG 1 cut(s) 1340
Eco88I CYCGRG 1 cut(s) 1227
EcoNI CCTNNNNNAGG 2 cut(s) 777, 966
EcoO109I RGGNCCY 3 cut(s) 134, 832, 1219
EcoRI GAATTC 1 cut(s) 47
EcoRII CCWGG 3 cut(s) 450, 733, 834
EcoT14I CCWWGG 1 cut(s) 1252
ErhI CCWWGG 1 cut(s) 1252
FaeI CATG 6 cut(s) 133, 323, 608, 1008, 1073, 1126
FaqI GGGAC 1 cut(s) 640
FatI CATG 6 cut(s) 129, 319, 604, 1004, 1069, 1122
FauNDI CATATG 1 cut(s) 1093
FbaI TGATCA 1 cut(s) 1627
FblI GTMKAC 1 cut(s) 666
Fnu4HI GCNGC 6 cut(s) 420, 710, 800, 1209, 1269, 1590
FokI GGATG 2 cut(s) 593, 1269
Fsp4HI GCNGC 6 cut(s) 420, 710, 800, 1209, 1269, 1590
FspBI CTAG 2 cut(s) 359, 998
FspI TGCGCA 1 cut(s) 798
GlaI GCGC 1 cut(s) 798
GluI GCNGC 6 cut(s) 420, 710, 800, 1209, 1269, 1590
GsuI CTGGAG 2 cut(s) 756, 1616
HaeIII GGCC 4 cut(s) 474, 480, 1031, 1220
HapII CCGG 2 cut(s) 102, 477
HgaI GACGC 1 cut(s) 87
HhaI GCGC 1 cut(s) 799
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 6 cut(s) 133, 323, 608, 1008, 1073, 1126
Hin6I GCGC 1 cut(s) 797
HinP1I GCGC 1 cut(s) 797
HincII GTYRAC 1 cut(s) 912
HindII GTYRAC 1 cut(s) 912
HinfI GANTC 4 cut(s) 107, 1295, 1390, 1573
HpaII CCGG 2 cut(s) 102, 477
HphI GGTGA 3 cut(s) 56, 764, 989
Hpy166II GTNNAC 4 cut(s) 93, 396, 667, 912
Hpy188I TCNGA 7 cut(s) 141, 370, 591, 1322, 1327, 1416, 1632
Hpy8I GTNNAC 4 cut(s) 93, 396, 667, 912
Hpy99I CGWCG 2 cut(s) 122, 1541
HpyAV CCTTC 5 cut(s) 203, 207, 855, 1040, 1483
HpyCH4III ACNGT 4 cut(s) 17, 445, 498, 1530
HpyCH4IV ACGT 7 cut(s) 84, 508, 663, 1074, 1138, 1339, 1548
HpyF10VI GCNNNNNNNGC 7 cut(s) 122, 300, 353, 471, 1205, 1217, 1268
HpyF3I CTNAG 8 cut(s) 138, 437, 704, 986, 1176, 1242, 1413, 1567
HpySE526I ACGT 7 cut(s) 84, 508, 663, 1074, 1138, 1339, 1548
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 6 cut(s) 133, 323, 608, 1008, 1073, 1126
HspAI GCGC 1 cut(s) 797
Kpn2I TCCGGA 1 cut(s) 101
Ksp22I TGATCA 1 cut(s) 1627
Kzo9I GATC 5 cut(s) 63, 273, 838, 1322, 1627
LguI GCTCTTC 1 cut(s) 146
LmnI GCTCC 1 cut(s) 1480
Lsp1109I GCAGC 5 cut(s) 406, 721, 811, 1220, 1255
LweI GCATC 4 cut(s) 267, 785, 1255, 1453
MaeI CTAG 2 cut(s) 359, 998
MaeII ACGT 7 cut(s) 84, 508, 663, 1074, 1138, 1339, 1548
MaeIII GTNAC 3 cut(s) 19, 766, 1621
MalI GATC 5 cut(s) 65, 275, 840, 1324, 1629
MboI GATC 5 cut(s) 63, 273, 838, 1322, 1627
MboII GAAGA 7 cut(s) 163, 439, 499, 572, 688, 771, 833
MflI RGATCY 1 cut(s) 838
MhlI GDGCHC 3 cut(s) 158, 349, 398
MroI TCCGGA 1 cut(s) 101
MroXI GAANNNNTTC 2 cut(s) 564, 971
MseI TTAA 6 cut(s) 992, 1011, 1287, 1433, 1617, 1635
MslI CAYNNNNRTG 3 cut(s) 161, 621, 1568
MspA1I CMGCKG 1 cut(s) 1211
MspI CCGG 2 cut(s) 102, 477
MspR9I CCNGG 4 cut(s) 452, 477, 735, 836
Mva1269I GAATGC 2 cut(s) 329, 1305
MvaI CCWGG 3 cut(s) 452, 735, 836
MwoI GCNNNNNNNGC 7 cut(s) 122, 300, 353, 471, 1205, 1217, 1268
NciI CCSGG 1 cut(s) 477
NdeI CATATG 1 cut(s) 1093
NdeII GATC 5 cut(s) 63, 273, 838, 1322, 1627
NlaIII CATG 6 cut(s) 133, 323, 608, 1008, 1073, 1126
NlaIV GGNNCC 2 cut(s) 135, 475
NmuCI GTSAC 1 cut(s) 1621
NsbI TGCGCA 1 cut(s) 798
NspI RCATGY 1 cut(s) 1008
OliI CACNNNNGTG 1 cut(s) 1568
PciI ACATGT 1 cut(s) 1004
PciSI GCTCTTC 1 cut(s) 146
PcsI WCGNNNNNNNCGW 2 cut(s) 269, 1545
PctI GAATGC 2 cut(s) 329, 1305
PdmI GAANNNNTTC 2 cut(s) 564, 971
PfeI GAWTC 4 cut(s) 107, 1295, 1390, 1573
PfoI TCCNGGA 1 cut(s) 733
PkrI GCNGC 6 cut(s) 421, 711, 801, 1210, 1270, 1591
Ple19I CGATCG 1 cut(s) 276
PmaCI CACGTG 1 cut(s) 1340
PmlI CACGTG 1 cut(s) 1340
Ppu21I YACGTR 2 cut(s) 509, 1340
PpuMI RGGWCCY 2 cut(s) 134, 832
PscI ACATGT 1 cut(s) 1004
PsiI TTATAA 1 cut(s) 1356
Psp5II RGGWCCY 2 cut(s) 134, 832
Psp6I CCWGG 3 cut(s) 450, 733, 834
PspCI CACGTG 1 cut(s) 1340
PspGI CCWGG 3 cut(s) 450, 733, 834
PspN4I GGNNCC 2 cut(s) 135, 475
PspPI GGNCC 5 cut(s) 134, 473, 832, 959, 1219
PspPPI RGGWCCY 2 cut(s) 134, 832
PstNI CAGNNNCTG 1 cut(s) 1268
PsuI RGATCY 1 cut(s) 838
PvuI CGATCG 1 cut(s) 276
PvuII CAGCTG 1 cut(s) 1211
RsaI GTAC 2 cut(s) 507, 613
RsaNI GTAC 2 cut(s) 506, 612
RseI CAYNNNNRTG 3 cut(s) 161, 621, 1568
SapI GCTCTTC 1 cut(s) 146
SaqAI TTAA 6 cut(s) 992, 1011, 1287, 1433, 1617, 1635
SatI GCNGC 6 cut(s) 420, 710, 800, 1209, 1269, 1590
Sau3AI GATC 5 cut(s) 63, 273, 838, 1322, 1627
Sau96I GGNCC 5 cut(s) 134, 473, 832, 959, 1219
ScrFI CCNGG 4 cut(s) 452, 477, 735, 836
SduI GDGCHC 3 cut(s) 158, 349, 398
SfaNI GCATC 4 cut(s) 267, 785, 1255, 1453
SfcI CTRYAG 1 cut(s) 1640
SinI GGWCC 3 cut(s) 134, 832, 959
SmiMI CAYNNNNRTG 3 cut(s) 161, 621, 1568
SmlI CTYRAG 2 cut(s) 542, 1300
SmoI CTYRAG 2 cut(s) 542, 1300
SsiI CCGC 2 cut(s) 327, 1589
SspMI CTAG 2 cut(s) 359, 998
StyD4I CCNGG 4 cut(s) 450, 475, 733, 834
StyI CCWWGG 1 cut(s) 1252
TaaI ACNGT 4 cut(s) 17, 445, 498, 1530
TaiI ACGT 7 cut(s) 87, 511, 666, 1077, 1141, 1342, 1551
TaqI TCGA 6 cut(s) 33, 333, 409, 1128, 1525, 1536
TauI GCSGC 1 cut(s) 1592
TfiI GAWTC 4 cut(s) 107, 1295, 1390, 1573
Tru1I TTAA 6 cut(s) 992, 1011, 1287, 1433, 1617, 1635
Tru9I TTAA 6 cut(s) 992, 1011, 1287, 1433, 1617, 1635
TscAI CASTG 5 cut(s) 151, 301, 403, 799, 1599
TseFI GTSAC 1 cut(s) 1621
TseI GCWGC 5 cut(s) 419, 709, 799, 1208, 1268
Tsp45I GTSAC 1 cut(s) 1621
TspDTI ATGAA 9 cut(s) 179, 212, 557, 597, 615, 621, 639, 1029, 1403
TspRI CASTG 5 cut(s) 151, 301, 403, 799, 1599
VneI GTGCAC 1 cut(s) 394
VpaK11BI GGWCC 3 cut(s) 134, 832, 959
XagI CCTNNNNNAGG 2 cut(s) 777, 966
XapI RAATTY 6 cut(s) 47, 516, 804, 899, 1034, 1554
XbaI TCTAGA 1 cut(s) 997
XceI RCATGY 1 cut(s) 1008
XmiI GTMKAC 1 cut(s) 666
XmnI GAANNNNTTC 2 cut(s) 564, 971
XspI CTAG 2 cut(s) 359, 998
ZraI GACGTC 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.