Rmu_sc0005292.1_g000004

Protein ROOT HAIR DEFECTIVE 3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005292.1
OG0000525
Physical Location & Seq
Reverse (-)
21441 .. 22971
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005292.1_g000004.1.cds

Sequence Viewer

Length: 390 bp
atggaggacgatcacagtgtcatacaactaatcgacggcgatggcatattcaatgctgttggtctggacaaatttgtgaaggaagtgaatcttgctgggtgcggaatatcctatgctgttgtttccattatgggacctcagagtagcgggaagagcactttattgaaccatcttttccacactaaattcagggagatgaatgcagcagcaggaagaaggcaaacaacacagggtatttggctggccgagtgtgttgagattaagcctttcacgattgtcatggatttggagggcaacgatggcaaggagagaggccaggatattgcatttgagaaacaagctgccctatttgcgctagcaatttcagacattctaatgataaatatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RHD3

Protein Analysis

129

Amino Acids

14.09

Weight (kDa)

4.9

Isoelectric Point (pI)

27.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45160
fragaria_vesca FvH4_3g11890
malus_domestica MD00G1023300.v1.1 MD00G1023500.v1.1 MD00G1046300.v1.1 MD00G1046400.v1.1 MD00G1047200.v1.1 MD05G1180600.v1.1 MD05G1256900.v1.1 MD05G1257200.v1.1 MD05G1257300.v1.1 MD05G1257400.v1.1 MD05G1257900.v1.1 MD05G1258000.v1.1 MD10G1213100.v1.1 MD10G1237400.v1.1
prunus_persica Prupe.4G106400_v2.0.a1 Prupe.4G106400_v2.0.a1 Prupe.4G106900_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.I001700_v2.0.a1
pyrus_communis pycom05g23620 pycom05g23630 pycom05g23880 pycom05g24090 pycom05g24270 pycom10g19870
rosa_chinensis RchiOBHm_Chr5g0019311 RchiOBHm_Chr5g0019391 RchiOBHm_Chr5g0019401 RchiOBHm_Chr7g0226131 RchiOBHm_Chr7g0226141 RchiOBHm_Chr7g0226161
rosa_laevigata RLG00000001766 RLG00000001767 RLG00000032437 RLG00000032441 RLG00000032445
rosa_multiflora Rmu_sc0001350.1_g000022 Rmu_sc0001350.1_g000031 Rmu_sc0002141.1_g000028 Rmu_sc0002759.1_g000037 Rmu_sc0002759.1_g000039 Rmu_sc0005292.1_g000004 Rmu_sc0005292.1_g000050
rosa_roxburghii Rroxscaffold_1G00058650 Rroxscaffold_1G00058670 Rroxscaffold_1G00074270 Rroxscaffold_2G00108890 Rroxscaffold_2G00125570
rosa_rugosa Rorug05G0050100 Rorug05G0050200 Rorug05G0050300 Rorug05G0050500 Rorug05G0050600 Rorug05G0050700
rosa_samantha Rh5AG140700 Rh5AG141000 Rh5AG141300 Rh5AG390000 Rh5BG139700 Rh5BG139800 Rh5BG139900 Rh5BG140000 Rh5CG151000 Rh5CG151500 Rh5CG151600 Rh5DG140200 Rh5DG140400 Rh5DG140600 Rh7AG368100 Rh7AG381400 Rh7AG381700 Rh7CG386400 Rh7CG400900 Rh7CG401200 Rh7DG380400 Rh7DG380500
rosa_wichuraiana Rw5G012510 Rw5G012530 Rw5G012540 Rw7G031980 Rw7G031990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 102, 147
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 2 cut(s) 71, 185
AgsI TTSAA 2 cut(s) 52, 166
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 1 cut(s) 341
AluI AGCT 1 cut(s) 341
Alw21I GWGCWC 1 cut(s) 158
AoxI GGCC 2 cut(s) 243, 313
ApeKI GCWGC 3 cut(s) 203, 206, 341
ApoI RAATTY 2 cut(s) 71, 185
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 1 cut(s) 134
AsuNHI GCTAGC 1 cut(s) 355
AvaII GGWCC 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 3 cut(s) 215, 218, 328
BccI CCATC 3 cut(s) 35, 177, 293
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 317
BfaI CTAG 1 cut(s) 356
BisI GCNGC 3 cut(s) 204, 207, 342
BlsI GCNGC 3 cut(s) 205, 208, 343
Bme1390I CCNGG 1 cut(s) 317
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 317
BmtI GCTAGC 1 cut(s) 359
BseBI CCWGG 1 cut(s) 317
BseMII CTCAG 1 cut(s) 152
BseXI GCAGC 3 cut(s) 215, 218, 328
BseYI CCCAGC 1 cut(s) 95
BshFI GGCC 2 cut(s) 245, 315
BsiHKAI GWGCWC 1 cut(s) 158
BslFI GGGAC 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 147
BsmI GAATGC 1 cut(s) 205
BsnI GGCC 2 cut(s) 245, 315
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 2 cut(s) 102, 147
BspANI GGCC 2 cut(s) 245, 315
BspCNI CTCAG 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 135
BspOI GCTAGC 1 cut(s) 359
BspQI GCTCTTC 1 cut(s) 146
BssMI GATC 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 1 cut(s) 17
Bst6I CTCTTC 1 cut(s) 146
BstC8I GCNNGC 2 cut(s) 243, 357
BstDEI CTNAG 1 cut(s) 138
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 1 cut(s) 13
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 3 cut(s) 153, 300, 350
BstNI CCWGG 1 cut(s) 317
BstSCI CCNGG 1 cut(s) 315
BstV1I GCAGC 3 cut(s) 215, 218, 328
BsuRI GGCC 2 cut(s) 245, 315
BtgZI GCGATG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 22
Cac8I GCNNGC 2 cut(s) 243, 357
CfoI GCGC 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 134
CviAII CATG 1 cut(s) 280
CviJI RGCY 5 cut(s) 241, 245, 265, 315, 341
CviKI_1 RGCY 5 cut(s) 241, 245, 265, 315, 341
DdeI CTNAG 1 cut(s) 138
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Eco47I GGWCC 1 cut(s) 134
EcoO109I RGGNCCY 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 315
FaeI CATG 1 cut(s) 283
FaiI YATR 6 cut(s) 23, 47, 114, 131, 281, 386
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FaqI GGGAC 1 cut(s) 147
FatI CATG 1 cut(s) 279
FauI CCCGC 1 cut(s) 140
Fnu4HI GCNGC 3 cut(s) 204, 207, 342
Fsp4HI GCNGC 3 cut(s) 204, 207, 342
FspBI CTAG 1 cut(s) 356
GlaI GCGC 1 cut(s) 354
GluI GCNGC 3 cut(s) 204, 207, 342
GsaI CCCAGC 1 cut(s) 99
HaeIII GGCC 2 cut(s) 245, 315
HhaI GCGC 1 cut(s) 355
Hin1II CATG 1 cut(s) 283
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HinfI GANTC 1 cut(s) 88
Hpy188I TCNGA 2 cut(s) 141, 367
Hpy188III TCNNGA 2 cut(s) 65, 271
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 2 cut(s) 73, 210
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4V TGCA 2 cut(s) 203, 326
HpyF10VI GCNNNNNNNGC 3 cut(s) 153, 300, 350
HpyF3I CTNAG 1 cut(s) 138
Hsp92II CATG 1 cut(s) 283
HspAI GCGC 1 cut(s) 353
Kzo9I GATC 1 cut(s) 10
LguI GCTCTTC 1 cut(s) 146
LpnPI CCDG 8 cut(s) 50, 81, 175, 195, 215, 227, 302, 329
Lsp1109I GCAGC 3 cut(s) 215, 218, 328
MaeI CTAG 1 cut(s) 356
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 2 cut(s) 163, 225
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 3 cut(s) 71, 185, 360
MnlI CCTC 3 cut(s) 147, 283, 305
MseI TTAA 1 cut(s) 261
MslI CAYNNNNRTG 1 cut(s) 374
MspR9I CCNGG 1 cut(s) 317
Mva1269I GAATGC 1 cut(s) 205
MvaI CCWGG 1 cut(s) 317
MwoI GCNNNNNNNGC 3 cut(s) 153, 300, 350
NdeII GATC 1 cut(s) 10
NheI GCTAGC 1 cut(s) 355
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 1 cut(s) 135
NmeAIII GCCGAG 1 cut(s) 271
PciSI GCTCTTC 1 cut(s) 146
PctI GAATGC 1 cut(s) 205
PfeI GAWTC 1 cut(s) 88
PkrI GCNGC 3 cut(s) 205, 208, 343
PpuMI RGGWCCY 1 cut(s) 134
Psp5II RGGWCCY 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 315
PspFI CCCAGC 1 cut(s) 95
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 1 cut(s) 134
PspPPI RGGWCCY 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 374
SapI GCTCTTC 1 cut(s) 146
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 3 cut(s) 204, 207, 342
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 317
SduI GDGCHC 1 cut(s) 158
SetI ASST 2 cut(s) 139, 343
SinI GGWCC 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 374
Sse9I AATT 3 cut(s) 71, 185, 360
SsiI CCGC 2 cut(s) 102, 147
SspMI CTAG 1 cut(s) 356
StyD4I CCNGG 1 cut(s) 315
TaaI ACNGT 1 cut(s) 17
TaqI TCGA 1 cut(s) 33
TasI AATT 3 cut(s) 71, 185, 360
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 1 cut(s) 22
TseI GCWGC 3 cut(s) 203, 206, 341
TspDTI ATGAA 1 cut(s) 212
TspRI CASTG 1 cut(s) 22
VpaK11BI GGWCC 1 cut(s) 134
XapI RAATTY 2 cut(s) 71, 185
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.