Rorug05G0050600

Protein ROOT HAIR DEFECTIVE 3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000525
Physical Location & Seq
Forward (+)
4421345 .. 4421668
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0050600.1

Sequence Viewer

Length: 324 bp
ATGGTTATGGAAACTGGTACAGTTTTGGAGAAAGCACCAATCAGTGAGGGTAGGGTTTTTGTTACTGAGTTCAAGTTGATAAAGAGTGGTCATAAGGAAAACAAGTTTGAAACACATAAGGTTAGCAGGGAGCTGTATGGCAACACACATATGATTGGATATGAAGAGAGTCTACTTTGGCTTGGAGACCGGCCATGTGGAACTAGCCAAGAAGGTAAGAATGCTTCAGAAGCTGGGGGCAGAATAATGGAGAACGTACAAGGAAAAATGAATGTCACTGTGGATAACCAAGGCCCAAATCATGTCAATGTGTGTGTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RHD3

Protein Analysis

107

Amino Acids

11.86

Weight (kDa)

6.07

Isoelectric Point (pI)

25.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45160
fragaria_vesca FvH4_3g11890
malus_domestica MD00G1023300.v1.1 MD00G1023500.v1.1 MD00G1046300.v1.1 MD00G1046400.v1.1 MD00G1047200.v1.1 MD05G1180600.v1.1 MD05G1256900.v1.1 MD05G1257200.v1.1 MD05G1257300.v1.1 MD05G1257400.v1.1 MD05G1257900.v1.1 MD05G1258000.v1.1 MD10G1213100.v1.1 MD10G1237400.v1.1
prunus_persica Prupe.4G106400_v2.0.a1 Prupe.4G106400_v2.0.a1 Prupe.4G106900_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.I001700_v2.0.a1
pyrus_communis pycom05g23620 pycom05g23630 pycom05g23880 pycom05g24090 pycom05g24270 pycom10g19870
rosa_chinensis RchiOBHm_Chr5g0019311 RchiOBHm_Chr5g0019391 RchiOBHm_Chr5g0019401 RchiOBHm_Chr7g0226131 RchiOBHm_Chr7g0226141 RchiOBHm_Chr7g0226161
rosa_laevigata RLG00000001766 RLG00000001767 RLG00000032437 RLG00000032441 RLG00000032445
rosa_multiflora Rmu_sc0001350.1_g000022 Rmu_sc0001350.1_g000031 Rmu_sc0002141.1_g000028 Rmu_sc0002759.1_g000037 Rmu_sc0002759.1_g000039 Rmu_sc0005292.1_g000004 Rmu_sc0005292.1_g000050
rosa_roxburghii Rroxscaffold_1G00058650 Rroxscaffold_1G00058670 Rroxscaffold_1G00074270 Rroxscaffold_2G00108890 Rroxscaffold_2G00125570
rosa_rugosa Rorug05G0050100 Rorug05G0050200 Rorug05G0050300 Rorug05G0050500 Rorug05G0050600 Rorug05G0050700
rosa_samantha Rh5AG140700 Rh5AG141000 Rh5AG141300 Rh5AG390000 Rh5BG139700 Rh5BG139800 Rh5BG139900 Rh5BG140000 Rh5CG151000 Rh5CG151500 Rh5CG151600 Rh5DG140200 Rh5DG140400 Rh5DG140600 Rh7AG368100 Rh7AG381400 Rh7AG381700 Rh7CG386400 Rh7CG400900 Rh7CG401200 Rh7DG380400 Rh7DG380500
rosa_wichuraiana Rw5G012510 Rw5G012530 Rw5G012540 Rw7G031980 Rw7G031990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 172
AcoI YGGCCR 1 cut(s) 191
AcuI CTGAAG 1 cut(s) 210
AfaI GTAC 2 cut(s) 19, 258
AgsI TTSAA 2 cut(s) 73, 110
AluBI AGCT 2 cut(s) 133, 233
AluI AGCT 2 cut(s) 133, 233
Alw26I GTCTC 1 cut(s) 180
AlwNI CAGNNNCTG 1 cut(s) 233
AoxI GGCC 2 cut(s) 191, 292
AspS9I GGNCC 1 cut(s) 293
BarI GAAGNNNNNNTAC 4 cut(s) 156, 188, 208, 240
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 293
BsaI GGTCTC 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 289
Bse118I RCCGGY 1 cut(s) 189
Bse1I ACTGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 289
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 19
BseYI CCCAGC 1 cut(s) 233
BshFI GGCC 2 cut(s) 193, 294
BsiSI CCGG 1 cut(s) 190
BsmAI GTCTC 1 cut(s) 180
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 2 cut(s) 193, 294
Bso31I GGTCTC 1 cut(s) 180
BspANI GGCC 2 cut(s) 193, 294
BspCNI CTCAG 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 189
BsrI ACTGG 1 cut(s) 19
BssAI RCCGGY 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 289
BssT1I CCWWGG 1 cut(s) 289
Bst4CI ACNGT 2 cut(s) 22, 280
Bst6I CTCTTC 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 66
BstMAI GTCTC 1 cut(s) 180
BstMWI GCNNNNNNNGC 1 cut(s) 230
BsuRI GGCC 2 cut(s) 193, 294
BtsIMutI CAGTG 2 cut(s) 49, 276
CaiI CAGNNNCTG 1 cut(s) 233
Cfr10I RCCGGY 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 293
Csp6I GTAC 2 cut(s) 18, 257
CviAII CATG 2 cut(s) 195, 302
CviJI RGCY 6 cut(s) 133, 181, 193, 207, 233, 294
CviKI_1 RGCY 6 cut(s) 133, 181, 193, 207, 233, 294
CviQI GTAC 2 cut(s) 18, 257
DdeI CTNAG 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 191
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 289
Eco31I GGTCTC 1 cut(s) 180
Eco57I CTGAAG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 2 cut(s) 198, 305
FaiI YATR 9 cut(s) 8, 93, 117, 138, 150, 152, 162, 196, 303
FatI CATG 2 cut(s) 194, 301
FauNDI CATATG 1 cut(s) 150
FblI GTMKAC 1 cut(s) 172
FspBI CTAG 1 cut(s) 204
GsaI CCCAGC 1 cut(s) 237
HaeIII GGCC 2 cut(s) 193, 294
HapII CCGG 1 cut(s) 190
Hin1II CATG 2 cut(s) 198, 305
HinfI GANTC 1 cut(s) 169
HpaII CCGG 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 229
Hpy8I GTNNAC 1 cut(s) 173
HpyAV CCTTC 1 cut(s) 206
HpyCH4III ACNGT 2 cut(s) 22, 280
HpyCH4IV ACGT 1 cut(s) 255
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 1 cut(s) 66
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 2 cut(s) 198, 305
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 3 cut(s) 112, 203, 219
MaeI CTAG 1 cut(s) 204
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 2 cut(s) 61, 274
MboII GAAGA 1 cut(s) 176
MlyI GAGTC 1 cut(s) 178
MnlI CCTC 1 cut(s) 40
MseI TTAA 1 cut(s) 322
MslI CAYNNNNRTG 2 cut(s) 149, 306
MspI CCGG 1 cut(s) 190
Mva1269I GAATGC 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 230
NdeI CATATG 1 cut(s) 150
NlaIII CATG 2 cut(s) 198, 305
NmuCI GTSAC 1 cut(s) 274
PctI GAATGC 1 cut(s) 226
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
PspFI CCCAGC 1 cut(s) 233
PspPI GGNCC 1 cut(s) 293
PstNI CAGNNNCTG 1 cut(s) 233
RsaI GTAC 2 cut(s) 19, 258
RsaNI GTAC 2 cut(s) 18, 257
RseI CAYNNNNRTG 2 cut(s) 149, 306
SaqAI TTAA 1 cut(s) 322
Sau96I GGNCC 1 cut(s) 293
SchI GAGTC 1 cut(s) 178
SetI ASST 5 cut(s) 123, 135, 217, 235, 258
SmiMI CAYNNNNRTG 2 cut(s) 149, 306
SspMI CTAG 1 cut(s) 204
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 2 cut(s) 22, 280
TaiI ACGT 1 cut(s) 258
Tru1I TTAA 1 cut(s) 322
Tru9I TTAA 1 cut(s) 322
TscAI CASTG 2 cut(s) 49, 283
TseFI GTSAC 1 cut(s) 274
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 2 cut(s) 177, 284
TspRI CASTG 2 cut(s) 49, 283
XmiI GTMKAC 1 cut(s) 172
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.