pycom05g23880

GTP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000525
Physical Location & Seq
Forward (+)
25573139 .. 25573621
483 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g23880.1

Sequence Viewer

Length: 483 bp
ATGTCATCTCACCGAATTTCACATGGCTCAGCCGCCCTTCCCCTAATTTCAAACCCCAGACACACATATACACTACCGTCCATCTGTGTTGTTCGATTTTGTCGATGGGGATCCAGGTCGAAGATCCGAGAGCAAAATTTTTGGTGCTCGTTTTCGCTGGAAACCATGGCTCATCTGGCAAGCCATATCCAAAACTACGAGGTCCGATTCCTCCCCGGGTTCTTTGACTCTCGCTCAAATTGGACGGATTTTCGAGTGGAACTGTTCGCCATGGCCTGCAGCAACGCCGCGGCCGAGTTGCTTCGGGAGACTGAGATGGACGCATCACAAAAGAGAAAGAAAGAGAGATGGCTTTCTCCAGGAGGGCTTGCTGGCGATAGAAGGGGTGTTGTCCCTGCGTCAGGATTTTCCCTTAGTGCACAACAGATTTGGAAAGTAATCAAAGAGAACAAGGACTTGGATCTTCCCGCTCACACCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RHD3

Protein Analysis

161

Amino Acids

18.22

Weight (kDa)

9.46

Isoelectric Point (pI)

55.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RHD3_GTPase PF05879 84 - 156 7e-13 Root hair defective 3 GTP-binding protein (RHD3) GTPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45160
fragaria_vesca FvH4_3g11890
malus_domestica MD00G1023300.v1.1 MD00G1023500.v1.1 MD00G1046300.v1.1 MD00G1046400.v1.1 MD00G1047200.v1.1 MD05G1180600.v1.1 MD05G1256900.v1.1 MD05G1257200.v1.1 MD05G1257300.v1.1 MD05G1257400.v1.1 MD05G1257900.v1.1 MD05G1258000.v1.1 MD10G1213100.v1.1 MD10G1237400.v1.1
prunus_persica Prupe.4G106400_v2.0.a1 Prupe.4G106400_v2.0.a1 Prupe.4G106900_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.I001700_v2.0.a1
pyrus_communis pycom05g23620 pycom05g23630 pycom05g23880 pycom05g24090 pycom05g24270 pycom10g19870
rosa_chinensis RchiOBHm_Chr5g0019311 RchiOBHm_Chr5g0019391 RchiOBHm_Chr5g0019401 RchiOBHm_Chr7g0226131 RchiOBHm_Chr7g0226141 RchiOBHm_Chr7g0226161
rosa_laevigata RLG00000001766 RLG00000001767 RLG00000032437 RLG00000032441 RLG00000032445
rosa_multiflora Rmu_sc0001350.1_g000022 Rmu_sc0001350.1_g000031 Rmu_sc0002141.1_g000028 Rmu_sc0002759.1_g000037 Rmu_sc0002759.1_g000039 Rmu_sc0005292.1_g000004 Rmu_sc0005292.1_g000050
rosa_roxburghii Rroxscaffold_1G00058650 Rroxscaffold_1G00058670 Rroxscaffold_1G00074270 Rroxscaffold_2G00108890 Rroxscaffold_2G00125570
rosa_rugosa Rorug05G0050100 Rorug05G0050200 Rorug05G0050300 Rorug05G0050500 Rorug05G0050600 Rorug05G0050700
rosa_samantha Rh5AG140700 Rh5AG141000 Rh5AG141300 Rh5AG390000 Rh5BG139700 Rh5BG139800 Rh5BG139900 Rh5BG140000 Rh5CG151000 Rh5CG151500 Rh5CG151600 Rh5DG140200 Rh5DG140400 Rh5DG140600 Rh7AG368100 Rh7AG381400 Rh7AG381700 Rh7CG386400 Rh7CG400900 Rh7CG401200 Rh7DG380400 Rh7DG380500
rosa_wichuraiana Rw5G012510 Rw5G012530 Rw5G012540 Rw7G031980 Rw7G031990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 470
AccII CGCG 1 cut(s) 290
AciI CCGC 4 cut(s) 33, 288, 290, 468
AclWI GGATC 4 cut(s) 105, 118, 118, 468
AcoI YGGCCR 1 cut(s) 291
AcsI RAATTY 2 cut(s) 15, 136
AfiI CCNNNNNNNGG 1 cut(s) 401
AgsI TTSAA 1 cut(s) 51
AjnI CCWGG 2 cut(s) 113, 358
AjuI GAANNNNNNNTTGG 2 cut(s) 440, 472
Alw21I GWGCWC 2 cut(s) 149, 421
Alw26I GTCTC 1 cut(s) 302
Alw44I GTGCAC 1 cut(s) 417
AlwI GGATC 4 cut(s) 105, 118, 118, 468
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 2 cut(s) 273, 291
ApaLI GTGCAC 1 cut(s) 417
ApeKI GCWGC 1 cut(s) 279
ApoI RAATTY 2 cut(s) 15, 136
AspS9I GGNCC 1 cut(s) 202
AsuC2I CCSGG 2 cut(s) 216, 217
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 1 cut(s) 202
BaeGI GKGCMC 1 cut(s) 421
BamHI GGATCC 1 cut(s) 110
Bbv12I GWGCWC 2 cut(s) 149, 421
BbvI GCAGC 1 cut(s) 291
BccI CCATC 4 cut(s) 89, 99, 310, 342
BciT130I CCWGG 2 cut(s) 115, 360
BcnI CCSGG 2 cut(s) 216, 217
BcoDI GTCTC 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 277
BisI GCNGC 4 cut(s) 33, 280, 288, 291
BlpI GCTNAGC 1 cut(s) 28
BlsI GCNGC 4 cut(s) 34, 281, 289, 292
Bme1390I CCNGG 4 cut(s) 115, 216, 217, 360
Bme18I GGWCC 1 cut(s) 202
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 112
BmrFI CCNGG 4 cut(s) 115, 216, 217, 360
BmsI GCATC 1 cut(s) 332
BpmI CTGGAG 1 cut(s) 342
Bpu1102I GCTNAGC 1 cut(s) 28
BpuMI CCSGG 2 cut(s) 216, 217
BsaBI GATNNNNATC 1 cut(s) 109
BsaJI CCNNGG 5 cut(s) 165, 214, 215, 270, 288
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse8I GATNNNNATC 1 cut(s) 109
BseBI CCWGG 2 cut(s) 115, 360
BseDI CCNNGG 5 cut(s) 165, 214, 215, 270, 288
BseJI GATNNNNATC 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 401
BseMII CTCAG 2 cut(s) 42, 303
BseSI GKGCMC 1 cut(s) 421
BseX3I CGGCCG 1 cut(s) 291
BseXI GCAGC 1 cut(s) 291
Bsh1236I CGCG 1 cut(s) 290
Bsh1285I CGRYCG 1 cut(s) 294
BshFI GGCC 2 cut(s) 275, 293
BsiEI CGRYCG 1 cut(s) 294
BsiHKAI GWGCWC 2 cut(s) 149, 421
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 1 cut(s) 216
BslFI GGGAC 1 cut(s) 377
BslI CCNNNNNNNGG 1 cut(s) 401
BsmAI GTCTC 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 377
BsnI GGCC 2 cut(s) 275, 293
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 2 cut(s) 149, 421
Bsp143I GATC 3 cut(s) 110, 123, 460
Bsp1720I GCTNAGC 1 cut(s) 28
Bsp19I CCATGG 2 cut(s) 165, 270
BspACI CCGC 4 cut(s) 33, 288, 290, 468
BspANI GGCC 2 cut(s) 275, 293
BspCNI CTCAG 2 cut(s) 41, 304
BspFNI CGCG 1 cut(s) 290
BspLI GGNNCC 1 cut(s) 112
BspMAI CTGCAG 1 cut(s) 281
BspPI GGATC 4 cut(s) 105, 118, 118, 468
BsrBI CCGCTC 1 cut(s) 470
BssECI CCNNGG 5 cut(s) 165, 214, 215, 270, 288
BssMI GATC 3 cut(s) 110, 123, 460
BssT1I CCWWGG 2 cut(s) 165, 270
Bst2UI CCWGG 2 cut(s) 115, 360
Bst4CI ACNGT 2 cut(s) 78, 264
BstC8I GCNNGC 4 cut(s) 181, 277, 369, 373
BstDEI CTNAG 3 cut(s) 28, 312, 413
BstDSI CCRYGG 3 cut(s) 165, 270, 288
BstENI CCTNNNNNAGG 1 cut(s) 399
BstFNI CGCG 1 cut(s) 290
BstKTI GATC 3 cut(s) 113, 126, 463
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 3 cut(s) 110, 123, 460
BstMCI CGRYCG 1 cut(s) 294
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNI CCWGG 2 cut(s) 115, 360
BstSCI CCNGG 4 cut(s) 113, 214, 215, 358
BstSFI CTRYAG 1 cut(s) 277
BstSLI GKGCMC 1 cut(s) 421
BstUI CGCG 1 cut(s) 290
BstV1I GCAGC 1 cut(s) 291
BstX2I RGATCY 3 cut(s) 110, 123, 460
BstYI RGATCY 3 cut(s) 110, 123, 460
BstZI CGGCCG 1 cut(s) 291
BsuRI GGCC 2 cut(s) 275, 293
BtgI CCRYGG 3 cut(s) 165, 270, 288
Cac8I GCNNGC 4 cut(s) 181, 277, 369, 373
Cfr13I GGNCC 1 cut(s) 202
Cfr42I CCGCGG 1 cut(s) 291
Cfr9I CCCGGG 1 cut(s) 215
CseI GACGC 2 cut(s) 329, 387
CviAII CATG 3 cut(s) 23, 166, 271
CviJI RGCY 8 cut(s) 27, 32, 170, 183, 275, 293, 352, 367
CviKI_1 RGCY 8 cut(s) 27, 32, 170, 183, 275, 293, 352, 367
DdeI CTNAG 3 cut(s) 28, 312, 413
DpnI GATC 3 cut(s) 112, 125, 462
DpnII GATC 3 cut(s) 110, 123, 460
EaeI YGGCCR 1 cut(s) 291
EagI CGGCCG 1 cut(s) 291
EclXI CGGCCG 1 cut(s) 291
Eco130I CCWWGG 2 cut(s) 165, 270
Eco47I GGWCC 1 cut(s) 202
Eco52I CGGCCG 1 cut(s) 291
Eco88I CYCGRG 1 cut(s) 215
EcoNI CCTNNNNNAGG 1 cut(s) 399
EcoRII CCWGG 2 cut(s) 113, 358
EcoT14I CCWWGG 2 cut(s) 165, 270
ErhI CCWWGG 2 cut(s) 165, 270
FaeI CATG 3 cut(s) 26, 169, 274
FaiI YATR 6 cut(s) 24, 67, 69, 167, 186, 272
FaqI GGGAC 1 cut(s) 377
FatI CATG 3 cut(s) 22, 165, 270
FauI CCCGC 1 cut(s) 475
Fnu4HI GCNGC 4 cut(s) 33, 280, 288, 291
Fsp4HI GCNGC 4 cut(s) 33, 280, 288, 291
GluI GCNGC 4 cut(s) 33, 280, 288, 291
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 2 cut(s) 275, 293
HapII CCGG 1 cut(s) 216
HgaI GACGC 2 cut(s) 329, 387
Hin1II CATG 3 cut(s) 26, 169, 274
HinfI GANTC 2 cut(s) 207, 227
HpaII CCGG 1 cut(s) 216
Hpy166II GTNNAC 1 cut(s) 419
Hpy188I TCNGA 2 cut(s) 128, 206
Hpy188III TCNNGA 2 cut(s) 305, 402
Hpy8I GTNNAC 1 cut(s) 419
HpyAV CCTTC 2 cut(s) 47, 375
HpyCH4III ACNGT 2 cut(s) 78, 264
HpyCH4V TGCA 2 cut(s) 279, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 3 cut(s) 28, 312, 413
Hsp92II CATG 3 cut(s) 26, 169, 274
KspI CCGCGG 1 cut(s) 291
Kzo9I GATC 3 cut(s) 110, 123, 460
Lsp1109I GCAGC 1 cut(s) 291
LweI GCATC 1 cut(s) 332
MalI GATC 3 cut(s) 112, 125, 462
MbiI CCGCTC 1 cut(s) 470
MboI GATC 3 cut(s) 110, 123, 460
MboII GAAGA 2 cut(s) 133, 455
MflI RGATCY 3 cut(s) 110, 123, 460
MhlI GDGCHC 2 cut(s) 149, 421
MluCI AATT 4 cut(s) 15, 45, 136, 238
MlyI GAGTC 1 cut(s) 221
MnlI CCTC 3 cut(s) 193, 221, 356
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 4 cut(s) 115, 216, 217, 360
MvaI CCWGG 2 cut(s) 115, 360
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 176
NciI CCSGG 2 cut(s) 216, 217
NcoI CCATGG 2 cut(s) 165, 270
NdeII GATC 3 cut(s) 110, 123, 460
NlaIII CATG 3 cut(s) 26, 169, 274
NlaIV GGNNCC 1 cut(s) 112
NmeAIII GCCGAG 1 cut(s) 319
PcsI WCGNNNNNNNCGW 2 cut(s) 100, 291
PfeI GAWTC 1 cut(s) 207
PfoI TCCNGGA 1 cut(s) 358
PkrI GCNGC 4 cut(s) 34, 281, 289, 292
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
Psp6I CCWGG 2 cut(s) 113, 358
PspGI CCWGG 2 cut(s) 113, 358
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 1 cut(s) 202
PstI CTGCAG 1 cut(s) 281
PsuI RGATCY 3 cut(s) 110, 123, 460
SacII CCGCGG 1 cut(s) 291
SatI GCNGC 4 cut(s) 33, 280, 288, 291
Sau3AI GATC 3 cut(s) 110, 123, 460
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 4 cut(s) 115, 216, 217, 360
SduI GDGCHC 2 cut(s) 149, 421
SetI ASST 2 cut(s) 119, 204
SfaNI GCATC 1 cut(s) 332
SfcI CTRYAG 1 cut(s) 277
Sfr303I CCGCGG 1 cut(s) 291
SgrBI CCGCGG 1 cut(s) 291
SinI GGWCC 1 cut(s) 202
SmaI CCCGGG 1 cut(s) 217
Sse9I AATT 4 cut(s) 15, 45, 136, 238
SsiI CCGC 4 cut(s) 33, 288, 290, 468
StyD4I CCNGG 4 cut(s) 113, 214, 215, 358
StyI CCWWGG 2 cut(s) 165, 270
TaaI ACNGT 2 cut(s) 78, 264
TaqI TCGA 4 cut(s) 94, 103, 119, 253
TasI AATT 4 cut(s) 15, 45, 136, 238
TauI GCSGC 3 cut(s) 35, 290, 293
TfiI GAWTC 1 cut(s) 207
TseI GCWGC 1 cut(s) 279
TspGWI ACGGA 1 cut(s) 260
TspMI CCCGGG 1 cut(s) 215
VneI GTGCAC 1 cut(s) 417
VpaK11BI GGWCC 1 cut(s) 202
XagI CCTNNNNNAGG 1 cut(s) 399
XapI RAATTY 2 cut(s) 15, 136
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XmaI CCCGGG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.