Rh5AG141300

Protein ROOT HAIR DEFECTIVE 3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000525
Physical Location & Seq
Forward (+)
14665739 .. 14672574
6836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG141300.1

Sequence Viewer

Length: 303 bp
ATGGCTGCCGTCTGCTTGGATAAGAAGCCAAATAATATAAAGAAAGTTCTCTTCTCTTCTCTAATGTCATTGGATGGAACTGGAGCACCTCTTGCTTCAACCACTTGGGATGAGGGGCGGACCGAAATCAACTCGACGATTAATGAGACCAGAGTCAGGGAACCGACCCTGATGACGACTTGTGCGCAAAAAAGAAAGCGAGAGCACCTTTCTAAACTTGCAAGCGTACTCCCCAAGAAAGGAGACGATCTGCAGGGTGCAAAAATTGAAACAGACCAAGATACAATGCGAAGGAAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RHD3

Protein Analysis

100

Amino Acids

11.1

Weight (kDa)

9.47

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45160
fragaria_vesca FvH4_3g11890
malus_domestica MD00G1023300.v1.1 MD00G1023500.v1.1 MD00G1046300.v1.1 MD00G1046400.v1.1 MD00G1047200.v1.1 MD05G1180600.v1.1 MD05G1256900.v1.1 MD05G1257200.v1.1 MD05G1257300.v1.1 MD05G1257400.v1.1 MD05G1257900.v1.1 MD05G1258000.v1.1 MD10G1213100.v1.1 MD10G1237400.v1.1
prunus_persica Prupe.4G106400_v2.0.a1 Prupe.4G106400_v2.0.a1 Prupe.4G106900_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.4G113800_v2.0.a1 Prupe.I001700_v2.0.a1
pyrus_communis pycom05g23620 pycom05g23630 pycom05g23880 pycom05g24090 pycom05g24270 pycom10g19870
rosa_chinensis RchiOBHm_Chr5g0019311 RchiOBHm_Chr5g0019391 RchiOBHm_Chr5g0019401 RchiOBHm_Chr7g0226131 RchiOBHm_Chr7g0226141 RchiOBHm_Chr7g0226161
rosa_laevigata RLG00000001766 RLG00000001767 RLG00000032437 RLG00000032441 RLG00000032445
rosa_multiflora Rmu_sc0001350.1_g000022 Rmu_sc0001350.1_g000031 Rmu_sc0002141.1_g000028 Rmu_sc0002759.1_g000037 Rmu_sc0002759.1_g000039 Rmu_sc0005292.1_g000004 Rmu_sc0005292.1_g000050
rosa_roxburghii Rroxscaffold_1G00058650 Rroxscaffold_1G00058670 Rroxscaffold_1G00074270 Rroxscaffold_2G00108890 Rroxscaffold_2G00125570
rosa_rugosa Rorug05G0050100 Rorug05G0050200 Rorug05G0050300 Rorug05G0050500 Rorug05G0050600 Rorug05G0050700
rosa_samantha Rh5AG140700 Rh5AG141000 Rh5AG141300 Rh5AG390000 Rh5BG139700 Rh5BG139800 Rh5BG139900 Rh5BG140000 Rh5CG151000 Rh5CG151500 Rh5CG151600 Rh5DG140200 Rh5DG140400 Rh5DG140600 Rh7AG368100 Rh7AG381400 Rh7AG381700 Rh7CG386400 Rh7CG400900 Rh7CG401200 Rh7DG380400 Rh7DG380500
rosa_wichuraiana Rw5G012510 Rw5G012530 Rw5G012540 Rw7G031980 Rw7G031990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 186
AciI CCGC 1 cut(s) 118
AfaI GTAC 1 cut(s) 228
AfiI CCNNNNNNNGG 2 cut(s) 156, 239
AgsI TTSAA 2 cut(s) 99, 269
Alw21I GWGCWC 2 cut(s) 88, 207
Alw26I GTCTC 2 cut(s) 140, 237
ApeKI GCWGC 1 cut(s) 5
AseI ATTAAT 1 cut(s) 141
AspLEI GCGC 1 cut(s) 187
AspS9I GGNCC 1 cut(s) 120
AvaII GGWCC 1 cut(s) 120
Bbv12I GWGCWC 2 cut(s) 88, 207
BccI CCATC 1 cut(s) 68
BcoDI GTCTC 2 cut(s) 140, 237
BfmI CTRYAG 1 cut(s) 251
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 120
BmiI GGNNCC 1 cut(s) 162
BoxI GACNNNNGTC 1 cut(s) 152
BpmI CTGGAG 1 cut(s) 102
BsaI GGTCTC 1 cut(s) 140
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 239
Bse1I ACTGG 1 cut(s) 85
BseGI GGATG 2 cut(s) 79, 115
BseLI CCNNNNNNNGG 2 cut(s) 156, 239
BseNI ACTGG 1 cut(s) 85
BsiHKAI GWGCWC 2 cut(s) 88, 207
BslI CCNNNNNNNGG 2 cut(s) 156, 239
BsmAI GTCTC 2 cut(s) 140, 237
BsmBI CGTCTC 1 cut(s) 237
Bso31I GGTCTC 1 cut(s) 140
Bsp1286I GDGCHC 2 cut(s) 88, 207
Bsp143I GATC 1 cut(s) 247
BspACI CCGC 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 162
BspMAI CTGCAG 1 cut(s) 255
BspTNI GGTCTC 1 cut(s) 140
BsrI ACTGG 1 cut(s) 85
BssMI GATC 1 cut(s) 247
Bst6I CTCTTC 2 cut(s) 56, 61
BstAPI GCANNNNNTGC 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 223
BstF5I GGATG 2 cut(s) 79, 115
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 1 cut(s) 250
BstMAI GTCTC 2 cut(s) 140, 237
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstPAI GACNNNNGTC 1 cut(s) 152
BstSFI CTRYAG 1 cut(s) 251
BtsCI GGATG 2 cut(s) 79, 115
Cac8I GCNNGC 1 cut(s) 223
CfoI GCGC 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 120
CpoI CGGWCCG 1 cut(s) 120
Csp6I GTAC 1 cut(s) 227
CspI CGGWCCG 1 cut(s) 120
CviJI RGCY 2 cut(s) 5, 28
CviKI_1 RGCY 2 cut(s) 5, 28
CviQI GTAC 1 cut(s) 227
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
Eam1104I CTCTTC 2 cut(s) 56, 61
EarI CTCTTC 2 cut(s) 56, 61
EciI GGCGGA 1 cut(s) 133
Eco31I GGTCTC 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 120
Esp3I CGTCTC 1 cut(s) 237
FaiI YATR 1 cut(s) 38
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 2 cut(s) 86, 122
Fsp4HI GCNGC 1 cut(s) 6
FspI TGCGCA 1 cut(s) 186
GlaI GCGC 1 cut(s) 186
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 102
HhaI GCGC 1 cut(s) 187
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HinfI GANTC 1 cut(s) 153
Hpy99I CGWCG 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 285
HpyCH4V TGCA 3 cut(s) 221, 253, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HspAI GCGC 1 cut(s) 185
Kzo9I GATC 1 cut(s) 247
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 5 cut(s) 66, 142, 163, 182, 239
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 2 cut(s) 43, 48
MhlI GDGCHC 2 cut(s) 88, 207
MluCI AATT 1 cut(s) 264
MlyI GAGTC 1 cut(s) 162
MnlI CCTC 2 cut(s) 99, 106
MseI TTAA 2 cut(s) 141, 301
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 1 cut(s) 247
NlaIV GGNNCC 1 cut(s) 162
NsbI TGCGCA 1 cut(s) 186
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
PshAI GACNNNNGTC 1 cut(s) 152
PshBI ATTAAT 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 1 cut(s) 120
PstI CTGCAG 1 cut(s) 255
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
Rsr2I CGGWCCG 1 cut(s) 120
RsrII CGGWCCG 1 cut(s) 120
SaqAI TTAA 2 cut(s) 141, 301
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 247
Sau96I GGNCC 1 cut(s) 120
SchI GAGTC 1 cut(s) 162
SduI GDGCHC 2 cut(s) 88, 207
SetI ASST 2 cut(s) 91, 210
SfcI CTRYAG 1 cut(s) 251
SinI GGWCC 1 cut(s) 120
Sse9I AATT 1 cut(s) 264
SsiI CCGC 1 cut(s) 118
TaqI TCGA 1 cut(s) 134
TaqII GACCGA 1 cut(s) 137
TasI AATT 1 cut(s) 264
Tru1I TTAA 2 cut(s) 141, 301
Tru9I TTAA 2 cut(s) 141, 301
TseI GCWGC 1 cut(s) 5
VpaK11BI GGWCC 1 cut(s) 120
VspI ATTAAT 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.